Wall clock time and date at job start Tue Mar 31 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00540 * 2 1 4 4 H 1.48501 * 109.47124 * 265.16247 * 3 2 1 5 5 H 1.48504 * 109.46636 * 25.16145 * 3 2 1 6 6 H 1.48499 * 109.47289 * 145.16153 * 3 2 1 7 7 C 1.37886 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99446 * 354.06001 * 7 2 1 9 9 C 1.50699 * 120.00127 * 174.06875 * 7 2 1 10 10 H 1.09000 * 109.47274 * 56.78968 * 9 7 2 11 11 N 1.46505 * 109.46553 * 296.79517 * 9 7 2 12 12 C 1.34776 * 119.99798 * 155.00256 * 11 9 7 13 13 O 1.21288 * 119.99847 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00293 * 179.97438 * 12 11 9 15 15 H 1.09003 * 110.43260 * 59.29881 * 14 12 11 16 16 C 1.54619 * 110.48807 * 181.84025 * 14 12 11 17 17 C 1.54478 * 101.76776 * 93.88057 * 16 14 12 18 18 N 1.46768 * 105.47234 * 25.41476 * 17 16 14 19 19 C 1.34741 * 111.34906 * 343.02298 * 18 17 16 20 20 O 1.21282 * 125.12088 * 180.39205 * 19 18 17 21 21 C 1.52994 * 109.47113 * 176.79776 * 9 7 2 22 22 F 1.39903 * 109.47205 * 185.24715 * 21 9 7 23 23 F 1.39899 * 109.47493 * 65.24630 * 21 9 7 24 24 F 1.39907 * 109.46965 * 305.24685 * 21 9 7 25 25 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96992 * 120.00041 * 334.99731 * 11 9 7 27 27 H 1.08999 * 110.97411 * 212.00218 * 16 14 12 28 28 H 1.08999 * 110.97151 * 335.76498 * 16 14 12 29 29 H 1.09000 * 110.24745 * 144.40942 * 17 16 14 30 30 H 1.08997 * 110.25012 * 266.42063 * 17 16 14 31 31 H 0.96995 * 124.35174 * 162.98264 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5991 1.9873 -1.3951 5 1 1.3993 2.6800 0.5953 6 1 3.4919 1.4717 0.7998 7 6 2.0045 -1.1942 -0.0005 8 1 1.4687 -2.1269 0.0958 9 6 3.5054 -1.1977 -0.1354 10 1 3.9430 -0.5924 0.6585 11 7 3.8799 -0.6401 -1.4374 12 6 5.0930 -0.0775 -1.6058 13 8 5.8748 -0.0333 -0.6795 14 6 5.4786 0.4955 -2.9452 15 1 4.7829 1.2823 -3.2370 16 6 6.9252 1.0400 -2.9047 17 6 7.7323 -0.1711 -3.4225 18 7 6.7945 -0.9434 -4.2460 19 6 5.5179 -0.5928 -3.9952 20 8 4.5433 -1.0773 -4.5303 21 6 4.0238 -2.6331 -0.0271 22 9 5.4228 -2.6253 -0.0322 23 9 3.5577 -3.3805 -1.1140 24 9 3.5650 -3.2060 1.1639 25 1 -0.4850 0.8401 0.0004 26 1 3.2549 -0.6759 -2.1782 27 1 7.0383 1.8969 -3.5688 28 1 7.2171 1.2966 -1.8863 29 1 8.5743 0.1671 -4.0264 30 1 8.0851 -0.7747 -2.5863 31 1 7.0594 -1.6194 -4.8892 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:36 Heat of formation + Delta-G solvation = -253.038048 kcal Electronic energy + Delta-G solvation = -23550.251180 eV Core-core repulsion = 19415.399966 eV Total energy + Delta-G solvation = -4134.851214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.96177 -48.46684 -48.44738 -41.99406 -40.00398 -37.56245 -36.61361 -34.47129 -32.75023 -30.99060 -28.64510 -27.00271 -24.16937 -22.79071 -22.45828 -21.10295 -20.08026 -19.44340 -18.85883 -18.60952 -18.45000 -18.36362 -17.03719 -16.62669 -16.41240 -15.55285 -15.44514 -15.33960 -15.25592 -14.91303 -14.81150 -14.73428 -14.64355 -14.59673 -14.56344 -14.32443 -13.81300 -13.55740 -13.01026 -12.60348 -12.43750 -12.29683 -12.07929 -11.91042 -11.31839 -11.06378 -10.91248 -10.26587 -10.12797 -8.54431 -6.73362 1.07409 1.25902 1.32646 1.40228 1.51652 1.90774 2.10460 2.18333 2.37340 2.91687 3.08464 3.25689 3.29176 3.38049 3.42197 3.74002 4.02543 4.21638 4.48385 4.49793 4.75782 4.89682 5.01190 5.12996 5.28032 5.71578 5.84491 5.90229 6.38353 6.48738 6.96532 7.02215 7.11695 8.58398 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.008941 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.064229 B = 3131.018756 C = 3831.039088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.056 3.944 3 Si 0.930 3.070 4 H -0.246 1.246 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.211 3.789 10 H 0.088 0.912 11 N -0.714 5.714 12 C 0.513 3.487 13 O -0.547 6.547 14 C -0.158 4.158 15 H 0.145 0.855 16 C -0.112 4.112 17 C 0.099 3.901 18 N -0.715 5.715 19 C 0.524 3.476 20 O -0.560 6.560 21 C 0.444 3.556 22 F -0.188 7.188 23 F -0.189 7.189 24 F -0.185 7.185 25 H 0.280 0.720 26 H 0.409 0.591 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.890 4.235 -7.449 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.149 4.149 3 Si 0.753 3.247 4 H -0.170 1.170 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.106 3.894 10 H 0.105 0.895 11 N -0.366 5.366 12 C 0.299 3.701 13 O -0.425 6.425 14 C -0.183 4.183 15 H 0.162 0.838 16 C -0.150 4.150 17 C -0.024 4.024 18 N -0.371 5.371 19 C 0.308 3.692 20 O -0.438 6.438 21 C 0.388 3.612 22 F -0.170 7.170 23 F -0.171 7.171 24 F -0.166 7.166 25 H 0.090 0.910 26 H 0.247 0.753 27 H 0.143 0.857 28 H 0.121 0.879 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 15.759 4.154 -6.980 17.730 hybrid contribution -0.464 -0.277 -0.317 0.626 sum 15.295 3.878 -7.298 17.385 Atomic orbital electron populations 1.69961 1.07930 1.29475 1.46415 1.25589 0.95345 1.02300 0.91700 0.85967 0.79168 0.78844 0.80728 1.17015 1.20497 1.18431 1.20742 0.87876 0.95530 1.54386 0.92243 1.19949 0.97070 0.85749 0.86595 0.89455 1.47305 1.16686 1.58144 1.14491 1.20635 0.81535 0.77777 0.90161 1.90658 1.50649 1.58105 1.43072 1.22337 1.04515 0.99644 0.91776 0.83777 1.22715 0.88035 0.98712 1.05515 1.22353 0.92778 0.92049 0.95200 1.46219 1.06312 1.41770 1.42762 1.20567 0.83801 0.82816 0.81984 1.90783 1.38857 1.58903 1.55286 1.21352 0.74728 0.91967 0.73105 1.93141 1.30469 1.97121 1.96221 1.93101 1.88641 1.79578 1.55775 1.93106 1.88897 1.86800 1.47809 0.91018 0.75349 0.85711 0.87864 0.85544 0.91286 0.73770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.23 13.96 21.45 0.30 -50.93 16 2 C 0.06 3.00 5.46 84.66 0.46 3.46 16 3 Si 0.93 40.66 26.13 68.60 1.79 42.45 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.26 -11.41 6.55 99.48 0.65 -10.76 16 7 C -0.55 -29.37 8.64 25.60 0.22 -29.15 16 8 H 0.06 3.56 7.91 -2.91 -0.02 3.53 16 9 C 0.21 9.89 1.41 44.24 0.06 9.95 16 10 H 0.09 4.20 6.29 -2.39 -0.02 4.19 16 11 N -0.71 -29.96 3.15 -446.09 -1.40 -31.36 16 12 C 0.51 18.85 6.57 87.66 0.58 19.42 16 13 O -0.55 -21.74 14.03 -3.05 -0.04 -21.79 16 14 C -0.16 -4.29 3.32 -11.55 -0.04 -4.33 16 15 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 16 C -0.11 -1.97 6.51 31.65 0.21 -1.76 16 17 C 0.10 1.50 7.78 86.83 0.68 2.18 16 18 N -0.72 -14.60 6.25 -459.37 -2.87 -17.47 16 19 C 0.52 15.32 7.73 87.85 0.68 16.00 16 20 O -0.56 -21.11 17.99 -3.04 -0.05 -21.17 16 21 C 0.44 20.17 2.79 71.98 0.20 20.37 16 22 F -0.19 -8.10 15.84 44.97 0.71 -7.39 16 23 F -0.19 -8.75 16.97 44.97 0.76 -7.98 16 24 F -0.18 -8.44 16.83 44.97 0.76 -7.68 16 25 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.41 17.38 8.56 -92.71 -0.79 16.59 16 27 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 2.05 6.94 -2.39 -0.02 2.04 16 29 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.42 6.95 8.96 -92.71 -0.83 6.12 16 Total: -1.00 -67.60 281.67 2.53 -65.06 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.46 Total: 22.11 kcal Atomic # 6 Polarization: 33.11 SS G_CDS: 3.04 Total: 36.15 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.98 Total: -99.76 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.10 Total: -42.95 kcal Atomic # 9 Polarization: -25.29 SS G_CDS: 2.23 Total: -23.05 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.79 Total: 42.45 kcal Total: -67.60 2.53 -65.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.975 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds