Wall clock time and date at job start Tue Mar 31 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99936 * 2 1 4 4 H 1.48498 * 109.47156 * 270.00467 * 3 2 1 5 5 H 1.48502 * 109.46637 * 30.00498 * 3 2 1 6 6 H 1.48501 * 109.46922 * 149.99845 * 3 2 1 7 7 C 1.37878 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00077 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47229 * 59.99911 * 9 7 2 11 11 N 1.46500 * 109.47318 * 179.97438 * 9 7 2 12 12 C 1.34772 * 119.99876 * 204.99862 * 11 9 7 13 13 O 1.21279 * 120.00178 * 4.92360 * 12 11 9 14 14 C 1.50701 * 119.99704 * 185.19825 * 12 11 9 15 15 C 1.50699 * 115.55285 * 29.23336 * 14 12 11 16 16 N 1.34769 * 120.00032 * 65.13181 * 15 14 12 17 17 O 1.21283 * 119.99954 * 245.13803 * 15 14 12 18 18 C 1.53007 * 117.49814 * 243.51973 * 14 12 11 19 19 C 1.52993 * 60.00118 * 252.50960 * 18 14 12 20 20 C 1.53000 * 109.46951 * 300.00176 * 9 7 2 21 21 F 1.39902 * 109.47094 * 299.99739 * 20 9 7 22 22 F 1.39895 * 109.47249 * 59.99718 * 20 9 7 23 23 F 1.39905 * 109.46995 * 179.97438 * 20 9 7 24 24 H 0.96995 * 120.00408 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99737 * 24.99579 * 11 9 7 26 26 H 0.97001 * 120.00173 * 355.00297 * 16 15 14 27 27 H 0.97005 * 119.99945 * 175.00281 * 16 15 14 28 28 H 1.08995 * 117.49818 * 0.02562 * 18 14 12 29 29 H 1.09004 * 117.49153 * 145.02300 * 18 14 12 30 30 H 1.09003 * 117.50728 * 252.50897 * 19 18 14 31 31 H 1.09003 * 117.49789 * 107.48620 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6248 -2.5564 -0.8920 11 7 2.2032 -3.6127 -0.0027 12 6 1.8370 -4.8118 -0.4970 13 8 0.7519 -4.9457 -1.0219 14 6 2.7735 -5.9878 -0.3920 15 6 3.7083 -5.9709 0.7899 16 7 3.2145 -6.0574 2.0409 17 8 4.9050 -5.8792 0.6153 18 6 3.2941 -6.5950 -1.6964 19 6 2.2551 -7.3481 -0.8632 20 6 0.3710 -2.5810 1.2471 21 9 1.1749 -2.5077 2.3898 22 9 -0.5381 -1.5177 1.2475 23 9 -0.3289 -3.7924 1.2458 24 1 -0.4850 0.8400 0.0004 25 1 3.0970 -3.4868 0.3524 26 1 2.2552 -6.0576 2.1847 27 1 3.8184 -6.1196 2.7975 28 1 2.9595 -6.1437 -2.6304 29 1 4.3130 -6.9822 -1.6997 30 1 2.5904 -8.2307 -0.3184 31 1 1.2366 -7.3923 -1.2490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928810086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:00 Heat of formation + Delta-G solvation = -212.095035 kcal Electronic energy + Delta-G solvation = -23396.566403 eV Core-core repulsion = 19263.490612 eV Total energy + Delta-G solvation = -4133.075791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.45011 -48.07979 -47.75507 -41.72703 -39.94464 -37.28738 -36.30453 -34.71704 -34.45379 -30.62462 -26.79917 -26.36027 -23.90331 -23.45349 -22.56458 -20.90883 -19.66216 -18.90898 -18.85046 -18.61982 -18.16752 -17.80872 -16.93924 -16.80801 -16.40460 -15.79649 -15.54914 -15.17413 -15.03887 -14.96002 -14.59414 -14.49259 -14.33297 -14.11897 -14.03912 -13.88391 -13.13515 -12.82772 -12.66924 -12.61200 -12.27007 -12.19989 -11.67633 -11.64356 -11.26603 -10.85889 -10.74761 -10.72247 -10.17493 -8.25720 -6.56434 1.30886 1.31801 1.44161 1.45261 1.56136 2.00481 2.31130 2.34692 2.45362 2.79192 2.90420 3.51875 3.62166 3.73164 3.77060 3.82421 3.87293 4.16206 4.57571 4.66165 4.84839 4.87928 5.14134 5.27197 5.46673 5.60164 5.78462 6.22468 6.46267 6.53215 7.05360 7.15222 7.20230 8.66669 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.006710 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.457116 B = 4171.753160 C = 4467.981886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.019 3.981 3 Si 0.979 3.021 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.250 3.750 10 H 0.053 0.947 11 N -0.701 5.701 12 C 0.549 3.451 13 O -0.559 6.559 14 C -0.221 4.221 15 C 0.563 3.437 16 N -0.827 5.827 17 O -0.564 6.564 18 C -0.112 4.112 19 C -0.104 4.104 20 C 0.418 3.582 21 F -0.201 7.201 22 F -0.149 7.149 23 F -0.215 7.215 24 H 0.270 0.730 25 H 0.406 0.594 26 H 0.411 0.589 27 H 0.415 0.585 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -10.995 2.289 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.602 4.602 8 H 0.102 0.898 9 C 0.143 3.857 10 H 0.071 0.929 11 N -0.351 5.351 12 C 0.336 3.664 13 O -0.438 6.438 14 C -0.228 4.228 15 C 0.346 3.654 16 N -0.390 5.390 17 O -0.443 6.443 18 C -0.150 4.150 19 C -0.141 4.141 20 C 0.362 3.638 21 F -0.182 7.182 22 F -0.131 7.131 23 F -0.197 7.197 24 H 0.080 0.920 25 H 0.242 0.758 26 H 0.241 0.759 27 H 0.249 0.751 28 H 0.126 0.874 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.541 -10.896 1.685 11.924 hybrid contribution -0.036 1.148 0.910 1.465 sum 4.505 -9.748 2.595 11.048 Atomic orbital electron populations 1.70498 1.07246 1.28278 1.44361 1.25922 0.95919 1.03443 0.93371 0.85214 0.78496 0.77353 0.78647 1.19500 1.20584 1.18707 1.21162 0.94261 0.88613 1.56159 0.89783 1.19382 0.88876 0.87090 0.90369 0.92892 1.45924 1.16813 1.10098 1.62234 1.19599 0.86236 0.83243 0.77370 1.90691 1.23773 1.84439 1.44851 1.21497 1.03755 0.97471 1.00045 1.19125 0.87158 0.74826 0.84243 1.43641 1.12886 1.75179 1.07300 1.90738 1.16652 1.50729 1.86185 1.23148 1.01100 0.99560 0.91170 1.23243 1.00825 0.89893 1.00138 1.23100 0.80719 0.72555 0.87457 1.92998 1.74124 1.96151 1.54973 1.93383 1.68854 1.54529 1.96290 1.93057 1.81490 1.48159 1.97002 0.91987 0.75848 0.75928 0.75147 0.87353 0.85544 0.84647 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.42 9.50 21.45 0.20 -47.22 16 2 C 0.02 0.99 5.20 84.66 0.44 1.43 16 3 Si 0.98 40.69 29.54 68.60 2.03 42.72 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.57 -28.76 8.46 25.60 0.22 -28.54 16 8 H 0.08 4.08 7.74 -2.91 -0.02 4.05 16 9 C 0.25 12.31 2.22 44.24 0.10 12.41 16 10 H 0.05 2.99 7.51 -2.39 -0.02 2.97 16 11 N -0.70 -28.60 4.85 -446.10 -2.16 -30.76 16 12 C 0.55 20.74 6.87 87.66 0.60 21.34 16 13 O -0.56 -24.69 15.08 -3.03 -0.05 -24.74 16 14 C -0.22 -6.24 2.42 -53.67 -0.13 -6.37 16 15 C 0.56 15.46 6.42 87.66 0.56 16.02 16 16 N -0.83 -17.45 8.87 -173.54 -1.54 -18.99 16 17 O -0.56 -18.63 17.53 -3.04 -0.05 -18.69 16 18 C -0.11 -2.60 9.76 30.59 0.30 -2.30 16 19 C -0.10 -2.18 9.75 30.59 0.30 -1.89 16 20 C 0.42 20.67 2.81 71.98 0.20 20.87 16 21 F -0.20 -9.32 16.94 44.97 0.76 -8.56 16 22 F -0.15 -8.15 12.91 44.97 0.58 -7.57 16 23 F -0.22 -10.18 15.88 44.97 0.71 -9.47 16 24 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 25 H 0.41 15.48 7.76 -92.71 -0.72 14.76 16 26 H 0.41 8.20 8.83 -92.71 -0.82 7.38 16 27 H 0.42 7.04 8.93 -92.70 -0.83 6.22 16 28 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.13 2.59 7.99 -2.39 -0.02 2.58 16 30 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.11 2.59 7.68 -2.39 -0.02 2.57 16 Total: -1.00 -64.81 287.36 1.94 -62.87 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -1.13 Total: 27.41 kcal Atomic # 6 Polarization: 30.40 SS G_CDS: 2.59 Total: 32.99 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -3.50 Total: -96.97 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.10 Total: -43.43 kcal Atomic # 9 Polarization: -27.65 SS G_CDS: 2.06 Total: -25.60 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -64.81 1.94 -62.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.227 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds