Wall clock time and date at job start Tue Mar 31 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48506 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47252 * 300.00504 * 3 2 1 6 6 H 1.48495 * 109.46799 * 60.00403 * 3 2 1 7 7 C 1.37880 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00018 * 359.72095 * 7 2 1 10 10 H 1.09003 * 109.47039 * 300.27422 * 9 7 2 11 11 N 1.46504 * 109.46801 * 180.27745 * 9 7 2 12 12 C 1.34786 * 119.99817 * 154.99843 * 11 9 7 13 13 O 1.21280 * 119.99963 * 355.12815 * 12 11 9 14 14 C 1.50696 * 119.99847 * 175.12691 * 12 11 9 15 15 C 1.50697 * 115.55421 * 279.05178 * 14 12 11 16 16 N 1.34785 * 119.99666 * 302.03122 * 15 14 12 17 17 O 1.21276 * 120.00624 * 122.02378 * 15 14 12 18 18 C 1.52999 * 117.49715 * 133.34309 * 14 12 11 19 19 C 1.53001 * 60.00109 * 252.51049 * 18 14 12 20 20 C 1.52995 * 109.47474 * 60.27636 * 9 7 2 21 21 F 1.39902 * 109.46857 * 59.99771 * 20 9 7 22 22 F 1.39895 * 109.47387 * 180.02562 * 20 9 7 23 23 F 1.39905 * 109.47050 * 299.99979 * 20 9 7 24 24 H 0.96997 * 119.99949 * 359.97438 * 1 2 3 25 25 H 0.96993 * 120.00248 * 334.99510 * 11 9 7 26 26 H 0.96996 * 120.00009 * 355.01542 * 16 15 14 27 27 H 0.97000 * 119.99551 * 175.01645 * 16 15 14 28 28 H 1.09000 * 117.49817 * 359.97438 * 18 14 12 29 29 H 1.09001 * 117.50374 * 145.02180 * 18 14 12 30 30 H 1.09002 * 117.50171 * 252.51283 * 19 18 14 31 31 H 1.09002 * 117.49850 * 107.48549 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6244 -2.5530 0.8955 11 7 2.2031 -3.6126 0.0101 12 6 1.8370 -4.8101 0.5088 13 8 0.7515 -4.9424 1.0333 14 6 2.7764 -5.9847 0.4144 15 6 2.7925 -6.6993 -0.9122 16 7 1.6550 -7.2256 -1.4079 17 8 3.8288 -6.8008 -1.5339 18 6 2.9814 -6.8283 1.6743 19 6 4.0946 -5.8988 1.1866 20 6 0.3714 -2.5858 -1.2435 21 9 1.1756 -2.5167 -2.3862 22 9 -0.3286 -3.7970 -1.2379 23 9 -0.5378 -1.5224 -1.2482 24 1 -0.4850 0.8400 0.0004 25 1 3.0969 -3.4881 -0.3455 26 1 0.8420 -7.2084 -0.8792 27 1 1.6495 -7.6217 -2.2933 28 1 2.4371 -6.5334 2.5714 29 1 3.1277 -7.9005 1.5438 30 1 4.9732 -6.3595 0.7351 31 1 4.2822 -4.9927 1.7627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928810087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:03 Heat of formation + Delta-G solvation = -189.160609 kcal Electronic energy + Delta-G solvation = -23327.202862 eV Core-core repulsion = 19195.121582 eV Total energy + Delta-G solvation = -4132.081280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.44154 -46.10217 -45.69485 -40.38534 -38.53580 -35.93420 -34.74838 -33.54858 -32.61547 -28.69386 -25.35605 -24.62266 -22.57951 -22.29251 -20.80283 -19.47080 -18.22523 -17.14394 -16.92691 -16.89625 -16.67559 -16.13968 -15.55184 -15.16423 -14.80017 -14.76085 -14.01925 -13.70404 -13.30883 -13.02214 -12.96249 -12.57324 -12.48449 -12.35029 -12.05787 -11.89715 -11.66596 -11.28599 -11.11338 -10.94981 -10.87846 -10.64671 -10.40623 -10.05055 -9.71747 -9.66970 -9.33267 -8.79822 -8.39331 -6.30057 -4.53964 2.42593 2.91198 3.15034 3.22314 3.25535 3.33718 3.49708 3.88292 4.16356 4.46248 4.71419 4.77076 4.86861 4.89434 5.04624 5.51751 5.63106 5.75768 5.78341 5.80210 6.04055 6.12263 6.75351 6.82036 7.02147 7.31207 7.38727 7.56840 8.15727 8.24107 8.42686 8.68711 9.14222 10.61940 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.006596 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.886558 B = 4244.042540 C = 4679.643252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.243 3.757 10 H 0.088 0.912 11 N -0.700 5.700 12 C 0.548 3.452 13 O -0.526 6.526 14 C -0.199 4.199 15 C 0.569 3.431 16 N -0.843 5.843 17 O -0.538 6.538 18 C -0.128 4.128 19 C -0.133 4.133 20 C 0.417 3.583 21 F -0.207 7.207 22 F -0.220 7.220 23 F -0.135 7.135 24 H 0.268 0.732 25 H 0.403 0.597 26 H 0.408 0.592 27 H 0.403 0.597 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -9.820 1.094 10.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.137 3.863 10 H 0.106 0.894 11 N -0.349 5.349 12 C 0.332 3.668 13 O -0.403 6.403 14 C -0.205 4.205 15 C 0.352 3.648 16 N -0.406 5.406 17 O -0.414 6.414 18 C -0.166 4.166 19 C -0.171 4.171 20 C 0.361 3.639 21 F -0.189 7.189 22 F -0.202 7.202 23 F -0.116 7.116 24 H 0.079 0.921 25 H 0.237 0.763 26 H 0.238 0.762 27 H 0.234 0.766 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.491 -9.730 1.170 10.403 hybrid contribution 0.071 0.781 -0.745 1.082 sum 3.562 -8.949 0.425 9.641 Atomic orbital electron populations 1.70393 1.05879 1.27394 1.43631 1.25090 0.95178 1.00203 0.93922 0.86138 0.79870 0.81811 0.77930 1.19313 1.20516 1.20501 1.20917 0.93907 0.87952 1.56104 0.90252 1.19815 0.88750 0.85821 0.91872 0.89420 1.46063 1.17448 1.10328 1.61033 1.19018 0.86227 0.82851 0.78748 1.90709 1.22263 1.83880 1.43409 1.21515 1.03873 1.01034 0.94094 1.18984 0.83528 0.77273 0.85027 1.43730 1.12722 1.62378 1.21788 1.90732 1.31454 1.59057 1.60161 1.23023 1.01139 0.97624 0.94793 1.23115 0.91317 1.02527 1.00117 1.23144 0.80836 0.72755 0.87191 1.93005 1.74349 1.96180 1.55397 1.93045 1.81542 1.48670 1.96984 1.93412 1.68303 1.53702 1.96215 0.92091 0.76292 0.76226 0.76585 0.86929 0.87684 0.86868 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.61 9.51 55.43 0.53 -22.09 16 2 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.88 29.54 -169.99 -5.02 14.86 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.55 -13.87 8.46 -34.44 -0.29 -14.16 16 8 H 0.08 1.90 7.74 -52.48 -0.41 1.49 16 9 C 0.24 5.89 2.22 -69.08 -0.15 5.74 16 10 H 0.09 2.35 7.51 -51.93 -0.39 1.96 16 11 N -0.70 -14.18 4.98 -54.93 -0.27 -14.46 16 12 C 0.55 10.34 6.41 -10.98 -0.07 10.27 16 13 O -0.53 -11.37 15.82 5.56 0.09 -11.28 16 14 C -0.20 -2.96 2.26 -156.81 -0.35 -3.31 16 15 C 0.57 8.74 7.40 -10.98 -0.08 8.66 16 16 N -0.84 -10.55 8.86 31.22 0.28 -10.27 16 17 O -0.54 -9.60 17.36 5.56 0.10 -9.50 16 18 C -0.13 -1.49 9.87 -26.73 -0.26 -1.75 16 19 C -0.13 -1.62 9.75 -26.73 -0.26 -1.88 16 20 C 0.42 10.48 2.81 37.15 0.10 10.58 16 21 F -0.21 -5.12 16.94 2.25 0.04 -5.09 16 22 F -0.22 -5.34 15.88 2.25 0.04 -5.30 16 23 F -0.14 -3.68 12.93 2.25 0.03 -3.65 16 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.40 7.48 8.54 -40.82 -0.35 7.14 16 26 H 0.41 4.81 8.83 -40.82 -0.36 4.45 16 27 H 0.40 4.24 8.93 -40.82 -0.36 3.87 16 28 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.31 7.87 -51.93 -0.41 0.90 16 31 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -30.65 289.67 -3.98 -34.64 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -2.68 Total: 12.05 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: -1.46 Total: 15.72 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.53 Total: -46.82 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 9 Polarization: -14.14 SS G_CDS: 0.10 Total: -14.03 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.65 -3.98 -34.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.524 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds