Wall clock time and date at job start Tue Mar 31 2020 01:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48506 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47252 * 300.00504 * 3 2 1 6 6 H 1.48495 * 109.46799 * 60.00403 * 3 2 1 7 7 C 1.37880 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00018 * 359.72095 * 7 2 1 10 10 H 1.09003 * 109.47039 * 300.27422 * 9 7 2 11 11 N 1.46504 * 109.46801 * 180.27745 * 9 7 2 12 12 C 1.34786 * 119.99817 * 154.99843 * 11 9 7 13 13 O 1.21280 * 119.99963 * 355.12815 * 12 11 9 14 14 C 1.50696 * 119.99847 * 175.12691 * 12 11 9 15 15 C 1.50697 * 115.55421 * 279.05178 * 14 12 11 16 16 N 1.34785 * 119.99666 * 302.03122 * 15 14 12 17 17 O 1.21276 * 120.00624 * 122.02378 * 15 14 12 18 18 C 1.52999 * 117.49715 * 133.34309 * 14 12 11 19 19 C 1.53001 * 60.00109 * 252.51049 * 18 14 12 20 20 C 1.52995 * 109.47474 * 60.27636 * 9 7 2 21 21 F 1.39902 * 109.46857 * 59.99771 * 20 9 7 22 22 F 1.39895 * 109.47387 * 180.02562 * 20 9 7 23 23 F 1.39905 * 109.47050 * 299.99979 * 20 9 7 24 24 H 0.96997 * 119.99949 * 359.97438 * 1 2 3 25 25 H 0.96993 * 120.00248 * 334.99510 * 11 9 7 26 26 H 0.96996 * 120.00009 * 355.01542 * 16 15 14 27 27 H 0.97000 * 119.99551 * 175.01645 * 16 15 14 28 28 H 1.09000 * 117.49817 * 359.97438 * 18 14 12 29 29 H 1.09001 * 117.50374 * 145.02180 * 18 14 12 30 30 H 1.09002 * 117.50171 * 252.51283 * 19 18 14 31 31 H 1.09002 * 117.49850 * 107.48549 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6244 -2.5530 0.8955 11 7 2.2031 -3.6126 0.0101 12 6 1.8370 -4.8101 0.5088 13 8 0.7515 -4.9424 1.0333 14 6 2.7764 -5.9847 0.4144 15 6 2.7925 -6.6993 -0.9122 16 7 1.6550 -7.2256 -1.4079 17 8 3.8288 -6.8008 -1.5339 18 6 2.9814 -6.8283 1.6743 19 6 4.0946 -5.8988 1.1866 20 6 0.3714 -2.5858 -1.2435 21 9 1.1756 -2.5167 -2.3862 22 9 -0.3286 -3.7970 -1.2379 23 9 -0.5378 -1.5224 -1.2482 24 1 -0.4850 0.8400 0.0004 25 1 3.0969 -3.4881 -0.3455 26 1 0.8420 -7.2084 -0.8792 27 1 1.6495 -7.6217 -2.2933 28 1 2.4371 -6.5334 2.5714 29 1 3.1277 -7.9005 1.5438 30 1 4.9732 -6.3595 0.7351 31 1 4.2822 -4.9927 1.7627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928810087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:02 Heat of formation + Delta-G solvation = -212.804530 kcal Electronic energy + Delta-G solvation = -23328.228139 eV Core-core repulsion = 19195.121582 eV Total energy + Delta-G solvation = -4133.106557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.46635 -48.10620 -47.76829 -41.67293 -39.96296 -37.14184 -36.47966 -34.67961 -34.47157 -30.51830 -26.77627 -26.44653 -24.01866 -23.40305 -22.46837 -20.92857 -19.63952 -18.93129 -18.82844 -18.60595 -18.16946 -17.78798 -17.03899 -16.81152 -16.38673 -16.00447 -15.48154 -15.11303 -15.00590 -14.88970 -14.57165 -14.51220 -14.34414 -14.16342 -14.05684 -13.88375 -13.12540 -12.80300 -12.69246 -12.56833 -12.27866 -12.19916 -11.70454 -11.56974 -11.25838 -10.81310 -10.78064 -10.72523 -10.15264 -8.24584 -6.54885 1.15811 1.44492 1.46360 1.52475 1.59127 1.99508 2.34107 2.37423 2.46060 2.73678 2.91269 3.51157 3.67761 3.71591 3.76340 3.85226 3.88455 4.16071 4.58678 4.67005 4.85863 4.89598 5.13543 5.30087 5.48694 5.61885 5.74674 6.22044 6.49189 6.57287 7.08392 7.14128 7.21299 8.68467 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.006596 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.886558 B = 4244.042540 C = 4679.643252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.017 3.983 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.090 0.910 9 C 0.250 3.750 10 H 0.056 0.944 11 N -0.699 5.699 12 C 0.551 3.449 13 O -0.557 6.557 14 C -0.219 4.219 15 C 0.568 3.432 16 N -0.831 5.831 17 O -0.565 6.565 18 C -0.107 4.107 19 C -0.121 4.121 20 C 0.414 3.586 21 F -0.205 7.205 22 F -0.217 7.217 23 F -0.149 7.149 24 H 0.269 0.731 25 H 0.411 0.589 26 H 0.413 0.587 27 H 0.413 0.587 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 -10.311 1.380 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.599 4.599 8 H 0.108 0.892 9 C 0.143 3.857 10 H 0.074 0.926 11 N -0.348 5.348 12 C 0.336 3.664 13 O -0.435 6.435 14 C -0.225 4.225 15 C 0.351 3.649 16 N -0.394 5.394 17 O -0.444 6.444 18 C -0.144 4.144 19 C -0.159 4.159 20 C 0.358 3.642 21 F -0.187 7.187 22 F -0.199 7.199 23 F -0.130 7.130 24 H 0.079 0.921 25 H 0.247 0.753 26 H 0.243 0.757 27 H 0.246 0.754 28 H 0.132 0.868 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.926 -10.259 1.451 11.472 hybrid contribution -0.430 0.868 -0.830 1.276 sum 4.496 -9.390 0.621 10.430 Atomic orbital electron populations 1.70508 1.07363 1.28188 1.44586 1.25960 0.95913 1.03576 0.93406 0.85140 0.79126 0.77557 0.77710 1.18060 1.20762 1.20058 1.21239 0.94506 0.88362 1.55768 0.89179 1.19417 0.88913 0.87263 0.90092 0.92583 1.45966 1.17184 1.10111 1.61579 1.19592 0.86344 0.83153 0.77306 1.90689 1.23887 1.84403 1.44488 1.21374 1.05141 1.00471 0.95538 1.19047 0.83655 0.77265 0.84939 1.43673 1.12187 1.61313 1.22222 1.90719 1.32475 1.60490 1.60759 1.23208 0.99682 0.98764 0.92742 1.23251 0.90720 1.03032 0.98866 1.23288 0.80801 0.72502 0.87650 1.92999 1.74218 1.96176 1.55296 1.93042 1.81526 1.48326 1.96997 1.93383 1.68853 1.54491 1.96315 0.92068 0.75274 0.75669 0.75420 0.86793 0.85147 0.85829 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.43 9.51 21.45 0.20 -47.22 16 2 C 0.02 0.87 5.20 84.66 0.44 1.31 16 3 Si 0.98 40.14 29.54 68.60 2.03 42.17 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.56 -28.04 8.46 25.60 0.22 -27.82 16 8 H 0.09 4.20 7.74 -2.91 -0.02 4.17 16 9 C 0.25 12.23 2.22 44.24 0.10 12.33 16 10 H 0.06 3.11 7.51 -2.39 -0.02 3.09 16 11 N -0.70 -28.02 4.98 -446.09 -2.22 -30.24 16 12 C 0.55 20.38 6.41 87.65 0.56 20.94 16 13 O -0.56 -23.99 15.82 -3.03 -0.05 -24.04 16 14 C -0.22 -6.13 2.26 -53.68 -0.12 -6.25 16 15 C 0.57 16.50 7.40 87.65 0.65 17.15 16 16 N -0.83 -19.54 8.86 -173.53 -1.54 -21.08 16 17 O -0.57 -19.31 17.36 -3.02 -0.05 -19.36 16 18 C -0.11 -2.18 9.87 30.59 0.30 -1.88 16 19 C -0.12 -2.65 9.75 30.60 0.30 -2.35 16 20 C 0.41 20.95 2.81 71.98 0.20 21.15 16 21 F -0.20 -10.07 16.94 44.97 0.76 -9.31 16 22 F -0.22 -10.56 15.88 44.97 0.71 -9.84 16 23 F -0.15 -8.25 12.93 44.97 0.58 -7.66 16 24 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 25 H 0.41 14.93 8.54 -92.71 -0.79 14.13 16 26 H 0.41 9.16 8.83 -92.71 -0.82 8.34 16 27 H 0.41 8.06 8.93 -92.71 -0.83 7.23 16 28 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.12 2.50 7.87 -2.39 -0.02 2.48 16 31 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -64.98 289.67 1.87 -63.12 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -1.21 Total: 28.90 kcal Atomic # 6 Polarization: 31.93 SS G_CDS: 2.65 Total: 34.58 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -3.56 Total: -98.55 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.10 Total: -43.40 kcal Atomic # 9 Polarization: -28.87 SS G_CDS: 2.06 Total: -26.82 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -64.98 1.87 -63.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.689 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds