Wall clock time and date at job start Tue Mar 31 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48503 * 109.47338 * 240.00566 * 3 2 1 5 5 H 1.48496 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00298 * 3 2 1 7 7 C 1.37881 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00021 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46613 * 60.00696 * 9 7 2 11 11 N 1.46496 * 109.47016 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00037 * 205.00057 * 11 9 7 13 13 O 1.21282 * 120.00088 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99882 * 180.02562 * 12 11 9 15 15 H 1.09000 * 110.21584 * 318.06588 * 14 12 11 16 16 C 1.54475 * 110.24426 * 80.00495 * 14 12 11 17 17 C 1.54624 * 101.76934 * 93.58196 * 16 14 12 18 18 C 1.51288 * 104.19426 * 24.79648 * 17 16 14 19 19 O 1.21278 * 124.94257 * 163.78493 * 18 17 16 20 20 N 1.34413 * 110.11268 * 343.74912 * 18 17 16 21 21 C 1.52997 * 109.47466 * 300.00592 * 9 7 2 22 22 F 1.39905 * 109.47157 * 59.99756 * 21 9 7 23 23 F 1.39900 * 109.47010 * 300.00147 * 21 9 7 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 9 7 25 25 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00318 * 25.00910 * 11 9 7 27 27 H 1.09008 * 110.96622 * 211.70088 * 16 14 12 28 28 H 1.08997 * 110.96779 * 335.42210 * 16 14 12 29 29 H 1.08999 * 110.48501 * 143.46996 * 17 16 14 30 30 H 1.08994 * 110.48854 * 265.98355 * 17 16 14 31 31 H 0.97007 * 124.34994 * 179.59933 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 2.2030 -3.6126 -0.0005 12 6 1.8369 -4.8123 -0.4938 13 8 0.7195 -4.9698 -0.9382 14 6 2.8161 -5.9579 -0.4933 15 1 3.8048 -5.6085 -0.7908 16 6 2.8776 -6.6078 0.9067 17 6 1.8451 -7.7507 0.7695 18 6 1.8024 -8.0357 -0.7157 19 8 1.3351 -9.0358 -1.2179 20 7 2.3570 -7.0188 -1.3976 21 6 0.3718 -2.5805 1.2489 22 9 -0.5373 -1.5171 1.2494 23 9 1.1764 -2.5066 2.3910 24 9 -0.3281 -3.7918 1.2486 25 1 -0.4850 0.8401 0.0004 26 1 3.0969 -3.4866 0.3546 27 1 3.8728 -7.0035 1.1097 28 1 2.5765 -5.9000 1.6789 29 1 2.1769 -8.6324 1.3177 30 1 0.8675 -7.4264 1.1261 31 1 2.4428 -6.9897 -2.3634 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928810172.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:39 Heat of formation + Delta-G solvation = -234.185601 kcal Electronic energy + Delta-G solvation = -23194.761335 eV Core-core repulsion = 19060.727625 eV Total energy + Delta-G solvation = -4134.033710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.39805 -48.03078 -47.71146 -41.82695 -39.99745 -37.31468 -36.41761 -34.47672 -32.29798 -30.89188 -28.61610 -26.56704 -24.31343 -23.03367 -21.67727 -21.38250 -19.53850 -18.91451 -18.65232 -18.55210 -18.42425 -17.51354 -16.89613 -16.58615 -16.24408 -15.61215 -15.43181 -14.96087 -14.85592 -14.69029 -14.46472 -14.38368 -14.26734 -14.25802 -14.00742 -13.84978 -13.60825 -13.04932 -12.77242 -12.60531 -12.39876 -12.28397 -12.15126 -11.59559 -11.31822 -11.01404 -10.66391 -10.11712 -10.04794 -8.20016 -6.50981 1.43121 1.49758 1.50331 1.58259 1.59595 2.05832 2.36874 2.50870 2.57137 2.96024 3.32950 3.51114 3.65956 3.82839 3.90567 3.96103 4.23593 4.25775 4.47171 4.78549 4.90989 4.96390 5.06169 5.40693 5.55008 5.66230 5.70465 5.93595 6.54442 6.71235 7.15126 7.19046 7.36133 8.72221 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.030619 B = 0.005560 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.246704 B = 5034.429304 C = 5335.030281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.013 3.987 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.098 0.902 9 C 0.252 3.748 10 H 0.042 0.958 11 N -0.696 5.696 12 C 0.485 3.515 13 O -0.576 6.576 14 C 0.121 3.879 15 H 0.164 0.836 16 C -0.109 4.109 17 C -0.157 4.157 18 C 0.518 3.482 19 O -0.586 6.586 20 N -0.703 5.703 21 C 0.413 3.587 22 F -0.154 7.154 23 F -0.200 7.200 24 F -0.220 7.220 25 H 0.267 0.733 26 H 0.419 0.581 27 H 0.143 0.857 28 H 0.097 0.903 29 H 0.132 0.868 30 H 0.090 0.910 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 -6.921 3.405 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.116 0.884 9 C 0.144 3.856 10 H 0.060 0.940 11 N -0.348 5.348 12 C 0.270 3.730 13 O -0.455 6.455 14 C 0.012 3.988 15 H 0.181 0.819 16 C -0.147 4.147 17 C -0.197 4.197 18 C 0.306 3.694 19 O -0.466 6.466 20 N -0.356 5.356 21 C 0.357 3.643 22 F -0.135 7.135 23 F -0.181 7.181 24 F -0.202 7.202 25 H 0.077 0.923 26 H 0.257 0.743 27 H 0.161 0.839 28 H 0.115 0.885 29 H 0.150 0.850 30 H 0.109 0.891 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.095 -7.437 2.969 12.886 hybrid contribution -0.354 1.121 -0.221 1.196 sum 9.741 -6.317 2.748 11.930 Atomic orbital electron populations 1.70537 1.07621 1.28151 1.44844 1.26015 0.95806 1.03811 0.93551 0.85228 0.77954 0.76802 0.79464 1.18654 1.21564 1.18789 1.21232 0.94739 0.88139 1.55471 0.88365 1.19279 0.89023 0.87742 0.89552 0.93976 1.45870 1.17305 1.09496 1.62143 1.21991 0.89184 0.84770 0.77009 1.90734 1.23715 1.83569 1.47464 1.21850 0.97757 0.85437 0.93751 0.81913 1.22737 1.02402 0.96591 0.92971 1.22408 1.02431 1.02586 0.92249 1.21427 0.74664 0.81579 0.91689 1.90699 1.48199 1.30957 1.76765 1.45963 1.61083 1.18292 1.10226 1.23313 0.80840 0.72284 0.87859 1.93377 1.69106 1.54710 1.96332 1.92993 1.73944 1.96133 1.55067 1.93064 1.81658 1.48455 1.97029 0.92311 0.74286 0.83923 0.88461 0.85017 0.89141 0.74514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.40 9.50 21.45 0.20 -47.20 16 2 C 0.01 0.66 5.20 84.65 0.44 1.10 16 3 Si 0.98 38.57 29.54 68.60 2.03 40.60 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.29 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.56 -26.17 8.46 25.60 0.22 -25.96 16 8 H 0.10 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.25 11.66 2.21 44.24 0.10 11.76 16 10 H 0.04 2.33 7.58 -2.39 -0.02 2.31 16 11 N -0.70 -23.66 4.98 -446.10 -2.22 -25.89 16 12 C 0.48 15.98 6.54 87.66 0.57 16.55 16 13 O -0.58 -25.61 15.13 -3.03 -0.05 -25.66 16 14 C 0.12 2.43 3.93 44.70 0.18 2.60 16 15 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 16 C -0.11 -1.64 6.69 31.65 0.21 -1.43 16 17 C -0.16 -3.29 6.85 30.59 0.21 -3.09 16 18 C 0.52 14.95 8.43 87.90 0.74 15.69 16 19 O -0.59 -21.96 18.03 -3.02 -0.05 -22.02 16 20 N -0.70 -17.07 5.45 -442.97 -2.41 -19.48 16 21 C 0.41 20.15 2.81 71.98 0.20 20.35 16 22 F -0.15 -8.43 12.91 44.97 0.58 -7.85 16 23 F -0.20 -8.95 16.94 44.97 0.76 -8.19 16 24 F -0.22 -10.74 15.68 44.97 0.71 -10.04 16 25 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.42 10.78 8.54 -92.70 -0.79 9.99 16 27 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.10 1.57 7.89 -2.39 -0.02 1.55 16 29 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.42 9.42 8.96 -92.70 -0.83 8.59 16 Total: -1.00 -72.85 282.19 2.00 -70.85 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -0.41 Total: 17.29 kcal Atomic # 6 Polarization: 34.71 SS G_CDS: 2.87 Total: 37.58 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -4.43 Total: -92.57 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.10 Total: -47.67 kcal Atomic # 9 Polarization: -28.13 SS G_CDS: 2.05 Total: -26.08 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -72.85 2.00 -70.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810172.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.336 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds