Wall clock time and date at job start Tue Mar 31 2020 01:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00365 * 2 1 4 4 H 1.48503 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47169 * 299.99904 * 3 2 1 6 6 H 1.48503 * 109.46950 * 60.00049 * 3 2 1 7 7 C 1.37886 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99917 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47334 * 300.00062 * 9 7 2 11 11 N 1.46505 * 109.47179 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99967 * 155.00024 * 11 9 7 13 13 O 1.21272 * 120.00061 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99574 * 179.97438 * 12 11 9 15 15 H 1.09004 * 110.29038 * 318.02550 * 14 12 11 16 16 C 1.54487 * 110.24496 * 80.00401 * 14 12 11 17 17 C 1.54619 * 101.76557 * 93.58162 * 16 14 12 18 18 C 1.51281 * 104.19775 * 24.79876 * 17 16 14 19 19 O 1.21284 * 124.94206 * 163.78189 * 18 17 16 20 20 N 1.34413 * 110.11648 * 343.74848 * 18 17 16 21 21 C 1.53003 * 109.47414 * 59.99878 * 9 7 2 22 22 F 1.39897 * 109.47596 * 179.97438 * 21 9 7 23 23 F 1.39899 * 109.47194 * 300.00086 * 21 9 7 24 24 F 1.39903 * 109.46740 * 59.99884 * 21 9 7 25 25 H 0.96995 * 119.99666 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99401 * 335.00049 * 11 9 7 27 27 H 1.08996 * 110.96729 * 211.70116 * 16 14 12 28 28 H 1.08996 * 110.96659 * 335.42304 * 16 14 12 29 29 H 1.09007 * 110.48907 * 143.47513 * 17 16 14 30 30 H 1.09001 * 110.48711 * 265.98708 * 17 16 14 31 31 H 0.96997 * 124.35521 * 179.59670 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 2.2029 -3.6128 0.0005 12 6 1.8367 -4.8124 0.4938 13 8 0.7190 -4.9701 0.9372 14 6 2.8157 -5.9580 0.4932 15 1 3.3649 -5.9854 -0.4479 16 6 3.7955 -5.8245 1.6802 17 6 3.0983 -6.6810 2.7623 18 6 2.2490 -7.6543 1.9749 19 8 1.7622 -8.6711 2.4222 20 7 2.1118 -7.2279 0.7076 21 6 0.3717 -2.5805 -1.2490 22 9 -0.3274 -3.7922 -1.2494 23 9 -0.5373 -1.5171 -1.2496 24 9 1.1765 -2.5067 -2.3910 25 1 -0.4849 0.8400 0.0004 26 1 3.0968 -3.4867 -0.3545 27 1 4.7729 -6.2353 1.4273 28 1 3.8819 -4.7859 1.9997 29 1 3.8367 -7.2159 3.3598 30 1 2.4735 -6.0556 3.4000 31 1 1.6118 -7.6987 0.0228 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928810173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:42 Heat of formation + Delta-G solvation = -209.022656 kcal Electronic energy + Delta-G solvation = -23070.236496 eV Core-core repulsion = 18937.293933 eV Total energy + Delta-G solvation = -4132.942563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.44448 -46.10163 -45.70281 -40.67387 -38.60649 -36.08069 -34.75392 -32.71452 -31.34522 -29.33364 -27.31276 -24.66356 -23.09095 -21.47624 -20.55039 -19.99107 -18.02050 -17.47761 -16.93911 -16.81469 -16.64327 -15.93122 -15.52207 -14.98058 -14.90624 -14.36259 -13.84371 -13.57485 -13.36757 -13.12742 -13.01663 -12.75397 -12.58763 -12.49622 -12.37416 -12.07997 -11.91099 -11.54912 -11.35434 -11.26625 -10.94889 -10.87844 -10.49218 -9.99982 -9.81700 -9.75127 -8.86103 -8.81937 -8.42080 -6.32539 -4.57385 2.60758 2.90476 3.12145 3.18085 3.21833 3.25227 3.72749 4.12975 4.30067 4.36859 4.48008 4.70823 4.84615 4.96526 5.12727 5.31721 5.56622 5.69941 5.73879 5.77370 5.81598 6.10879 6.69995 6.81898 6.99528 7.02152 7.35351 7.53843 8.12632 8.26871 8.39820 8.69039 9.11112 10.59133 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.005709 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.582492 B = 4903.278296 C = 5472.305876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.085 0.915 11 N -0.707 5.707 12 C 0.489 3.511 13 O -0.522 6.522 14 C 0.112 3.888 15 H 0.112 0.888 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.529 3.471 19 O -0.539 6.539 20 N -0.706 5.706 21 C 0.416 3.584 22 F -0.218 7.218 23 F -0.136 7.136 24 F -0.209 7.209 25 H 0.269 0.731 26 H 0.400 0.600 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 -6.241 -0.125 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.103 0.897 11 N -0.357 5.357 12 C 0.272 3.728 13 O -0.397 6.397 14 C 0.002 3.998 15 H 0.129 0.871 16 C -0.158 4.158 17 C -0.197 4.197 18 C 0.315 3.685 19 O -0.416 6.416 20 N -0.361 5.361 21 C 0.360 3.640 22 F -0.200 7.200 23 F -0.117 7.117 24 F -0.191 7.191 25 H 0.079 0.921 26 H 0.234 0.766 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.910 -6.707 0.513 10.384 hybrid contribution 0.296 0.890 -0.976 1.354 sum 8.206 -5.817 -0.464 10.070 Atomic orbital electron populations 1.70404 1.05921 1.27415 1.43430 1.25102 0.95156 1.00235 0.93964 0.86145 0.79767 0.81889 0.77954 1.19346 1.20544 1.20537 1.20898 0.93813 0.87976 1.56321 0.90267 1.19758 0.88734 0.85831 0.91760 0.89705 1.46073 1.17290 1.10470 1.61883 1.20882 0.88853 0.84188 0.78858 1.90746 1.20940 1.82676 1.45326 1.21615 0.92559 0.83772 1.01864 0.87057 1.22596 0.97668 1.02730 0.92841 1.22349 1.00236 0.98287 0.98820 1.20799 0.79908 0.85315 0.82438 1.90735 1.51404 1.26516 1.72963 1.45859 1.54603 1.22566 1.13054 1.23154 0.80898 0.72817 0.87122 1.93070 1.81549 1.48448 1.96978 1.93410 1.68375 1.53742 1.96190 1.92990 1.74365 1.96189 1.55561 0.92067 0.76597 0.88778 0.88166 0.87803 0.87328 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.25 9.50 55.43 0.53 -21.72 16 2 C 0.06 1.60 5.20 -17.82 -0.09 1.51 16 3 Si 0.92 19.18 29.54 -169.99 -5.02 14.16 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -13.18 8.46 -34.44 -0.29 -13.48 16 8 H 0.08 1.75 7.74 -52.49 -0.41 1.35 16 9 C 0.24 5.66 2.21 -69.08 -0.15 5.51 16 10 H 0.09 2.23 7.58 -51.93 -0.39 1.84 16 11 N -0.71 -12.60 4.98 -54.93 -0.27 -12.87 16 12 C 0.49 8.39 6.54 -10.99 -0.07 8.32 16 13 O -0.52 -11.43 15.13 5.56 0.08 -11.34 16 14 C 0.11 1.31 3.93 -68.16 -0.27 1.04 16 15 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 16 C -0.12 -1.09 6.69 -25.10 -0.17 -1.26 16 17 C -0.16 -1.73 6.85 -26.75 -0.18 -1.91 16 18 C 0.53 7.80 8.43 -10.86 -0.09 7.71 16 19 O -0.54 -9.99 18.03 5.55 0.10 -9.89 16 20 N -0.71 -9.32 5.45 -53.88 -0.29 -9.62 16 21 C 0.42 10.19 2.81 37.16 0.10 10.30 16 22 F -0.22 -5.35 15.67 2.25 0.04 -5.31 16 23 F -0.14 -3.66 12.91 2.25 0.03 -3.63 16 24 F -0.21 -4.88 16.94 2.25 0.04 -4.84 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.40 5.80 8.54 -40.82 -0.35 5.46 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.90 7.89 -51.93 -0.41 0.49 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.41 5.13 8.96 -40.82 -0.37 4.77 16 LS Contribution 282.19 15.07 4.25 4.25 Total: -1.00 -32.23 282.19 -4.49 -36.72 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.75 Total: 6.34 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: -1.22 Total: 17.75 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.04 Total: -44.21 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.18 Total: -21.23 kcal Atomic # 9 Polarization: -13.89 SS G_CDS: 0.10 Total: -13.79 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.23 -4.49 -36.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.307 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds