Wall clock time and date at job start Tue Mar 31 2020 01:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00365 * 2 1 4 4 H 1.48503 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47169 * 299.99904 * 3 2 1 6 6 H 1.48503 * 109.46950 * 60.00049 * 3 2 1 7 7 C 1.37886 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99917 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47334 * 300.00062 * 9 7 2 11 11 N 1.46505 * 109.47179 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99967 * 155.00024 * 11 9 7 13 13 O 1.21272 * 120.00061 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99574 * 179.97438 * 12 11 9 15 15 H 1.09004 * 110.29038 * 318.02550 * 14 12 11 16 16 C 1.54487 * 110.24496 * 80.00401 * 14 12 11 17 17 C 1.54619 * 101.76557 * 93.58162 * 16 14 12 18 18 C 1.51281 * 104.19775 * 24.79876 * 17 16 14 19 19 O 1.21284 * 124.94206 * 163.78189 * 18 17 16 20 20 N 1.34413 * 110.11648 * 343.74848 * 18 17 16 21 21 C 1.53003 * 109.47414 * 59.99878 * 9 7 2 22 22 F 1.39897 * 109.47596 * 179.97438 * 21 9 7 23 23 F 1.39899 * 109.47194 * 300.00086 * 21 9 7 24 24 F 1.39903 * 109.46740 * 59.99884 * 21 9 7 25 25 H 0.96995 * 119.99666 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99401 * 335.00049 * 11 9 7 27 27 H 1.08996 * 110.96729 * 211.70116 * 16 14 12 28 28 H 1.08996 * 110.96659 * 335.42304 * 16 14 12 29 29 H 1.09007 * 110.48907 * 143.47513 * 17 16 14 30 30 H 1.09001 * 110.48711 * 265.98708 * 17 16 14 31 31 H 0.96997 * 124.35521 * 179.59670 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 2.2029 -3.6128 0.0005 12 6 1.8367 -4.8124 0.4938 13 8 0.7190 -4.9701 0.9372 14 6 2.8157 -5.9580 0.4932 15 1 3.3649 -5.9854 -0.4479 16 6 3.7955 -5.8245 1.6802 17 6 3.0983 -6.6810 2.7623 18 6 2.2490 -7.6543 1.9749 19 8 1.7622 -8.6711 2.4222 20 7 2.1118 -7.2279 0.7076 21 6 0.3717 -2.5805 -1.2490 22 9 -0.3274 -3.7922 -1.2494 23 9 -0.5373 -1.5171 -1.2496 24 9 1.1765 -2.5067 -2.3910 25 1 -0.4849 0.8400 0.0004 26 1 3.0968 -3.4867 -0.3545 27 1 4.7729 -6.2353 1.4273 28 1 3.8819 -4.7859 1.9997 29 1 3.8367 -7.2159 3.3598 30 1 2.4735 -6.0556 3.4000 31 1 1.6118 -7.6987 0.0228 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928810173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:42 Heat of formation + Delta-G solvation = -234.480355 kcal Electronic energy + Delta-G solvation = -23071.340425 eV Core-core repulsion = 18937.293933 eV Total energy + Delta-G solvation = -4134.046492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.41659 -48.05256 -47.72861 -41.81926 -39.99164 -37.30500 -36.41514 -34.47224 -32.27932 -30.88685 -28.60647 -26.56906 -24.31850 -23.00615 -21.67055 -21.37477 -19.54930 -18.91278 -18.70596 -18.59935 -18.29124 -17.55948 -16.95316 -16.57064 -16.15264 -15.73941 -15.27055 -14.97536 -14.87384 -14.68286 -14.52368 -14.45137 -14.29431 -14.20705 -14.01935 -13.85922 -13.55618 -13.04556 -12.75109 -12.65001 -12.40781 -12.22796 -12.12545 -11.53450 -11.31200 -11.00335 -10.68676 -10.11147 -10.05041 -8.19967 -6.50436 1.43017 1.48557 1.50446 1.59526 1.62918 2.07690 2.37609 2.47654 2.58421 2.96351 3.34759 3.52712 3.67593 3.81608 3.89990 3.97533 4.21246 4.29501 4.48469 4.81321 4.91667 5.01347 5.09172 5.41207 5.55246 5.67016 5.70673 5.94356 6.55892 6.71624 7.15331 7.19585 7.36479 8.72880 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.005709 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.582492 B = 4903.278296 C = 5472.305876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.012 3.988 3 Si 0.982 3.018 4 H -0.249 1.249 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.555 4.555 8 H 0.100 0.900 9 C 0.252 3.748 10 H 0.045 0.955 11 N -0.696 5.696 12 C 0.485 3.515 13 O -0.576 6.576 14 C 0.119 3.881 15 H 0.158 0.842 16 C -0.107 4.107 17 C -0.155 4.155 18 C 0.516 3.484 19 O -0.587 6.587 20 N -0.705 5.705 21 C 0.411 3.589 22 F -0.222 7.222 23 F -0.153 7.153 24 F -0.201 7.201 25 H 0.267 0.733 26 H 0.419 0.581 27 H 0.140 0.860 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.095 0.905 31 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.401 -6.021 -0.518 13.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.172 1.172 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.592 4.592 8 H 0.118 0.882 9 C 0.144 3.856 10 H 0.062 0.938 11 N -0.348 5.348 12 C 0.271 3.729 13 O -0.455 6.455 14 C 0.010 3.990 15 H 0.175 0.825 16 C -0.144 4.144 17 C -0.195 4.195 18 C 0.305 3.695 19 O -0.468 6.468 20 N -0.358 5.358 21 C 0.355 3.645 22 F -0.204 7.204 23 F -0.135 7.135 24 F -0.183 7.183 25 H 0.076 0.924 26 H 0.257 0.743 27 H 0.158 0.842 28 H 0.124 0.876 29 H 0.150 0.850 30 H 0.114 0.886 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.238 -6.490 0.092 12.978 hybrid contribution -0.777 0.780 -0.879 1.409 sum 10.461 -5.710 -0.787 11.944 Atomic orbital electron populations 1.70548 1.07672 1.28005 1.45040 1.26026 0.95799 1.03857 0.93590 0.85126 0.79483 0.77508 0.77302 1.17211 1.21162 1.20742 1.21299 0.94796 0.87996 1.55109 0.88171 1.19303 0.89025 0.87821 0.89445 0.93768 1.45871 1.17267 1.09605 1.62072 1.21971 0.89098 0.84882 0.76940 1.90732 1.23777 1.83523 1.47434 1.21862 0.91247 0.80346 1.05524 0.82483 1.22744 0.98451 1.02999 0.90253 1.22412 1.00207 0.97667 0.99205 1.21520 0.79744 0.85168 0.83068 1.90701 1.53419 1.28764 1.73892 1.46010 1.54248 1.22711 1.12809 1.23417 0.80889 0.72246 0.87958 1.93060 1.81744 1.48524 1.97038 1.93377 1.69109 1.54639 1.96332 1.92991 1.73980 1.96138 1.55200 0.92353 0.74283 0.84214 0.87603 0.85046 0.88647 0.74782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.36 9.50 21.45 0.20 -47.16 16 2 C 0.01 0.60 5.20 84.66 0.44 1.04 16 3 Si 0.98 38.38 29.54 68.60 2.03 40.41 16 4 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 5 H -0.29 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.56 -25.76 8.46 25.60 0.22 -25.54 16 8 H 0.10 4.12 7.74 -2.92 -0.02 4.10 16 9 C 0.25 11.62 2.21 44.24 0.10 11.72 16 10 H 0.04 2.42 7.58 -2.39 -0.02 2.40 16 11 N -0.70 -23.58 4.98 -446.10 -2.22 -25.80 16 12 C 0.49 15.97 6.54 87.66 0.57 16.54 16 13 O -0.58 -25.57 15.13 -3.01 -0.05 -25.62 16 14 C 0.12 2.40 3.93 44.70 0.18 2.58 16 15 H 0.16 1.85 8.14 -2.38 -0.02 1.83 16 16 C -0.11 -1.46 6.69 31.65 0.21 -1.25 16 17 C -0.16 -3.04 6.85 30.58 0.21 -2.83 16 18 C 0.52 14.73 8.43 87.90 0.74 15.47 16 19 O -0.59 -21.93 18.03 -3.04 -0.05 -21.99 16 20 N -0.71 -17.45 5.45 -442.96 -2.41 -19.86 16 21 C 0.41 20.25 2.81 71.98 0.20 20.45 16 22 F -0.22 -11.00 15.67 44.97 0.70 -10.30 16 23 F -0.15 -8.44 12.91 44.97 0.58 -7.86 16 24 F -0.20 -9.20 16.94 44.97 0.76 -8.44 16 25 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 26 H 0.42 10.74 8.54 -92.70 -0.79 9.95 16 27 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.11 1.43 7.89 -2.39 -0.02 1.41 16 29 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.41 9.88 8.96 -92.71 -0.83 9.05 16 Total: -1.00 -73.11 282.19 2.00 -71.11 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.41 Total: 17.32 kcal Atomic # 6 Polarization: 35.31 SS G_CDS: 2.87 Total: 38.18 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -4.43 Total: -92.82 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.10 Total: -47.61 kcal Atomic # 9 Polarization: -28.64 SS G_CDS: 2.05 Total: -26.59 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -73.11 2.00 -71.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.374 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds