Wall clock time and date at job start Tue Mar 31 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38603 * 120.74079 * 2 1 4 4 C 1.38720 * 119.35721 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 119.56067 * 180.02562 * 4 3 2 6 6 N 1.31622 * 120.87825 * 359.72276 * 4 3 2 7 7 C 1.32822 * 121.60858 * 0.56536 * 6 4 3 8 8 C 1.47995 * 119.72095 * 179.71433 * 7 6 4 9 9 O 1.21562 * 119.99820 * 174.12607 * 8 7 6 10 10 N 1.34774 * 120.00219 * 353.84622 * 8 7 6 11 11 C 1.36787 * 120.00470 * 175.09685 * 10 8 7 12 12 H 1.07994 * 120.00499 * 224.77950 * 11 10 8 13 13 C 1.39109 * 119.99458 * 44.77784 * 11 10 8 14 14 N 1.31330 * 120.00272 * 13.84864 * 13 11 10 15 15 Si 1.86801 * 119.99939 * 193.84376 * 13 11 10 16 16 H 1.48495 * 109.47188 * 90.00245 * 15 13 11 17 17 H 1.48498 * 109.47007 * 210.00329 * 15 13 11 18 18 H 1.48499 * 109.46942 * 329.99968 * 15 13 11 19 19 C 1.46499 * 120.00079 * 355.10089 * 10 8 7 20 20 C 1.53004 * 117.50134 * 182.11338 * 19 10 8 21 21 C 1.53006 * 117.50002 * 113.45384 * 19 10 8 22 22 C 1.38579 * 120.74402 * 180.02562 * 2 1 3 23 23 H 1.08992 * 109.47682 * 269.98176 * 1 2 3 24 24 H 1.09005 * 109.47346 * 29.98429 * 1 2 3 25 25 H 1.09002 * 109.47213 * 149.97972 * 1 2 3 26 26 H 1.08005 * 120.32316 * 0.03751 * 3 2 1 27 27 H 0.96996 * 120.00301 * 184.97657 * 14 13 11 28 28 H 1.08998 * 115.54984 * 327.79188 * 19 10 8 29 29 H 1.09002 * 117.49711 * 0.02562 * 20 19 10 30 30 H 1.09003 * 117.49445 * 145.01879 * 20 19 10 31 31 H 1.08996 * 117.50232 * 214.98012 * 21 19 10 32 32 H 1.09000 * 117.49693 * 359.97438 * 21 19 10 33 33 H 1.07998 * 120.45707 * 359.95645 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1913 0.0000 4 6 3.6023 1.1578 -0.0005 5 17 4.4949 2.6467 0.0001 6 7 4.2503 0.0122 0.0044 7 6 3.6085 -1.1507 -0.0011 8 6 4.3792 -2.4141 -0.0016 9 8 3.8013 -3.4786 0.1012 10 7 5.7213 -2.3848 -0.1216 11 6 6.4425 -3.5428 -0.0216 12 1 7.3446 -3.5677 0.5716 13 6 6.0138 -4.6885 -0.6840 14 7 5.0883 -4.6031 -1.6119 15 14 6.7545 -6.3485 -0.2537 16 1 5.9599 -6.9789 0.8310 17 1 6.7371 -7.2241 -1.4529 18 1 8.1552 -6.1621 0.2029 19 6 6.4079 -1.1126 -0.3591 20 6 7.9272 -1.1519 -0.5356 21 6 7.3200 -0.5843 0.7498 22 6 2.2154 -1.1910 -0.0005 23 1 -0.3634 -0.0003 1.0275 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6929 2.1365 0.0006 27 1 4.7377 -5.4087 -2.0228 28 1 5.8519 -0.3806 -0.9449 29 1 8.4158 -2.1244 -0.4754 30 1 8.3707 -0.4455 -1.2373 31 1 7.3645 0.4953 0.8933 32 1 7.4090 -1.1830 1.6563 33 1 1.6952 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930615622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:35 Heat of formation + Delta-G solvation = 28.103291 kcal Electronic energy + Delta-G solvation = -19788.742974 eV Core-core repulsion = 16648.648868 eV Total energy + Delta-G solvation = -3140.094105 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62829 -39.87864 -37.84913 -37.54614 -35.10697 -34.83255 -32.90653 -31.94416 -28.83259 -27.54669 -25.04609 -23.70682 -23.09134 -22.54987 -21.43004 -18.93972 -17.85847 -17.83988 -17.15264 -16.68973 -16.31532 -16.15215 -15.73926 -15.37708 -14.93702 -14.63465 -14.01054 -13.93624 -13.62752 -13.44016 -13.06726 -12.94914 -12.80753 -12.66174 -12.42763 -12.29355 -12.22036 -12.05053 -11.64439 -11.33402 -10.88527 -10.64658 -10.47152 -9.98819 -9.85575 -9.05028 -8.17774 -6.07359 -0.32053 0.08392 0.75447 1.38500 1.44542 1.51224 2.06625 2.31010 2.80769 2.97192 3.11515 3.32114 3.50458 3.74844 3.90806 3.97296 4.14128 4.24520 4.38347 4.44367 4.55019 4.72017 4.79931 4.84098 4.89346 5.05471 5.13245 5.24914 5.38886 5.42009 5.48026 5.56175 6.14674 6.57469 6.94105 7.11680 7.57556 8.23540 8.83677 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.006738 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.388000 B = 4154.798006 C = 5392.476539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.026 4.026 3 C -0.141 4.141 4 C 0.158 3.842 5 Cl -0.021 7.021 6 N -0.469 5.469 7 C 0.104 3.896 8 C 0.493 3.507 9 O -0.568 6.568 10 N -0.414 5.414 11 C -0.353 4.353 12 H 0.085 0.915 13 C 0.013 3.987 14 N -0.856 5.856 15 Si 0.977 3.023 16 H -0.285 1.285 17 H -0.280 1.280 18 H -0.253 1.253 19 C 0.069 3.931 20 C -0.181 4.181 21 C -0.170 4.170 22 C -0.137 4.137 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.185 0.815 27 H 0.262 0.738 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 14.655 2.283 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.034 4.034 3 C -0.162 4.162 4 C -0.008 4.008 5 Cl 0.008 6.992 6 N -0.184 5.184 7 C -0.033 4.033 8 C 0.282 3.718 9 O -0.449 6.449 10 N -0.131 5.131 11 C -0.481 4.481 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.491 5.491 15 Si 0.801 3.199 16 H -0.212 1.212 17 H -0.205 1.205 18 H -0.176 1.176 19 C -0.036 4.036 20 C -0.218 4.218 21 C -0.209 4.209 22 C -0.159 4.159 23 H 0.115 0.885 24 H 0.121 0.879 25 H 0.094 0.906 26 H 0.202 0.798 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.366 14.110 2.149 15.248 hybrid contribution -0.240 -1.092 0.045 1.119 sum -5.606 13.018 2.194 14.343 Atomic orbital electron populations 1.20936 0.86024 1.05030 1.04600 1.20670 0.99142 0.90428 0.93182 1.22175 0.91485 1.00922 1.01625 1.22109 0.90092 0.88558 1.00049 1.98383 1.76980 1.27313 1.96540 1.67393 1.40470 0.97307 1.13267 1.21391 0.92616 0.90965 0.98316 1.18090 0.83246 0.86933 0.83562 1.90573 1.69397 1.31378 1.53579 1.42845 1.04278 1.05834 1.60153 1.19327 1.10478 0.88480 1.29790 0.89692 1.26213 0.96720 1.03362 0.93088 1.69988 1.27269 1.29925 1.21905 0.85205 0.79060 0.78178 0.77503 1.21181 1.20499 1.17630 1.22259 0.90313 0.88183 1.02841 1.23254 0.95612 1.02512 1.00465 1.23077 1.04607 1.00615 0.92566 1.22121 0.93232 1.00666 0.99882 0.88502 0.87923 0.90604 0.79815 0.92884 0.85292 0.89671 0.86965 0.87133 0.91023 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.06 71.24 0.72 -1.02 16 2 C -0.03 -0.67 5.91 -19.70 -0.12 -0.79 16 3 C -0.14 -3.33 9.58 22.47 0.22 -3.12 16 4 C 0.16 4.76 7.27 84.84 0.62 5.37 16 5 Cl -0.02 -0.51 29.10 -2.72 -0.08 -0.59 16 6 N -0.47 -18.15 6.16 -175.90 -1.08 -19.24 16 7 C 0.10 4.63 6.63 41.85 0.28 4.91 16 8 C 0.49 27.43 7.03 86.83 0.61 28.04 16 9 O -0.57 -35.55 13.67 -3.91 -0.05 -35.61 16 10 N -0.41 -22.52 2.83 -616.23 -1.74 -24.27 16 11 C -0.35 -20.20 7.99 84.13 0.67 -19.52 16 12 H 0.09 4.66 7.20 -2.91 -0.02 4.64 16 13 C 0.01 0.78 4.54 84.98 0.39 1.16 16 14 N -0.86 -53.02 11.26 21.69 0.24 -52.78 16 15 Si 0.98 45.74 29.58 68.60 2.03 47.77 16 16 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.25 -10.89 7.11 99.48 0.71 -10.19 16 19 C 0.07 3.08 4.85 45.00 0.22 3.30 16 20 C -0.18 -7.01 9.80 30.62 0.30 -6.71 16 21 C -0.17 -6.39 10.38 30.62 0.32 -6.08 16 22 C -0.14 -5.07 9.33 22.62 0.21 -4.86 16 23 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.10 1.05 8.10 -2.38 -0.02 1.04 16 25 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 26 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.13 5.70 5.79 -2.39 -0.01 5.69 16 29 H 0.08 3.61 6.70 -2.39 -0.02 3.59 16 30 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.14 5.25 7.65 -2.91 -0.02 5.23 16 Total: -1.00 -73.94 299.79 4.88 -69.06 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 1.14 Total: 14.96 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.42 Total: 0.68 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -2.58 Total: -96.28 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.05 Total: -35.61 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -73.94 4.88 -69.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.163 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds