Wall clock time and date at job start Tue Mar 31 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99842 * 2 1 4 4 H 1.48503 * 109.46938 * 269.99809 * 3 2 1 5 5 H 1.48498 * 109.46851 * 29.99844 * 3 2 1 6 6 H 1.48501 * 109.47203 * 149.99741 * 3 2 1 7 7 C 1.38813 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00162 * 189.10072 * 7 2 1 9 9 N 1.36942 * 119.99720 * 9.09635 * 7 2 1 10 10 C 1.48145 * 127.83690 * 15.57723 * 9 7 2 11 11 C 1.54392 * 104.61364 * 140.41240 * 10 9 7 12 12 H 1.09004 * 117.61056 * 244.77748 * 11 10 9 13 13 C 1.54284 * 104.96209 * 23.86446 * 11 10 9 14 14 H 1.08998 * 121.81479 * 223.07459 * 13 11 10 15 15 C 1.48139 * 127.83598 * 195.57104 * 9 7 2 16 16 C 1.53004 * 118.12255 * 87.19327 * 11 10 9 17 17 H 1.08991 * 117.44297 * 16.10116 * 16 11 10 18 18 N 1.46502 * 117.44062 * 160.80733 * 16 11 10 19 19 C 1.34772 * 119.99486 * 204.99599 * 18 16 11 20 20 O 1.21631 * 120.00388 * 359.97438 * 19 18 16 21 21 C 1.47175 * 119.99839 * 180.02562 * 19 18 16 22 22 C 1.38249 * 128.47606 * 180.02562 * 21 19 18 23 23 N 1.31232 * 111.88761 * 179.97438 * 22 21 19 24 24 N 1.27339 * 120.03936 * 0.02562 * 23 22 21 25 25 S 1.56633 * 109.74152 * 359.69434 * 24 23 22 26 26 H 0.96994 * 120.00247 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.41050 * 21.62859 * 10 9 7 28 28 H 1.09003 * 110.40554 * 259.18982 * 10 9 7 29 29 H 1.08999 * 110.41082 * 338.37486 * 15 9 7 30 30 H 1.09000 * 110.40709 * 100.68808 * 15 9 7 31 31 H 0.96997 * 120.00282 * 24.99569 * 18 16 11 32 32 H 1.07998 * 124.05486 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3386 -2.3807 -0.1864 10 6 -0.0341 -2.5711 -0.7101 11 6 0.0640 -3.8174 -1.6160 12 1 -0.1153 -3.6820 -2.6827 13 6 1.2863 -4.5977 -1.0892 14 1 2.0176 -5.0435 -1.7633 15 6 1.8197 -3.7544 0.0889 16 6 -0.1182 -5.1933 -0.9720 17 1 -0.5680 -5.2279 0.0202 18 7 -0.4524 -6.3133 -1.8553 19 6 -1.1029 -7.3871 -1.3652 20 8 -1.4121 -7.4265 -0.1895 21 6 -1.4382 -8.5125 -2.2524 22 6 -2.0954 -9.6879 -1.9399 23 7 -2.2227 -10.4702 -2.9858 24 7 -1.7623 -10.1044 -4.1153 25 16 -1.1045 -8.6888 -3.9851 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3432 -1.7023 -1.2911 28 1 -0.7316 -2.7501 0.1082 29 1 2.9092 -3.7784 0.1108 30 1 1.4134 -4.1174 1.0330 31 1 -0.2055 -6.2820 -2.7928 32 1 -2.4602 -9.9330 -0.9534 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958320519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:49 Heat of formation + Delta-G solvation = 83.371809 kcal Electronic energy + Delta-G solvation = -18580.429018 eV Core-core repulsion = 15477.067993 eV Total energy + Delta-G solvation = -3103.361025 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94861 -41.10459 -39.77539 -36.17207 -34.50646 -33.21391 -32.05917 -28.93896 -28.80521 -27.51095 -24.75992 -23.10611 -22.09062 -21.63435 -20.87132 -20.29744 -18.89253 -18.53692 -17.66665 -17.01220 -16.74915 -16.34068 -15.85501 -15.58689 -15.39589 -14.95540 -14.62708 -13.85239 -13.79284 -13.36485 -13.27792 -13.04421 -12.87258 -12.70354 -12.15124 -12.01917 -11.89592 -11.68916 -11.55948 -11.26763 -11.20004 -10.93255 -10.84524 -10.69399 -9.85023 -8.90913 -7.90896 -5.27398 -1.39007 -0.27317 0.39766 0.84626 1.48792 1.49848 1.59123 1.63026 1.73818 2.49438 2.82179 2.92385 3.28857 3.47508 3.59653 3.64695 3.80535 3.90719 4.13110 4.40885 4.52525 4.57750 4.72879 4.89123 5.02261 5.26403 5.34352 5.45566 5.53047 5.66653 6.17968 6.20601 6.54327 6.87055 7.01896 7.68750 8.46373 9.22848 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.050408 B = 0.003160 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.331824 B = 8859.964759 C = 8996.359702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.176 4.176 12 H 0.132 0.868 13 C -0.165 4.165 14 H 0.140 0.860 15 C 0.146 3.854 16 C 0.120 3.880 17 H 0.115 0.885 18 N -0.673 5.673 19 C 0.609 3.391 20 O -0.551 6.551 21 C -0.303 4.303 22 C 0.081 3.919 23 N -0.276 5.276 24 N -0.286 5.286 25 S 0.514 5.486 26 H 0.250 0.750 27 H 0.060 0.940 28 H -0.002 1.002 29 H 0.064 0.936 30 H 0.020 0.980 31 H 0.417 0.583 32 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -16.955 -9.830 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.197 4.197 12 H 0.150 0.850 13 C -0.187 4.187 14 H 0.158 0.842 15 C 0.021 3.979 16 C 0.013 3.987 17 H 0.133 0.867 18 N -0.323 5.323 19 C 0.394 3.606 20 O -0.429 6.429 21 C -0.444 4.444 22 C -0.087 4.087 23 N -0.138 5.138 24 N -0.268 5.268 25 S 0.649 5.351 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.016 0.984 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.254 0.746 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.869 -17.371 -10.829 20.489 hybrid contribution -0.046 1.322 1.368 1.902 sum -0.915 -16.050 -9.462 18.654 Atomic orbital electron populations 1.70083 1.06511 1.25772 1.57099 1.25731 0.96470 1.01263 1.02030 0.85061 0.77700 0.78851 0.77592 1.21004 1.22312 1.19270 1.19394 0.91417 0.83487 1.42658 0.89945 1.45486 1.13815 1.01138 1.73697 1.20822 0.86031 0.93791 0.93277 1.24400 1.03691 0.90797 1.00849 0.85010 1.24308 0.90945 1.01628 1.01772 0.84185 1.21281 0.98089 0.84354 0.94197 1.21468 0.97916 0.84266 0.95005 0.86683 1.44989 1.57461 1.16497 1.13347 1.16596 0.77359 0.80705 0.85956 1.90868 1.54512 1.80194 1.17363 1.27814 1.13087 1.01981 1.01532 1.24763 0.95552 0.87753 1.00675 1.70785 1.18705 1.29852 0.94487 1.78652 1.15769 1.12469 1.19899 1.82276 1.40044 1.13437 0.99393 0.94101 0.92192 0.98431 0.91805 0.96180 0.74582 0.75383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.73 10.86 21.65 0.24 -55.50 16 2 C -0.06 -3.39 5.40 84.86 0.46 -2.93 16 3 Si 0.98 44.36 29.56 68.60 2.03 46.39 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.24 -13.12 10.35 84.03 0.87 -12.25 16 8 H 0.08 4.28 7.84 -2.91 -0.02 4.25 16 9 N -0.62 -30.73 3.38 -688.17 -2.33 -33.05 16 10 C 0.19 8.76 5.70 86.54 0.49 9.25 16 11 C -0.18 -5.83 7.06 -9.88 -0.07 -5.90 16 12 H 0.13 3.69 8.14 -2.38 -0.02 3.67 16 13 C -0.17 -4.99 7.06 -9.89 -0.07 -5.06 16 14 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 15 C 0.15 5.75 7.04 86.53 0.61 6.36 16 16 C 0.12 3.45 5.98 45.00 0.27 3.72 16 17 H 0.12 3.95 7.40 -2.39 -0.02 3.94 16 18 N -0.67 -13.98 5.56 -446.03 -2.48 -16.46 16 19 C 0.61 14.03 7.80 86.59 0.68 14.71 16 20 O -0.55 -17.28 16.55 -4.13 -0.07 -17.35 16 21 C -0.30 -5.24 6.81 24.62 0.17 -5.08 16 22 C 0.08 1.40 11.55 84.78 0.98 2.38 16 23 N -0.28 -5.53 11.54 -57.87 -0.67 -6.19 16 24 N -0.29 -5.30 12.51 37.02 0.46 -4.84 16 25 S 0.51 6.22 23.05 -56.49 -1.30 4.91 16 26 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.06 3.18 6.51 -2.39 -0.02 3.17 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.42 5.68 8.25 -92.71 -0.77 4.91 16 32 H 0.23 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -70.17 296.16 0.67 -69.50 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.41 Total: 7.39 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.38 Total: 5.20 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -4.77 Total: -116.05 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.07 Total: -17.35 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -1.30 Total: 4.91 kcal Total: -70.17 0.67 -69.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958320519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.867 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds