Wall clock time and date at job start Tue Mar 31 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99749 * 2 1 4 4 H 1.48499 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47889 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46867 * 60.00956 * 3 2 1 7 7 C 1.38812 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 189.09694 * 7 2 1 9 9 N 1.36943 * 120.00043 * 9.09710 * 7 2 1 10 10 C 1.48152 * 127.83581 * 15.57100 * 9 7 2 11 11 C 1.54387 * 104.61514 * 140.41277 * 10 9 7 12 12 H 1.08993 * 117.62176 * 242.76820 * 11 10 9 13 13 C 1.54154 * 106.22768 * 23.25595 * 11 10 9 14 14 H 1.08998 * 121.78798 * 221.54926 * 13 11 10 15 15 C 1.48139 * 127.83965 * 195.57339 * 9 7 2 16 16 C 1.52994 * 59.75330 * 113.48436 * 13 11 10 17 17 H 1.09003 * 117.44196 * 252.37356 * 16 13 11 18 18 N 1.46501 * 117.44465 * 107.62839 * 16 13 11 19 19 C 1.34777 * 120.00170 * 135.99478 * 18 16 13 20 20 O 1.21600 * 120.00032 * 0.02562 * 19 18 16 21 21 C 1.47452 * 119.99817 * 179.97438 * 19 18 16 22 22 C 1.37977 * 124.15004 * 179.72557 * 21 19 18 23 23 S 1.72107 * 104.03107 * 180.26881 * 22 21 19 24 24 N 1.56401 * 96.15465 * 0.02562 * 23 22 21 25 25 N 1.27420 * 109.87209 * 0.02562 * 24 23 22 26 26 H 0.96995 * 120.00451 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.40958 * 21.63087 * 10 9 7 28 28 H 1.08993 * 110.50653 * 259.25330 * 10 9 7 29 29 H 1.08998 * 110.40630 * 338.37009 * 15 9 7 30 30 H 1.09000 * 110.40695 * 100.68273 * 15 9 7 31 31 H 0.97002 * 119.99462 * 316.00034 * 18 16 13 32 32 H 1.07998 * 127.98865 * 0.25037 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2123 6 1 1.8914 2.3963 1.2127 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3386 -2.3806 -0.1886 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6194 12 1 -0.1484 -3.6862 -2.6806 13 6 1.2891 -4.6117 -1.1277 14 1 1.9897 -5.0746 -1.8226 15 6 1.8197 -3.7546 0.0856 16 6 -0.1182 -5.1924 -0.9766 17 1 -0.5427 -5.2260 0.0268 18 7 -0.4877 -6.3046 -1.8557 19 6 -1.1413 -7.3714 -1.3544 20 8 -1.4247 -7.4106 -0.1725 21 6 -1.5136 -8.4905 -2.2394 22 6 -2.1773 -9.6241 -1.8172 23 16 -2.3359 -10.5711 -3.2455 24 7 -1.6155 -9.5607 -4.1974 25 7 -1.2450 -8.5344 -3.5394 26 1 -0.4850 0.8400 0.0004 27 1 -0.3434 -1.7011 -1.2926 28 1 -0.7332 -2.7493 0.1046 29 1 2.9092 -3.7785 0.1074 30 1 1.4133 -4.1183 1.0294 31 1 -0.2619 -6.2732 -2.7985 32 1 -2.5184 -9.8623 -0.8205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961365630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:56 Heat of formation + Delta-G solvation = 104.352479 kcal Electronic energy + Delta-G solvation = -18633.863706 eV Core-core repulsion = 15531.412471 eV Total energy + Delta-G solvation = -3102.451235 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35636 -39.57960 -38.19380 -34.57454 -32.84933 -32.26337 -30.29035 -27.48452 -27.02852 -25.77651 -24.13022 -21.64015 -20.97344 -20.44368 -19.40311 -19.16721 -17.11866 -16.77613 -16.30474 -16.24605 -15.76041 -14.74875 -14.57368 -14.41827 -13.64474 -13.28061 -12.95560 -12.75464 -12.44987 -12.25817 -11.59544 -11.50604 -11.01376 -10.85570 -10.71980 -10.43092 -10.40046 -10.29874 -10.27641 -10.23711 -10.10457 -9.74723 -9.25410 -8.76634 -8.39513 -6.88529 -5.80941 -3.15336 -0.28968 0.55801 1.16179 1.17628 2.92878 2.94912 3.37862 3.43913 3.46434 3.53632 4.29713 4.35966 4.45854 4.62608 5.00985 5.13849 5.34502 5.38263 5.55960 5.71730 5.83725 6.06284 6.19258 6.49623 6.67226 6.70058 6.87141 7.09929 7.33215 7.47046 7.52389 7.70894 8.01964 8.19006 9.09654 9.72408 10.48959 11.33491 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.057246 B = 0.002998 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.001120 B = 9337.579466 C = 9402.997823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.177 4.177 12 H 0.104 0.896 13 C -0.183 4.183 14 H 0.109 0.891 15 C 0.158 3.842 16 C 0.089 3.911 17 H 0.135 0.865 18 N -0.675 5.675 19 C 0.605 3.395 20 O -0.523 6.523 21 C -0.018 4.018 22 C -0.234 4.234 23 S 0.457 5.543 24 N -0.290 5.290 25 N -0.211 5.211 26 H 0.254 0.746 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.409 0.591 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 -21.341 -6.264 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.198 4.198 12 H 0.122 0.878 13 C -0.204 4.204 14 H 0.127 0.873 15 C 0.031 3.969 16 C -0.017 4.017 17 H 0.153 0.847 18 N -0.323 5.323 19 C 0.385 3.615 20 O -0.398 6.398 21 C -0.165 4.165 22 C -0.392 4.392 23 S 0.593 5.407 24 N -0.270 5.270 25 N -0.081 5.081 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.244 0.756 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.373 -21.733 -7.165 23.506 hybrid contribution 0.589 1.569 0.708 1.819 sum -4.784 -20.164 -6.457 21.706 Atomic orbital electron populations 1.69901 1.05062 1.25378 1.55720 1.24907 0.95658 0.98019 1.01682 0.86030 0.78871 0.83462 0.77277 1.20352 1.21617 1.21664 1.19041 0.90874 0.82231 1.43367 0.90421 1.45132 1.13322 1.00009 1.73123 1.21080 0.86992 0.92379 0.93654 1.24650 1.02194 0.92211 1.00754 0.87849 1.25112 0.90265 1.01934 1.03094 0.87331 1.21712 0.97252 0.85622 0.92356 1.22009 0.99063 0.84992 0.95617 0.84706 1.45241 1.56279 1.17745 1.13009 1.16575 0.78425 0.80545 0.85905 1.90851 1.54830 1.79215 1.14896 1.22749 1.04129 0.98683 0.90982 1.28902 1.03637 0.97686 1.08938 1.81531 1.42127 1.25048 0.92030 1.78665 1.17825 1.03836 1.26681 1.71533 1.16588 1.15039 1.04961 0.93553 0.88986 0.95476 0.93036 0.95044 0.75561 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.67 10.86 55.49 0.60 -26.07 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.86 29.56 -169.99 -5.03 16.83 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -15.14 3.38 -166.70 -0.56 -15.70 16 10 C 0.19 4.43 5.70 -2.41 -0.01 4.42 16 11 C -0.18 -3.34 6.97 -89.29 -0.62 -3.97 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 C -0.18 -3.25 7.34 -87.43 -0.64 -3.89 16 14 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 15 C 0.16 3.31 7.10 -0.55 0.00 3.31 16 16 C 0.09 1.50 5.93 -67.93 -0.40 1.10 16 17 H 0.14 2.51 7.40 -51.93 -0.38 2.13 16 18 N -0.68 -9.72 5.56 -54.87 -0.31 -10.03 16 19 C 0.60 8.78 7.81 -12.51 -0.10 8.69 16 20 O -0.52 -8.98 16.36 5.28 0.09 -8.90 16 21 C -0.02 -0.21 6.87 -83.78 -0.58 -0.79 16 22 C -0.23 -1.95 11.21 30.64 0.34 -1.60 16 23 S 0.46 2.92 23.38 -107.50 -2.51 0.41 16 24 N -0.29 -3.05 12.49 60.35 0.75 -2.30 16 25 N -0.21 -2.54 11.24 32.73 0.37 -2.17 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.41 5.23 8.41 -40.82 -0.34 4.88 16 32 H 0.21 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -32.26 296.07 -7.55 -39.81 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.15 Total: 3.11 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.26 Total: 0.55 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.86 Total: -56.27 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.51 Total: 0.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.26 -7.55 -39.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961365630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.158 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds