Wall clock time and date at job start Tue Mar 31 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99749 * 2 1 4 4 H 1.48499 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47889 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46867 * 60.00956 * 3 2 1 7 7 C 1.38812 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 189.09694 * 7 2 1 9 9 N 1.36943 * 120.00043 * 9.09710 * 7 2 1 10 10 C 1.48152 * 127.83581 * 15.57100 * 9 7 2 11 11 C 1.54387 * 104.61514 * 140.41277 * 10 9 7 12 12 H 1.08993 * 117.62176 * 242.76820 * 11 10 9 13 13 C 1.54154 * 106.22768 * 23.25595 * 11 10 9 14 14 H 1.08998 * 121.78798 * 221.54926 * 13 11 10 15 15 C 1.48139 * 127.83965 * 195.57339 * 9 7 2 16 16 C 1.52994 * 59.75330 * 113.48436 * 13 11 10 17 17 H 1.09003 * 117.44196 * 252.37356 * 16 13 11 18 18 N 1.46501 * 117.44465 * 107.62839 * 16 13 11 19 19 C 1.34777 * 120.00170 * 135.99478 * 18 16 13 20 20 O 1.21600 * 120.00032 * 0.02562 * 19 18 16 21 21 C 1.47452 * 119.99817 * 179.97438 * 19 18 16 22 22 C 1.37977 * 124.15004 * 179.72557 * 21 19 18 23 23 S 1.72107 * 104.03107 * 180.26881 * 22 21 19 24 24 N 1.56401 * 96.15465 * 0.02562 * 23 22 21 25 25 N 1.27420 * 109.87209 * 0.02562 * 24 23 22 26 26 H 0.96995 * 120.00451 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.40958 * 21.63087 * 10 9 7 28 28 H 1.08993 * 110.50653 * 259.25330 * 10 9 7 29 29 H 1.08998 * 110.40630 * 338.37009 * 15 9 7 30 30 H 1.09000 * 110.40695 * 100.68273 * 15 9 7 31 31 H 0.97002 * 119.99462 * 316.00034 * 18 16 13 32 32 H 1.07998 * 127.98865 * 0.25037 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2123 6 1 1.8914 2.3963 1.2127 7 6 2.0103 -1.2021 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3386 -2.3806 -0.1886 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6194 12 1 -0.1484 -3.6862 -2.6806 13 6 1.2891 -4.6117 -1.1277 14 1 1.9897 -5.0746 -1.8226 15 6 1.8197 -3.7546 0.0856 16 6 -0.1182 -5.1924 -0.9766 17 1 -0.5427 -5.2260 0.0268 18 7 -0.4877 -6.3046 -1.8557 19 6 -1.1413 -7.3714 -1.3544 20 8 -1.4247 -7.4106 -0.1725 21 6 -1.5136 -8.4905 -2.2394 22 6 -2.1773 -9.6241 -1.8172 23 16 -2.3359 -10.5711 -3.2455 24 7 -1.6155 -9.5607 -4.1974 25 7 -1.2450 -8.5344 -3.5394 26 1 -0.4850 0.8400 0.0004 27 1 -0.3434 -1.7011 -1.2926 28 1 -0.7332 -2.7493 0.1046 29 1 2.9092 -3.7785 0.1074 30 1 1.4133 -4.1183 1.0294 31 1 -0.2619 -6.2732 -2.7985 32 1 -2.5184 -9.8623 -0.8205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961365630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:56 Heat of formation + Delta-G solvation = 80.774686 kcal Electronic energy + Delta-G solvation = -18634.886116 eV Core-core repulsion = 15531.412471 eV Total energy + Delta-G solvation = -3103.473645 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18765 -40.86247 -39.63275 -36.17028 -34.42752 -33.22122 -32.07062 -28.81855 -28.31271 -27.55544 -25.31600 -23.17116 -22.03010 -21.87692 -20.93541 -20.28178 -18.85297 -18.04374 -17.41362 -17.12728 -16.76682 -16.59569 -15.70117 -15.67998 -15.33874 -14.93150 -14.62843 -13.82626 -13.68908 -13.36534 -13.24965 -13.07363 -12.87614 -12.74489 -12.11444 -11.98986 -11.91104 -11.71423 -11.59192 -11.28876 -11.18859 -10.90925 -10.88893 -10.72963 -9.81432 -8.92928 -7.92070 -5.28902 -0.94887 -0.06617 0.26227 0.52553 1.47646 1.48396 1.59581 1.80524 1.89090 2.48294 2.67377 2.83329 3.28524 3.56607 3.61780 3.78046 3.79308 3.91672 4.05858 4.27600 4.35656 4.49745 4.74939 4.86252 4.98558 5.24746 5.33736 5.43455 5.49770 5.64127 6.15518 6.17285 6.50878 6.90613 7.00000 7.66810 8.45052 9.22076 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.057246 B = 0.002998 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.001120 B = 9337.579466 C = 9402.997823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.190 3.810 11 C -0.180 4.180 12 H 0.122 0.878 13 C -0.163 4.163 14 H 0.138 0.862 15 C 0.150 3.850 16 C 0.112 3.888 17 H 0.118 0.882 18 N -0.669 5.669 19 C 0.607 3.393 20 O -0.555 6.555 21 C -0.043 4.043 22 C -0.235 4.235 23 S 0.573 5.427 24 N -0.332 5.332 25 N -0.234 5.234 26 H 0.250 0.750 27 H 0.059 0.941 28 H 0.001 0.999 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.419 0.581 32 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -23.742 -7.319 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.064 3.936 11 C -0.201 4.201 12 H 0.140 0.860 13 C -0.185 4.185 14 H 0.156 0.844 15 C 0.025 3.975 16 C 0.006 3.994 17 H 0.135 0.865 18 N -0.317 5.317 19 C 0.390 3.610 20 O -0.432 6.432 21 C -0.191 4.191 22 C -0.392 4.392 23 S 0.708 5.292 24 N -0.312 5.312 25 N -0.103 5.103 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.257 0.743 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.998 -24.176 -8.250 26.029 hybrid contribution 0.378 2.091 1.069 2.378 sum -4.620 -22.085 -7.182 23.678 Atomic orbital electron populations 1.70096 1.06570 1.25747 1.57102 1.25765 0.96511 1.01365 1.01993 0.84967 0.78303 0.79023 0.76727 1.18799 1.21715 1.21908 1.19434 0.91436 0.83412 1.42615 0.89868 1.45419 1.13765 1.01173 1.73719 1.20795 0.86165 0.93465 0.93166 1.24316 1.04025 0.91095 1.00672 0.86017 1.25019 0.90645 1.01128 1.01659 0.84418 1.21844 0.98022 0.84125 0.93553 1.21562 0.98133 0.84717 0.95021 0.86464 1.45080 1.56440 1.17081 1.13122 1.16890 0.77356 0.80856 0.85872 1.90831 1.55989 1.79999 1.16414 1.22361 1.06624 0.98965 0.91172 1.29301 1.01890 0.96999 1.11000 1.81149 1.38145 1.21188 0.88739 1.78299 1.19547 1.04797 1.28599 1.71570 1.17657 1.16153 1.04956 0.94073 0.92277 0.98131 0.91872 0.95453 0.74324 0.75369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.25 10.86 21.65 0.24 -57.01 16 2 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 3 Si 0.98 45.58 29.56 68.60 2.03 47.60 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.52 10.35 84.03 0.87 -12.65 16 8 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 9 N -0.62 -32.15 3.38 -681.32 -2.30 -34.45 16 10 C 0.19 9.47 5.70 86.53 0.49 9.96 16 11 C -0.18 -6.79 6.97 -9.93 -0.07 -6.85 16 12 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 13 C -0.16 -5.61 7.34 -8.72 -0.06 -5.67 16 14 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 15 C 0.15 6.30 7.10 87.75 0.62 6.92 16 16 C 0.11 3.74 5.93 44.99 0.27 4.01 16 17 H 0.12 4.44 7.40 -2.39 -0.02 4.42 16 18 N -0.67 -18.53 5.56 -445.78 -2.48 -21.01 16 19 C 0.61 17.10 7.81 86.67 0.68 17.77 16 20 O -0.56 -18.84 16.36 -4.03 -0.07 -18.91 16 21 C -0.04 -0.95 6.87 41.36 0.28 -0.67 16 22 C -0.24 -3.26 11.21 67.76 0.76 -2.50 16 23 S 0.57 5.29 23.38 -56.49 -1.32 3.97 16 24 N -0.33 -6.21 12.49 37.02 0.46 -5.75 16 25 N -0.23 -5.26 11.24 -50.35 -0.57 -5.83 16 26 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.06 3.31 6.51 -2.39 -0.02 3.29 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.42 10.07 8.41 -92.71 -0.78 9.29 16 32 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -72.11 296.07 0.68 -71.42 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.39 Total: 12.74 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.30 Total: 7.21 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -4.65 Total: -124.05 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.07 Total: -18.91 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.32 Total: 3.97 kcal Total: -72.11 0.68 -71.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961365630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.198 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds