Wall clock time and date at job start Tue Mar 31 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47220 * 299.99830 * 3 2 1 6 6 H 1.48493 * 109.47246 * 59.99950 * 3 2 1 7 7 C 1.38815 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.48985 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11799 * 155.36271 * 10 9 7 12 12 N 1.46498 * 113.74145 * 137.95404 * 11 10 9 13 13 C 1.34785 * 119.99794 * 156.92730 * 12 11 10 14 14 O 1.21562 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.47768 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.39623 * 120.15854 * 0.02562 * 15 13 12 17 17 C 1.37895 * 119.86636 * 180.02562 * 16 15 13 18 18 C 1.38416 * 120.18092 * 0.02562 * 17 16 15 19 19 C 1.38262 * 120.32101 * 359.97438 * 18 17 16 20 20 C 1.38152 * 120.13013 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.09637 * 180.02562 * 20 19 18 22 22 C 1.47814 * 134.46102 * 359.87119 * 9 7 2 23 23 H 0.97006 * 119.99738 * 359.97438 * 1 2 3 24 24 H 1.09005 * 113.77308 * 41.06473 * 10 9 7 25 25 H 1.08997 * 113.77373 * 269.66171 * 10 9 7 26 26 H 1.08994 * 113.73947 * 269.15634 * 11 10 9 27 27 H 0.96998 * 120.00557 * 336.92797 * 12 11 10 28 28 H 1.08002 * 120.06268 * 0.29545 * 16 15 13 29 29 H 1.08006 * 119.90717 * 179.97438 * 17 16 15 30 30 H 1.08004 * 119.83871 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.93710 * 180.02562 * 19 18 17 32 32 H 1.09001 * 113.77085 * 90.37330 * 22 9 7 33 33 H 1.09001 * 113.83202 * 318.91744 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 1.7200 -3.8101 -0.0015 11 6 0.3473 -4.0832 0.6398 12 7 -0.3335 -5.2613 0.0968 13 6 -1.2729 -5.8934 0.8280 14 8 -1.5550 -5.4861 1.9381 15 6 -1.9600 -7.0814 0.2801 16 6 -1.6381 -7.5523 -0.9943 17 6 -2.2834 -8.6611 -1.4998 18 6 -3.2490 -9.3075 -0.7477 19 6 -3.5736 -8.8477 0.5152 20 6 -2.9346 -7.7386 1.0349 21 17 -3.3425 -7.1625 2.6209 22 6 -0.1059 -2.7570 0.0023 23 1 -0.4850 0.8401 0.0004 24 1 2.5627 -4.0327 0.6531 25 1 1.8310 -4.2346 -0.9992 26 1 0.3605 -4.0646 1.7295 27 1 -0.1081 -5.5866 -0.7888 28 1 -0.8822 -7.0516 -1.5811 29 1 -2.0353 -9.0257 -2.4858 30 1 -3.7512 -10.1753 -1.1493 31 1 -4.3277 -9.3571 1.0969 32 1 -0.5320 -2.8717 -0.9944 33 1 -0.7185 -2.1401 0.6598 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031293790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:20 Heat of formation + Delta-G solvation = 51.496552 kcal Electronic energy + Delta-G solvation = -18805.851174 eV Core-core repulsion = 15666.771477 eV Total energy + Delta-G solvation = -3139.079697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18107 -38.64668 -37.30770 -36.35665 -33.63511 -32.07217 -31.09216 -30.89823 -27.45236 -24.83713 -24.44651 -23.09557 -22.42015 -20.39818 -19.68943 -17.95860 -16.80602 -16.50407 -15.97825 -15.16532 -15.05160 -14.97186 -14.61343 -14.20609 -13.81193 -13.60436 -13.25932 -12.63980 -12.13379 -11.91711 -11.73878 -11.54785 -11.45754 -11.43325 -11.03817 -10.85907 -10.78555 -10.42898 -10.00519 -9.55471 -9.32310 -9.28081 -8.94327 -8.82017 -8.41672 -6.92809 -5.77885 -3.12056 0.58814 0.92970 2.13748 2.89119 3.36325 3.40805 3.45615 3.47272 3.69154 4.43548 4.46050 4.56322 4.69728 4.99148 5.04175 5.15177 5.29313 5.47364 5.48665 5.57994 5.86391 5.88406 6.01803 6.06485 6.20175 6.39353 6.42368 6.55092 6.74098 7.23567 7.35463 7.55922 7.84113 7.95842 8.51080 9.02105 9.68517 10.54759 11.38852 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.003723 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.730894 B = 7519.021324 C = 7983.272114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.093 3.907 12 N -0.710 5.710 13 C 0.547 3.453 14 O -0.515 6.515 15 C -0.122 4.122 16 C -0.076 4.076 17 C -0.126 4.126 18 C -0.089 4.089 19 C -0.124 4.124 20 C 0.011 3.989 21 Cl -0.031 7.031 22 C 0.154 3.846 23 H 0.254 0.746 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.112 0.888 27 H 0.394 0.606 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.028 0.972 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -20.723 -2.897 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.011 4.011 12 N -0.361 5.361 13 C 0.332 3.668 14 O -0.391 6.391 15 C -0.126 4.126 16 C -0.095 4.095 17 C -0.144 4.144 18 C -0.107 4.107 19 C -0.142 4.142 20 C -0.017 4.017 21 Cl -0.001 7.001 22 C 0.028 3.972 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.130 0.870 27 H 0.228 0.772 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.046 0.954 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.397 -19.973 -1.921 21.060 hybrid contribution 0.484 0.784 -0.605 1.102 sum -5.913 -19.189 -2.526 20.237 Atomic orbital electron populations 1.69843 1.05060 1.25393 1.56129 1.24822 0.95685 0.97650 1.02129 0.86022 0.78708 0.83558 0.77302 1.20396 1.21708 1.21587 1.19029 0.90276 0.81599 1.44442 0.89982 1.45720 1.02425 0.99149 1.86056 1.22870 0.94657 0.86892 0.97016 1.23938 0.93237 0.83921 1.00023 1.46073 1.39613 1.30856 1.19571 1.18089 0.80302 0.82833 0.85577 1.90871 1.63273 1.65951 1.19052 1.20016 0.99072 0.98126 0.95418 1.21364 0.98681 0.95844 0.93581 1.21193 0.96830 0.95856 1.00524 1.21287 0.96644 0.99366 0.93444 1.21082 1.00780 0.95776 0.96592 1.21099 0.96304 0.95360 0.88897 1.98428 1.92054 1.88061 1.21563 1.22720 0.88126 0.89139 0.97222 0.93561 0.93178 0.94780 0.86980 0.77160 0.84627 0.84852 0.84832 0.84490 0.95375 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 11.39 55.49 0.63 -27.03 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.37 10.70 -15.06 -0.16 -6.53 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.63 3.70 -177.85 -0.66 -16.29 16 10 C 0.11 2.24 8.69 -2.97 -0.03 2.22 16 11 C 0.09 1.83 4.40 -70.13 -0.31 1.52 16 12 N -0.71 -11.12 5.32 -56.30 -0.30 -11.42 16 13 C 0.55 9.05 7.77 -12.36 -0.10 8.95 16 14 O -0.52 -10.34 13.59 5.31 0.07 -10.27 16 15 C -0.12 -1.62 5.88 -104.94 -0.62 -2.23 16 16 C -0.08 -0.74 9.54 -39.19 -0.37 -1.12 16 17 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 18 C -0.09 -0.67 10.04 -39.51 -0.40 -1.06 16 19 C -0.12 -1.16 9.82 -39.60 -0.39 -1.55 16 20 C 0.01 0.15 6.35 -39.07 -0.25 -0.10 16 21 Cl -0.03 -0.44 26.02 -51.86 -1.35 -1.79 16 22 C 0.15 3.72 7.33 -2.83 -0.02 3.70 16 23 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 26 H 0.11 2.39 7.50 -51.93 -0.39 2.00 16 27 H 0.39 4.90 6.75 -40.82 -0.28 4.62 16 28 H 0.14 1.05 6.41 -52.49 -0.34 0.72 16 29 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 30 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 31 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 2.14 7.17 -51.93 -0.37 1.77 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -33.73 299.47 -8.70 -42.42 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.45 Total: 0.48 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.13 Total: 2.16 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.33 Total: -54.74 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.35 Total: -1.79 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.73 -8.70 -42.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031293790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.921 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds