Wall clock time and date at job start Tue Mar 31 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47220 * 299.99830 * 3 2 1 6 6 H 1.48493 * 109.47246 * 59.99950 * 3 2 1 7 7 C 1.38815 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.48985 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11799 * 155.36271 * 10 9 7 12 12 N 1.46498 * 113.74145 * 137.95404 * 11 10 9 13 13 C 1.34785 * 119.99794 * 156.92730 * 12 11 10 14 14 O 1.21562 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.47768 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.39623 * 120.15854 * 0.02562 * 15 13 12 17 17 C 1.37895 * 119.86636 * 180.02562 * 16 15 13 18 18 C 1.38416 * 120.18092 * 0.02562 * 17 16 15 19 19 C 1.38262 * 120.32101 * 359.97438 * 18 17 16 20 20 C 1.38152 * 120.13013 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.09637 * 180.02562 * 20 19 18 22 22 C 1.47814 * 134.46102 * 359.87119 * 9 7 2 23 23 H 0.97006 * 119.99738 * 359.97438 * 1 2 3 24 24 H 1.09005 * 113.77308 * 41.06473 * 10 9 7 25 25 H 1.08997 * 113.77373 * 269.66171 * 10 9 7 26 26 H 1.08994 * 113.73947 * 269.15634 * 11 10 9 27 27 H 0.96998 * 120.00557 * 336.92797 * 12 11 10 28 28 H 1.08002 * 120.06268 * 0.29545 * 16 15 13 29 29 H 1.08006 * 119.90717 * 179.97438 * 17 16 15 30 30 H 1.08004 * 119.83871 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.93710 * 180.02562 * 19 18 17 32 32 H 1.09001 * 113.77085 * 90.37330 * 22 9 7 33 33 H 1.09001 * 113.83202 * 318.91744 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 1.7200 -3.8101 -0.0015 11 6 0.3473 -4.0832 0.6398 12 7 -0.3335 -5.2613 0.0968 13 6 -1.2729 -5.8934 0.8280 14 8 -1.5550 -5.4861 1.9381 15 6 -1.9600 -7.0814 0.2801 16 6 -1.6381 -7.5523 -0.9943 17 6 -2.2834 -8.6611 -1.4998 18 6 -3.2490 -9.3075 -0.7477 19 6 -3.5736 -8.8477 0.5152 20 6 -2.9346 -7.7386 1.0349 21 17 -3.3425 -7.1625 2.6209 22 6 -0.1059 -2.7570 0.0023 23 1 -0.4850 0.8401 0.0004 24 1 2.5627 -4.0327 0.6531 25 1 1.8310 -4.2346 -0.9992 26 1 0.3605 -4.0646 1.7295 27 1 -0.1081 -5.5866 -0.7888 28 1 -0.8822 -7.0516 -1.5811 29 1 -2.0353 -9.0257 -2.4858 30 1 -3.7512 -10.1753 -1.1493 31 1 -4.3277 -9.3571 1.0969 32 1 -0.5320 -2.8717 -0.9944 33 1 -0.7185 -2.1401 0.6598 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031293790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:19 Heat of formation + Delta-G solvation = 28.629282 kcal Electronic energy + Delta-G solvation = -18806.842773 eV Core-core repulsion = 15666.771477 eV Total energy + Delta-G solvation = -3140.071297 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33587 -39.89873 -38.77772 -37.32267 -35.20542 -33.88892 -32.13676 -31.65007 -29.37997 -26.63304 -25.78595 -24.34246 -23.44214 -21.61211 -21.36544 -19.03274 -18.78548 -17.59782 -17.12466 -16.95414 -16.22537 -15.98807 -15.94168 -15.64371 -15.05592 -14.67156 -14.63276 -14.13055 -13.66322 -13.30896 -13.22011 -12.85350 -12.84066 -12.66383 -12.44257 -12.43040 -12.27776 -12.05267 -11.88550 -11.53178 -10.91385 -10.56073 -10.16226 -9.92131 -9.70640 -8.98579 -7.92855 -5.28442 -0.25774 0.21225 1.22424 1.45297 1.47267 1.57577 1.86529 2.10133 2.49093 2.76415 3.24577 3.37530 3.65816 3.75211 3.84915 4.05778 4.29168 4.32360 4.35467 4.50184 4.56499 4.73433 4.84308 4.89846 5.10470 5.16338 5.22653 5.26253 5.39210 5.47328 5.68451 5.78743 5.88173 6.57933 6.87041 7.25745 7.57230 8.49951 9.24197 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.003723 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.730894 B = 7519.021324 C = 7983.272114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.092 0.908 9 N -0.639 5.639 10 C 0.124 3.876 11 C 0.122 3.878 12 N -0.697 5.697 13 C 0.543 3.457 14 O -0.560 6.560 15 C -0.151 4.151 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.072 4.072 19 C -0.126 4.126 20 C -0.012 4.012 21 Cl -0.063 7.063 22 C 0.152 3.848 23 H 0.248 0.752 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.413 0.587 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.174 0.826 31 H 0.155 0.845 32 H 0.027 0.973 33 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 -23.391 -5.210 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.363 4.363 8 H 0.110 0.890 9 N -0.366 5.366 10 C -0.002 4.002 11 C 0.016 3.984 12 N -0.350 5.350 13 C 0.331 3.669 14 O -0.439 6.439 15 C -0.155 4.155 16 C -0.093 4.093 17 C -0.134 4.134 18 C -0.090 4.090 19 C -0.144 4.144 20 C -0.039 4.039 21 Cl -0.034 7.034 22 C 0.026 3.974 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.251 0.749 28 H 0.173 0.827 29 H 0.189 0.811 30 H 0.192 0.808 31 H 0.172 0.828 32 H 0.045 0.955 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.560 -22.706 -4.270 23.764 hybrid contribution 0.187 1.435 0.034 1.447 sum -5.373 -21.271 -4.236 22.345 Atomic orbital electron populations 1.70057 1.06739 1.25635 1.58055 1.25725 0.96532 1.01249 1.02731 0.84943 0.78348 0.78987 0.76628 1.18410 1.21800 1.22168 1.19488 0.91023 0.82858 1.42888 0.89041 1.46045 1.03272 1.00882 1.86374 1.23016 0.94809 0.83511 0.98828 1.23173 0.93196 0.83507 0.98565 1.45759 1.39341 1.29480 1.20410 1.18709 0.79728 0.83491 0.84988 1.90849 1.64527 1.67428 1.21107 1.19823 1.00507 0.97752 0.97389 1.21649 0.99060 0.96502 0.92068 1.21672 0.95556 0.94360 1.01829 1.21813 0.95577 0.99648 0.92004 1.21384 1.00704 0.94632 0.97713 1.21380 0.97634 0.96981 0.87947 1.98410 1.92340 1.88650 1.23981 1.22592 0.87342 0.91032 0.96464 0.94304 0.91663 0.91307 0.89121 0.74908 0.82719 0.81054 0.80845 0.82753 0.95538 0.95094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.78 11.39 21.65 0.25 -59.53 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.23 -13.27 10.70 84.03 0.90 -12.37 16 8 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 9 N -0.64 -33.11 3.70 -716.60 -2.65 -35.76 16 10 C 0.12 4.73 8.69 86.49 0.75 5.48 16 11 C 0.12 4.83 4.40 46.75 0.21 5.03 16 12 N -0.70 -21.43 5.32 -450.30 -2.40 -23.82 16 13 C 0.54 18.20 7.77 86.76 0.67 18.87 16 14 O -0.56 -23.60 13.59 -3.91 -0.05 -23.66 16 15 C -0.15 -3.84 5.88 -20.07 -0.12 -3.95 16 16 C -0.07 -1.21 9.54 22.52 0.21 -1.00 16 17 C -0.12 -1.22 10.03 22.23 0.22 -0.99 16 18 C -0.07 -0.74 10.04 22.32 0.22 -0.51 16 19 C -0.13 -2.05 9.82 22.25 0.22 -1.83 16 20 C -0.01 -0.29 6.35 22.60 0.14 -0.15 16 21 Cl -0.06 -1.90 26.02 -2.72 -0.07 -1.97 16 22 C 0.15 7.61 7.33 86.45 0.63 8.25 16 23 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 24 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 25 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 26 H 0.09 4.03 7.50 -2.39 -0.02 4.01 16 27 H 0.41 9.36 6.75 -92.71 -0.63 8.74 16 28 H 0.16 1.81 6.41 -2.91 -0.02 1.79 16 29 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 30 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 31 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.03 1.81 7.17 -2.39 -0.02 1.79 16 Total: -1.00 -77.99 299.47 2.16 -75.83 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.52 Total: 7.24 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 4.54 Total: 13.25 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -4.80 Total: -119.12 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -77.99 2.16 -75.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031293790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.462 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds