Wall clock time and date at job start Tue Mar 31 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 N 1.46501 * 114.57704 * 272.66088 * 11 10 9 13 13 C 1.34779 * 120.00376 * 248.67366 * 12 11 10 14 14 O 1.21554 * 119.99608 * 359.97438 * 13 12 11 15 15 C 1.47784 * 120.00012 * 180.02562 * 13 12 11 16 16 C 1.39620 * 120.12828 * 359.71907 * 15 13 12 17 17 C 1.37902 * 119.85962 * 179.79517 * 16 15 13 18 18 C 1.38508 * 120.13484 * 0.46176 * 17 16 15 19 19 Cl 1.73602 * 119.86918 * 179.76686 * 18 17 16 20 20 C 1.38514 * 120.26138 * 359.79395 * 18 17 16 21 21 C 1.37888 * 120.13841 * 359.97417 * 20 18 17 22 22 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 23 23 H 0.96995 * 120.00365 * 174.90835 * 1 2 3 24 24 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 25 25 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 26 26 H 1.09003 * 114.08984 * 139.78157 * 11 10 9 27 27 H 0.97007 * 119.99881 * 68.67409 * 12 11 10 28 28 H 1.07996 * 120.06871 * 0.02562 * 16 15 13 29 29 H 1.08002 * 119.93066 * 180.21232 * 17 16 15 30 30 H 1.08007 * 119.92979 * 179.97438 * 20 18 17 31 31 H 1.07997 * 120.07389 * 179.97438 * 21 20 18 32 32 H 1.09008 * 113.47329 * 321.86486 * 22 9 7 33 33 H 1.08996 * 113.47155 * 92.25117 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 7 4.6770 -1.8234 2.7592 13 6 5.4947 -1.6189 3.8108 14 8 6.5874 -1.1139 3.6418 15 6 5.0634 -2.0097 5.1692 16 6 3.8070 -2.5856 5.3670 17 6 3.4118 -2.9521 6.6363 18 6 4.2545 -2.7412 7.7150 19 17 3.7476 -3.1996 9.3108 20 6 5.5000 -2.1654 7.5257 21 6 5.9083 -1.7991 6.2606 22 6 4.4217 -2.2228 0.2849 23 1 -0.4850 -0.8367 -0.0745 24 1 4.8718 0.2629 0.0181 25 1 3.9267 0.4295 1.5592 26 1 6.1871 -1.3577 1.3103 27 1 3.8051 -2.2268 2.8940 28 1 3.1475 -2.7472 4.5271 29 1 2.4415 -3.4009 6.7901 30 1 6.1527 -2.0029 8.3707 31 1 6.8794 -1.3498 6.1142 32 1 4.0970 -3.2190 0.5854 33 1 4.9874 -2.2272 -0.6468 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031293986.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:22 Heat of formation + Delta-G solvation = 47.116545 kcal Electronic energy + Delta-G solvation = -18866.741427 eV Core-core repulsion = 15727.471798 eV Total energy + Delta-G solvation = -3139.269629 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35737 -39.01147 -37.79554 -36.65192 -33.69322 -32.32042 -31.29258 -30.95737 -27.87480 -25.36014 -24.35476 -23.10194 -22.33653 -20.60804 -19.58827 -18.19132 -17.52616 -16.77535 -16.14114 -15.33070 -15.24157 -14.97524 -14.61128 -14.05344 -13.89108 -13.77625 -13.55875 -13.28362 -13.15127 -12.40528 -12.12182 -11.83122 -11.69791 -11.43524 -11.12344 -10.97660 -10.57066 -10.22519 -9.91849 -9.81323 -9.37798 -9.29769 -9.05302 -8.80883 -8.57371 -7.26927 -6.36430 -3.30270 0.46963 1.00371 1.78335 2.71183 3.23503 3.40465 3.46252 3.59516 3.63048 4.45799 4.54723 4.56154 4.66961 4.70641 4.96987 5.06435 5.09733 5.29362 5.33626 5.63518 5.78140 5.83128 5.88721 5.89305 6.04475 6.15583 6.19423 6.31847 6.37389 6.40957 6.90773 7.04000 7.70944 8.17119 8.31103 8.90398 9.43784 10.29595 11.13067 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.004207 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.443841 B = 6653.719033 C = 7279.537291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.020 4.020 3 Si 1.060 2.940 4 H -0.294 1.294 5 H -0.281 1.281 6 H -0.295 1.295 7 C -0.309 4.309 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.087 3.913 11 C 0.099 3.901 12 N -0.687 5.687 13 C 0.557 3.443 14 O -0.543 6.543 15 C -0.124 4.124 16 C -0.070 4.070 17 C -0.117 4.117 18 C -0.015 4.015 19 Cl -0.068 7.068 20 C -0.121 4.121 21 C -0.049 4.049 22 C 0.109 3.891 23 H 0.261 0.739 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.407 0.593 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.050 0.950 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.526 -6.854 14.914 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.220 4.220 3 Si 0.892 3.108 4 H -0.222 1.222 5 H -0.208 1.208 6 H -0.222 1.222 7 C -0.435 4.435 8 H 0.100 0.900 9 N -0.353 5.353 10 C -0.040 4.040 11 C -0.008 4.008 12 N -0.337 5.337 13 C 0.344 3.656 14 O -0.422 6.422 15 C -0.128 4.128 16 C -0.089 4.089 17 C -0.135 4.135 18 C -0.042 4.042 19 Cl -0.039 7.039 20 C -0.139 4.139 21 C -0.068 4.068 22 C -0.018 4.018 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.243 0.757 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.068 0.932 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.776 -4.904 14.896 19.028 hybrid contribution -0.467 -1.834 -0.087 1.894 sum 10.309 -6.738 14.809 19.261 Atomic orbital electron populations 1.70911 1.05449 1.29590 1.51192 1.25747 0.96445 1.00870 0.98904 0.83794 0.74571 0.75916 0.76525 1.22151 1.20776 1.22243 1.20133 0.80324 0.95937 1.47139 0.90011 1.46405 1.03535 1.07913 1.77410 1.23199 0.90481 0.94016 0.96258 1.22484 0.98490 0.98234 0.81558 1.45433 1.20026 1.61899 1.06331 1.18136 0.84580 0.78629 0.84239 1.90749 1.21568 1.44242 1.85597 1.20151 0.95662 1.02760 0.94191 1.21424 0.94971 0.95229 0.97318 1.21030 1.00191 1.01229 0.91072 1.21192 0.95617 1.00895 0.86471 1.98382 1.91030 1.90897 1.23620 1.21036 0.94991 0.99864 0.98055 1.21244 0.99737 0.95499 0.90307 1.22750 0.89534 0.94718 0.94811 0.92830 0.92597 0.92659 0.87700 0.75686 0.84170 0.84162 0.84279 0.83604 0.93223 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.70 55.49 0.76 -27.86 16 2 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16 3 Si 1.06 26.39 25.50 -169.99 -4.34 22.05 16 4 H -0.29 -7.13 6.97 56.52 0.39 -6.74 16 5 H -0.28 -6.51 5.66 56.52 0.32 -6.19 16 6 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.31 -8.50 11.03 -15.06 -0.17 -8.67 16 8 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 9 N -0.62 -14.47 3.62 -184.65 -0.67 -15.14 16 10 C 0.09 1.81 5.44 -8.39 -0.05 1.76 16 11 C 0.10 1.71 4.61 -67.68 -0.31 1.39 16 12 N -0.69 -10.95 5.35 -54.45 -0.29 -11.24 16 13 C 0.56 8.73 7.77 -12.36 -0.10 8.64 16 14 O -0.54 -9.87 15.94 5.32 0.08 -9.79 16 15 C -0.12 -1.60 5.87 -104.96 -0.62 -2.22 16 16 C -0.07 -0.80 9.54 -39.19 -0.37 -1.17 16 17 C -0.12 -1.19 9.81 -39.61 -0.39 -1.58 16 18 C -0.01 -0.15 6.33 -39.38 -0.25 -0.40 16 19 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 20 C -0.12 -1.17 9.81 -39.61 -0.39 -1.56 16 21 C -0.05 -0.55 9.59 -39.20 -0.38 -0.93 16 22 C 0.11 1.99 8.44 -8.52 -0.07 1.92 16 23 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 24 H 0.06 1.13 7.02 -51.93 -0.36 0.77 16 25 H 0.06 1.22 6.22 -51.93 -0.32 0.90 16 26 H 0.11 1.70 7.45 -51.93 -0.39 1.31 16 27 H 0.41 6.14 6.79 -40.82 -0.28 5.87 16 28 H 0.14 1.47 6.40 -52.49 -0.34 1.14 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.15 1.58 7.65 -52.49 -0.40 1.17 16 32 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -32.08 297.28 -8.10 -40.18 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.45 Total: 2.93 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.18 Total: -3.49 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.20 Total: -54.24 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -4.34 Total: 22.05 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.08 -8.10 -40.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031293986.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.298 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds