Wall clock time and date at job start Tue Mar 31 2020 01:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46605 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47103 * 299.99953 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.00218 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.39596 * 120.13903 * 359.72101 * 15 13 12 17 17 C 1.37947 * 119.88545 * 179.76924 * 16 15 13 18 18 C 1.38359 * 120.15420 * 0.50885 * 17 16 15 19 19 C 1.38452 * 120.28060 * 359.74642 * 18 17 16 20 20 Cl 1.73599 * 119.94217 * 180.02562 * 19 18 17 21 21 C 1.38102 * 120.11662 * 359.97438 * 19 18 17 22 22 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 23 23 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 24 24 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 25 25 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 26 26 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 27 27 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 28 28 H 1.08006 * 120.05489 * 0.02562 * 16 15 13 29 29 H 1.07998 * 119.92039 * 180.23394 * 17 16 15 30 30 H 1.07995 * 119.85994 * 179.76169 * 18 17 16 31 31 H 1.08001 * 120.07504 * 180.02562 * 21 19 18 32 32 H 1.08999 * 113.77157 * 90.38334 * 22 9 7 33 33 H 1.09002 * 113.84143 * 318.91597 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5741 -4.6862 4.2755 16 6 0.4295 -3.9926 4.9541 17 6 0.4368 -3.9691 6.3333 18 6 -0.5420 -4.6398 7.0451 19 6 -1.5374 -5.3342 6.3789 20 17 -2.7615 -6.1721 7.2807 21 6 -1.5590 -5.3606 4.9983 22 6 -0.1058 -2.7570 0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 2.5619 -4.0327 0.6538 25 1 1.8325 -4.2346 -0.9996 26 1 -0.1594 -4.9598 0.2327 27 1 1.0580 -3.5720 2.5714 28 1 1.1966 -3.4719 4.4000 29 1 1.2108 -3.4295 6.8588 30 1 -0.5295 -4.6214 8.1248 31 1 -2.3360 -5.9021 4.4794 32 1 -0.5312 -2.8713 -0.9969 33 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031296551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:11 Heat of formation + Delta-G solvation = 41.372069 kcal Electronic energy + Delta-G solvation = -18835.519952 eV Core-core repulsion = 15696.001224 eV Total energy + Delta-G solvation = -3139.518728 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18181 -38.71260 -37.38148 -36.56387 -33.47105 -32.04565 -31.24031 -30.68978 -27.56300 -24.86953 -24.46558 -22.98597 -22.59019 -20.52390 -19.36428 -18.03297 -16.85107 -16.32871 -15.84681 -15.25074 -15.08208 -14.96548 -14.55245 -13.95006 -13.80133 -13.73051 -13.43187 -12.75940 -12.60922 -12.10730 -11.77446 -11.66801 -11.55949 -11.27418 -11.14112 -10.92638 -10.58198 -10.31491 -9.87302 -9.74932 -9.54623 -9.24218 -8.97553 -8.89450 -8.45080 -6.95443 -5.81101 -3.15287 0.64210 1.00191 1.89160 2.86922 3.34348 3.39924 3.42893 3.43768 3.74944 4.39943 4.59948 4.61488 4.89689 4.93471 5.07031 5.14517 5.36558 5.43742 5.52404 5.63223 5.93428 6.03607 6.08314 6.09624 6.19280 6.34394 6.46056 6.48819 6.75359 7.17766 7.28395 7.55413 7.88158 7.94078 8.50187 8.98663 9.65489 10.52905 11.35112 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.003963 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.551491 B = 7064.506915 C = 7657.664528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.611 5.611 10 C 0.111 3.889 11 C 0.089 3.911 12 N -0.684 5.684 13 C 0.556 3.444 14 O -0.543 6.543 15 C -0.112 4.112 16 C -0.079 4.079 17 C -0.113 4.113 18 C -0.092 4.092 19 C -0.045 4.045 20 Cl -0.069 7.069 21 C -0.054 4.054 22 C 0.151 3.849 23 H 0.254 0.746 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.403 0.597 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.147 0.853 32 H 0.037 0.963 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -10.545 13.862 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.017 4.017 12 N -0.333 5.333 13 C 0.342 3.658 14 O -0.422 6.422 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.132 4.132 18 C -0.110 4.110 19 C -0.072 4.072 20 Cl -0.040 7.040 21 C -0.074 4.074 22 C 0.024 3.976 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.239 0.761 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.164 0.836 32 H 0.055 0.945 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.614 -10.694 13.488 17.224 hybrid contribution 0.688 1.277 0.109 1.454 sum 0.074 -9.417 13.596 16.540 Atomic orbital electron populations 1.69837 1.05019 1.25299 1.56239 1.24788 0.95610 0.97507 1.02310 0.86084 0.78718 0.83833 0.77317 1.20470 1.21728 1.21718 1.19052 0.90245 0.81973 1.44253 0.90209 1.46180 1.02234 0.99145 1.86339 1.22919 0.94319 0.86943 0.97392 1.22919 0.99241 1.00425 0.79136 1.45440 1.29235 1.51443 1.07174 1.18055 0.81985 0.79398 0.86344 1.90753 1.36499 1.44164 1.70777 1.20007 0.96968 1.00806 0.93768 1.21562 0.97203 0.96214 0.94829 1.21091 0.98833 0.99451 0.93787 1.21235 0.93212 0.95891 1.00709 1.20796 0.93734 1.00590 0.92067 1.98373 1.54095 1.76897 1.74645 1.21149 0.97985 0.96803 0.91441 1.22749 0.88225 0.89317 0.97270 0.93626 0.93448 0.93440 0.89052 0.76072 0.84507 0.84336 0.84635 0.83566 0.94528 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 11.39 55.49 0.63 -26.13 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.12 10.70 -15.06 -0.16 -6.28 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -14.90 3.70 -177.88 -0.66 -15.56 16 10 C 0.11 2.12 8.68 -2.96 -0.03 2.10 16 11 C 0.09 1.68 4.40 -70.15 -0.31 1.37 16 12 N -0.68 -11.71 5.32 -56.29 -0.30 -12.01 16 13 C 0.56 9.53 7.77 -12.33 -0.10 9.43 16 14 O -0.54 -10.89 15.97 5.32 0.08 -10.81 16 15 C -0.11 -1.57 5.87 -104.97 -0.62 -2.19 16 16 C -0.08 -0.92 9.54 -39.18 -0.37 -1.29 16 17 C -0.11 -1.08 10.03 -39.64 -0.40 -1.48 16 18 C -0.09 -0.88 9.82 -39.46 -0.39 -1.27 16 19 C -0.05 -0.51 6.31 -39.55 -0.25 -0.76 16 20 Cl -0.07 -0.72 28.95 -51.86 -1.50 -2.22 16 21 C -0.05 -0.71 9.37 -39.15 -0.37 -1.08 16 22 C 0.15 3.53 7.32 -2.85 -0.02 3.51 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.68 7.51 -51.93 -0.39 1.29 16 27 H 0.40 6.38 6.77 -40.82 -0.28 6.10 16 28 H 0.14 1.44 6.40 -52.48 -0.34 1.11 16 29 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.98 7.65 -52.49 -0.40 1.58 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 2.05 7.16 -51.93 -0.37 1.68 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -31.48 303.72 -8.73 -40.21 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.44 Total: 3.59 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -3.10 Total: 1.83 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.33 Total: -53.71 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.48 -8.73 -40.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031296551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.580 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds