Wall clock time and date at job start Tue Mar 31 2020 01:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46605 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47103 * 299.99953 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.00218 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.39596 * 120.13903 * 359.72101 * 15 13 12 17 17 C 1.37947 * 119.88545 * 179.76924 * 16 15 13 18 18 C 1.38359 * 120.15420 * 0.50885 * 17 16 15 19 19 C 1.38452 * 120.28060 * 359.74642 * 18 17 16 20 20 Cl 1.73599 * 119.94217 * 180.02562 * 19 18 17 21 21 C 1.38102 * 120.11662 * 359.97438 * 19 18 17 22 22 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 23 23 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 24 24 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 25 25 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 26 26 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 27 27 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 28 28 H 1.08006 * 120.05489 * 0.02562 * 16 15 13 29 29 H 1.07998 * 119.92039 * 180.23394 * 17 16 15 30 30 H 1.07995 * 119.85994 * 179.76169 * 18 17 16 31 31 H 1.08001 * 120.07504 * 180.02562 * 21 19 18 32 32 H 1.08999 * 113.77157 * 90.38334 * 22 9 7 33 33 H 1.09002 * 113.84143 * 318.91597 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5741 -4.6862 4.2755 16 6 0.4295 -3.9926 4.9541 17 6 0.4368 -3.9691 6.3333 18 6 -0.5420 -4.6398 7.0451 19 6 -1.5374 -5.3342 6.3789 20 17 -2.7615 -6.1721 7.2807 21 6 -1.5590 -5.3606 4.9983 22 6 -0.1058 -2.7570 0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 2.5619 -4.0327 0.6538 25 1 1.8325 -4.2346 -0.9996 26 1 -0.1594 -4.9598 0.2327 27 1 1.0580 -3.5720 2.5714 28 1 1.1966 -3.4719 4.4000 29 1 1.2108 -3.4295 6.8588 30 1 -0.5295 -4.6214 8.1248 31 1 -2.3360 -5.9021 4.4794 32 1 -0.5312 -2.8713 -0.9969 33 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031296551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:10 Heat of formation + Delta-G solvation = 21.409330 kcal Electronic energy + Delta-G solvation = -18836.385602 eV Core-core repulsion = 15696.001224 eV Total energy + Delta-G solvation = -3140.384377 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42436 -39.96467 -38.86369 -37.43696 -35.06866 -33.84694 -32.22411 -31.69608 -29.43789 -26.59957 -25.81327 -24.46457 -23.60166 -21.79236 -20.98713 -19.18116 -18.74721 -17.51561 -17.00038 -16.84798 -16.37209 -16.15229 -15.96052 -15.57732 -15.12131 -14.77492 -14.58814 -14.37430 -14.23922 -13.38490 -13.20081 -12.95105 -12.82686 -12.55664 -12.51913 -12.33501 -12.11993 -12.00065 -11.70982 -11.38776 -11.16427 -10.88435 -10.22165 -9.96441 -9.81117 -8.93683 -7.87989 -5.22925 -0.31497 0.12076 1.03121 1.47577 1.48824 1.58744 1.73060 2.12222 2.48238 2.69776 3.27478 3.41671 3.56634 3.78210 3.86096 3.98869 4.05891 4.27643 4.42591 4.48534 4.60572 4.79758 4.80023 4.88059 5.05149 5.11225 5.16812 5.24399 5.26568 5.49789 5.62675 5.70966 5.91880 6.53875 6.91340 7.14952 7.62475 8.55782 9.28422 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.003963 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.551491 B = 7064.506915 C = 7657.664528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.091 0.909 9 N -0.634 5.634 10 C 0.120 3.880 11 C 0.110 3.890 12 N -0.681 5.681 13 C 0.555 3.445 14 O -0.580 6.580 15 C -0.135 4.135 16 C -0.080 4.080 17 C -0.103 4.103 18 C -0.078 4.078 19 C -0.052 4.052 20 Cl -0.063 7.063 21 C -0.067 4.067 22 C 0.144 3.856 23 H 0.246 0.754 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.410 0.590 28 H 0.146 0.854 29 H 0.175 0.825 30 H 0.167 0.833 31 H 0.132 0.868 32 H 0.024 0.976 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -10.763 15.884 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.357 4.357 8 H 0.108 0.892 9 N -0.362 5.362 10 C -0.005 4.005 11 C 0.004 3.996 12 N -0.330 5.330 13 C 0.344 3.656 14 O -0.462 6.462 15 C -0.138 4.138 16 C -0.099 4.099 17 C -0.121 4.121 18 C -0.097 4.097 19 C -0.078 4.078 20 Cl -0.034 7.034 21 C -0.087 4.087 22 C 0.018 3.982 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.248 0.752 28 H 0.163 0.837 29 H 0.193 0.807 30 H 0.185 0.815 31 H 0.150 0.850 32 H 0.041 0.959 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.520 -10.944 15.527 19.057 hybrid contribution 0.026 1.274 -0.457 1.354 sum 1.546 -9.670 15.069 17.972 Atomic orbital electron populations 1.70046 1.06642 1.25360 1.58346 1.25601 0.96339 1.00854 1.03112 0.85038 0.78421 0.79590 0.76429 1.18507 1.22674 1.22020 1.19485 0.90942 0.83028 1.42277 0.89174 1.46449 1.02733 1.00639 1.86329 1.23064 0.94989 0.83687 0.98729 1.22574 0.98834 0.98024 0.80187 1.45376 1.29637 1.51643 1.06382 1.18574 0.80967 0.78273 0.87817 1.90722 1.37797 1.45747 1.71906 1.19781 0.98974 1.03354 0.91702 1.21735 0.96515 0.95582 0.96028 1.21495 0.99222 0.98602 0.92802 1.21653 0.91807 0.93939 1.02300 1.20892 0.94506 1.01014 0.91417 1.98376 1.54002 1.76837 1.74174 1.21092 0.97827 0.97297 0.92497 1.22659 0.87790 0.91415 0.96372 0.94527 0.90870 0.91587 0.88226 0.75211 0.83655 0.80735 0.81528 0.85033 0.95864 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 11.39 21.65 0.25 -57.01 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.98 44.38 29.55 68.60 2.03 46.40 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 7 C -0.23 -12.15 10.70 84.03 0.90 -11.25 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.63 -30.68 3.70 -716.70 -2.65 -33.34 16 10 C 0.12 4.39 8.68 86.49 0.75 5.15 16 11 C 0.11 4.16 4.40 46.74 0.21 4.36 16 12 N -0.68 -23.14 5.32 -450.29 -2.40 -25.54 16 13 C 0.56 19.27 7.77 86.79 0.67 19.95 16 14 O -0.58 -24.02 15.97 -3.88 -0.06 -24.08 16 15 C -0.13 -3.73 5.87 -20.09 -0.12 -3.85 16 16 C -0.08 -1.68 9.54 22.53 0.21 -1.47 16 17 C -0.10 -1.58 10.03 22.23 0.22 -1.36 16 18 C -0.08 -1.24 9.82 22.35 0.22 -1.02 16 19 C -0.05 -1.08 6.31 22.29 0.14 -0.94 16 20 Cl -0.06 -1.22 28.95 -2.72 -0.08 -1.30 16 21 C -0.07 -1.77 9.37 22.55 0.21 -1.56 16 22 C 0.14 6.96 7.32 86.44 0.63 7.59 16 23 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.10 3.63 7.51 -2.39 -0.02 3.62 16 27 H 0.41 12.59 6.77 -92.70 -0.63 11.96 16 28 H 0.15 2.75 6.40 -2.91 -0.02 2.73 16 29 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.13 3.74 7.65 -2.91 -0.02 3.72 16 32 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 2.24 7.16 -2.39 -0.02 2.22 16 Total: -1.00 -69.52 303.72 2.12 -67.40 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.52 Total: 15.06 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 4.52 Total: 12.41 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -4.80 Total: -115.89 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.08 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -69.52 2.12 -67.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031296551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.806 kcal (2) G-P(sol) polarization free energy of solvation -69.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds