Wall clock time and date at job start Tue Mar 31 2020 01:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99767 * 2 1 4 4 H 1.48503 * 109.46621 * 239.99787 * 3 2 1 5 5 H 1.48491 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46890 * 120.00572 * 3 2 1 7 7 C 1.38804 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00004 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.47861 * 126.94149 * 359.97438 * 9 7 2 11 11 C 1.56020 * 105.10328 * 182.01939 * 10 9 7 12 12 H 1.09000 * 116.24764 * 159.68470 * 11 10 9 13 13 C 1.57082 * 100.41659 * 33.05148 * 11 10 9 14 14 C 1.49288 * 126.94543 * 179.97438 * 9 7 2 15 15 H 1.09004 * 116.15334 * 16.68748 * 14 9 7 16 16 C 1.55969 * 104.83226 * 246.40940 * 14 9 7 17 17 N 1.47872 * 105.12844 * 289.90423 * 16 14 9 18 18 C 1.34772 * 126.94609 * 180.98550 * 17 16 14 19 19 O 1.21566 * 120.00198 * 179.68216 * 18 17 16 20 20 C 1.47757 * 120.00099 * 359.69297 * 18 17 16 21 21 C 1.39345 * 124.11655 * 179.97438 * 20 18 17 22 22 N 1.30096 * 112.14421 * 179.97438 * 21 20 18 23 23 S 1.55921 * 108.75416 * 0.02562 * 22 21 20 24 24 N 1.31492 * 124.11101 * 359.69068 * 20 18 17 25 25 H 0.97006 * 119.99723 * 0.02562 * 1 2 3 26 26 H 1.09008 * 110.31490 * 63.11396 * 10 9 7 27 27 H 1.09001 * 110.40611 * 300.96932 * 10 9 7 28 28 H 1.08995 * 112.36689 * 64.06434 * 13 11 10 29 29 H 1.09000 * 112.36807 * 191.50618 * 13 11 10 30 30 H 1.09002 * 111.37938 * 170.42851 * 16 14 9 31 31 H 1.08997 * 109.22344 * 48.27082 * 16 14 9 32 32 H 1.07997 * 123.92737 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1422 -2.5668 0.0028 11 6 -0.3638 -4.1102 0.0568 12 1 -1.3409 -4.4451 0.4048 13 6 0.8747 -4.5450 0.9196 14 6 1.9102 -3.7617 0.0018 15 1 2.9609 -3.8366 0.2819 16 6 1.5103 -4.3660 -1.3794 17 7 0.0501 -4.5843 -1.2969 18 6 -0.7455 -5.1102 -2.2492 19 8 -1.9367 -5.2382 -2.0436 20 6 -0.1697 -5.5314 -3.5432 21 6 -0.9109 -6.0845 -4.5854 22 7 -0.1704 -6.3695 -5.6164 23 16 1.3049 -5.9788 -5.2973 24 7 1.1037 -5.4248 -3.8533 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5745 -2.1540 -0.9088 27 1 -0.5824 -2.0905 0.8789 28 1 0.8373 -4.1417 1.9316 29 1 1.0252 -5.6245 0.9150 30 1 2.0241 -5.3094 -1.5641 31 1 1.7416 -3.6478 -2.1659 32 1 -1.9763 -6.2559 -4.5426 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032289182.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:02 Heat of formation + Delta-G solvation = 94.118593 kcal Electronic energy + Delta-G solvation = -19903.298764 eV Core-core repulsion = 16800.403754 eV Total energy + Delta-G solvation = -3102.895010 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07048 -39.67910 -37.62393 -33.99660 -33.32218 -31.42489 -29.13884 -28.56969 -27.27509 -25.21500 -23.94759 -22.58412 -20.52589 -19.92995 -19.31445 -18.67836 -17.41644 -16.33129 -16.09431 -15.86958 -15.32128 -14.82469 -14.39662 -13.97429 -13.38647 -13.14756 -12.47430 -12.09870 -11.98669 -11.69331 -11.44683 -11.29287 -11.17172 -11.09084 -11.03342 -10.85996 -10.66886 -10.59665 -10.24419 -10.10084 -9.81197 -9.64717 -9.21790 -8.72380 -8.07444 -6.94622 -5.78791 -3.13136 0.44978 1.38887 1.60062 1.61589 3.20362 3.36586 3.38206 3.40832 3.42790 4.40716 4.45449 4.75008 5.06968 5.16359 5.20343 5.33537 5.43386 5.54763 5.60797 5.72381 6.03650 6.19985 6.25756 6.34857 6.41627 6.53200 6.58165 6.72109 7.39279 7.44299 7.68809 7.92540 8.08046 8.34963 9.08318 9.69196 10.38067 11.33520 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022024 B = 0.005431 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.035268 B = 5154.107820 C = 5608.844666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.595 5.595 10 C 0.175 3.825 11 C 0.099 3.901 12 H 0.116 0.884 13 C -0.154 4.154 14 C 0.139 3.861 15 H 0.107 0.893 16 C 0.096 3.904 17 N -0.583 5.583 18 C 0.610 3.390 19 O -0.541 6.541 20 C 0.025 3.975 21 C 0.087 3.913 22 N -0.581 5.581 23 S 0.690 5.310 24 N -0.530 5.530 25 H 0.255 0.745 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -12.876 -6.097 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.319 5.319 10 C 0.050 3.950 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.194 4.194 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.029 4.029 17 N -0.314 5.314 18 C 0.393 3.607 19 O -0.420 6.420 20 C -0.151 4.151 21 C -0.107 4.107 22 N -0.421 5.421 23 S 0.732 5.268 24 N -0.379 5.379 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.982 -12.828 -7.261 15.269 hybrid contribution -1.113 1.117 0.763 1.751 sum 2.869 -11.711 -6.499 13.697 Atomic orbital electron populations 1.69900 1.04955 1.25483 1.56361 1.24821 0.95698 0.97740 1.01993 0.86182 0.78440 0.83106 0.77895 1.21193 1.21605 1.21051 1.18999 0.90393 0.82009 1.44517 0.90160 1.45177 1.01314 0.99317 1.86112 1.21935 0.84852 0.86776 1.01482 1.24478 0.98179 0.97836 0.79832 0.86609 1.24502 0.96796 0.98915 0.99194 1.23527 0.96461 0.86005 0.91019 0.87517 1.23313 0.78689 0.99559 1.01321 1.49035 1.09933 1.57668 1.14766 1.16324 0.85102 0.78480 0.80841 1.90791 1.14039 1.57690 1.79432 1.22648 0.87564 1.04996 0.99855 1.23763 1.03360 0.97423 0.86200 1.72248 1.10707 1.26599 1.32590 1.79041 1.08741 1.37385 1.01595 1.72785 1.22422 1.22220 1.20465 0.93492 0.93400 0.92306 0.89674 0.91373 0.92018 0.90722 0.77082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.56 55.49 0.59 -26.10 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.13 10.37 -15.06 -0.16 -6.28 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.25 3.05 -155.16 -0.47 -14.73 16 10 C 0.17 4.15 4.79 -1.68 -0.01 4.14 16 11 C 0.10 1.88 5.18 -62.56 -0.32 1.56 16 12 H 0.12 2.09 8.05 -51.93 -0.42 1.67 16 13 C -0.15 -2.56 6.94 -21.18 -0.15 -2.71 16 14 C 0.14 2.59 5.55 -61.46 -0.34 2.25 16 15 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 16 C 0.10 1.72 4.92 -1.70 -0.01 1.71 16 17 N -0.58 -10.94 2.94 -157.95 -0.46 -11.40 16 18 C 0.61 11.30 7.90 -12.37 -0.10 11.20 16 19 O -0.54 -10.96 17.15 5.31 0.09 -10.87 16 20 C 0.02 0.39 6.72 -83.71 -0.56 -0.17 16 21 C 0.09 1.17 11.22 -17.88 -0.20 0.97 16 22 N -0.58 -7.39 11.41 19.43 0.22 -7.17 16 23 S 0.69 7.63 23.69 -107.50 -2.55 5.08 16 24 N -0.53 -7.72 8.90 23.17 0.21 -7.51 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.05 1.32 7.68 -51.92 -0.40 0.92 16 27 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.97 7.66 -51.93 -0.40 0.57 16 31 H 0.07 1.51 7.84 -51.93 -0.41 1.11 16 32 H 0.21 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -31.34 284.98 -8.30 -39.64 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.25 Total: -0.24 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -1.94 Total: 12.40 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 0.08 Total: -66.91 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 7.63 SS G_CDS: -2.55 Total: 5.08 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.34 -8.30 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032289182.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.757 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds