Wall clock time and date at job start Tue Mar 31 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00086 * 2 1 4 4 H 1.48494 * 109.47040 * 274.98199 * 3 2 1 5 5 H 1.48501 * 109.46972 * 34.98525 * 3 2 1 6 6 H 1.48502 * 109.46751 * 154.98149 * 3 2 1 7 7 C 1.38811 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00426 * 186.44199 * 7 2 1 9 9 N 1.36941 * 119.99799 * 6.43407 * 7 2 1 10 10 C 1.47874 * 126.94424 * 353.68357 * 9 7 2 11 11 C 1.56017 * 105.10084 * 182.00116 * 10 9 7 12 12 H 1.09005 * 116.24107 * 159.68493 * 11 10 9 13 13 C 1.57081 * 99.61051 * 32.80997 * 11 10 9 14 14 C 1.49286 * 126.94317 * 173.68744 * 9 7 2 15 15 H 1.09000 * 116.78794 * 16.30839 * 14 9 7 16 16 C 1.56019 * 104.09137 * 246.69492 * 14 9 7 17 17 N 1.47866 * 105.10578 * 288.76976 * 16 14 9 18 18 C 1.34782 * 126.94642 * 182.02254 * 17 16 14 19 19 O 1.21614 * 120.00288 * 179.97438 * 18 17 16 20 20 C 1.47173 * 119.99765 * 359.97024 * 18 17 16 21 21 C 1.38243 * 128.47777 * 180.02562 * 20 18 17 22 22 N 1.31236 * 111.89180 * 180.02562 * 21 20 18 23 23 N 1.27335 * 120.04018 * 359.97438 * 22 21 20 24 24 S 1.56639 * 109.73899 * 359.69921 * 23 22 21 25 25 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 26 26 H 1.08994 * 110.30986 * 63.09298 * 10 9 7 27 27 H 1.08999 * 110.31597 * 300.91098 * 10 9 7 28 28 H 1.09006 * 112.36913 * 64.26848 * 13 11 10 29 29 H 1.08993 * 112.37269 * 191.71315 * 13 11 10 30 30 H 1.09002 * 110.31980 * 169.86081 * 16 14 9 31 31 H 1.08999 * 110.39849 * 47.71881 * 16 14 9 32 32 H 1.08006 * 124.05386 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0851 -1.2052 0.1044 9 7 1.3320 -2.3843 -0.1340 10 6 -0.1349 -2.5696 -0.1569 11 6 -0.3481 -4.1105 -0.2769 12 1 -1.3242 -4.4872 0.0288 13 6 0.9006 -4.6119 0.5335 14 6 1.9241 -3.7463 -0.2856 15 1 2.9758 -3.8569 -0.0214 16 6 1.5273 -4.1740 -1.7326 17 7 0.0718 -4.4279 -1.6739 18 6 -0.7165 -4.8591 -2.6785 19 8 -1.9060 -5.0269 -2.4890 20 6 -0.1378 -5.1269 -4.0049 21 6 -0.7762 -5.5691 -5.1486 22 7 0.0566 -5.6995 -6.1544 23 7 1.2907 -5.4265 -5.9998 24 16 1.5476 -4.9536 -4.5288 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5673 -2.0595 -1.0176 27 1 -0.5780 -2.1970 0.7667 28 1 0.8580 -4.3209 1.5832 29 1 1.0716 -5.6815 0.4124 30 1 2.0586 -5.0821 -2.0179 31 1 1.7434 -3.3722 -2.4385 32 1 -1.8333 -5.7824 -5.2071 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032297768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:45 Heat of formation + Delta-G solvation = 84.978637 kcal Electronic energy + Delta-G solvation = -19844.636262 eV Core-core repulsion = 16741.344914 eV Total energy + Delta-G solvation = -3103.291348 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94012 -41.55593 -39.36822 -35.53122 -33.73998 -32.86339 -30.81796 -30.33339 -28.55875 -27.00081 -25.47390 -24.13023 -21.87125 -21.54473 -20.55994 -20.03933 -18.88338 -17.96715 -17.60149 -17.15976 -16.75455 -16.12612 -15.88365 -15.64175 -15.11968 -14.82612 -13.99315 -13.85674 -13.59088 -13.40532 -13.17618 -13.02419 -12.82814 -12.73839 -12.41199 -12.17638 -12.05884 -11.91412 -11.58014 -11.39988 -11.18669 -11.11119 -10.88569 -10.72576 -9.69883 -8.90296 -7.85439 -5.19582 -1.35837 -0.24340 0.43219 0.86618 1.48702 1.49742 1.58219 1.66337 1.87627 2.49218 2.91770 3.27744 3.34135 3.47569 3.63858 3.76585 3.82043 4.00931 4.20883 4.44368 4.54592 4.60082 4.71807 4.86447 5.03612 5.13493 5.23391 5.45111 5.52783 5.68234 6.10796 6.37715 6.55378 6.83386 7.03932 7.72084 8.41534 9.26357 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.005785 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.939235 B = 4838.719797 C = 5301.327076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.295 1.295 5 H -0.304 1.304 6 H -0.259 1.259 7 C -0.227 4.227 8 H 0.099 0.901 9 N -0.615 5.615 10 C 0.182 3.818 11 C 0.106 3.894 12 H 0.124 0.876 13 C -0.129 4.129 14 C 0.142 3.858 15 H 0.145 0.855 16 C 0.068 3.932 17 N -0.599 5.599 18 C 0.610 3.390 19 O -0.566 6.566 20 C -0.300 4.300 21 C 0.074 3.926 22 N -0.273 5.273 23 N -0.298 5.298 24 S 0.505 5.495 25 H 0.243 0.757 26 H 0.003 0.997 27 H 0.020 0.980 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.508 -12.819 -3.615 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.222 1.222 5 H -0.231 1.231 6 H -0.183 1.183 7 C -0.356 4.356 8 H 0.117 0.883 9 N -0.340 5.340 10 C 0.056 3.944 11 C 0.004 3.996 12 H 0.142 0.858 13 C -0.168 4.168 14 C 0.035 3.965 15 H 0.163 0.837 16 C -0.057 4.057 17 N -0.331 5.331 18 C 0.397 3.603 19 O -0.447 6.447 20 C -0.440 4.440 21 C -0.094 4.094 22 N -0.136 5.136 23 N -0.279 5.279 24 S 0.641 5.359 25 H 0.053 0.947 26 H 0.021 0.979 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.528 -12.646 -4.616 14.962 hybrid contribution -1.734 1.460 0.354 2.294 sum 4.794 -11.186 -4.262 12.895 Atomic orbital electron populations 1.70141 1.06582 1.25138 1.58541 1.25617 0.96284 1.01022 1.03156 0.85169 0.78285 0.79769 0.76814 1.22237 1.23148 1.18326 1.19537 0.91903 0.83027 1.41101 0.88333 1.45500 1.01416 1.02196 1.84839 1.21603 0.85125 0.90087 0.97605 1.24328 1.00087 0.95641 0.79587 0.85830 1.24122 0.93184 1.00421 0.99074 1.23587 0.98841 0.83554 0.90468 0.83730 1.23604 0.78977 1.01005 1.02141 1.49143 1.10463 1.62634 1.10907 1.16272 0.84985 0.77465 0.81589 1.90789 1.15461 1.55702 1.82709 1.27922 1.00924 1.14626 1.00569 1.24719 1.03470 0.96196 0.85007 1.70803 0.95777 1.17934 1.29113 1.78524 1.13054 1.18434 1.17856 1.82661 1.06675 1.43754 1.02817 0.94743 0.97914 0.96169 0.89384 0.87449 0.87761 0.91659 0.75288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.92 10.61 21.65 0.23 -55.69 16 2 C -0.07 -3.63 5.49 84.86 0.47 -3.17 16 3 Si 0.97 43.46 29.56 68.60 2.03 45.49 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.23 -11.19 10.36 84.03 0.87 -10.32 16 8 H 0.10 4.45 7.84 -2.91 -0.02 4.42 16 9 N -0.62 -26.90 3.02 -648.53 -1.96 -28.86 16 10 C 0.18 8.34 4.77 87.16 0.42 8.76 16 11 C 0.11 3.62 5.24 46.93 0.25 3.87 16 12 H 0.12 4.11 8.05 -2.38 -0.02 4.09 16 13 C -0.13 -3.40 6.81 33.47 0.23 -3.18 16 14 C 0.14 4.22 5.53 46.93 0.26 4.48 16 15 H 0.15 3.38 8.14 -2.39 -0.02 3.36 16 16 C 0.07 1.85 4.66 87.16 0.41 2.26 16 17 N -0.60 -19.30 2.95 -772.45 -2.28 -21.58 16 18 C 0.61 20.39 7.88 86.59 0.68 21.07 16 19 O -0.57 -22.25 17.32 -4.07 -0.07 -22.32 16 20 C -0.30 -8.24 6.69 24.62 0.16 -8.08 16 21 C 0.07 1.88 11.55 84.78 0.98 2.86 16 22 N -0.27 -7.49 11.54 -57.87 -0.67 -8.16 16 23 N -0.30 -7.90 12.51 37.02 0.46 -7.43 16 24 S 0.51 11.36 19.88 -56.49 -1.12 10.23 16 25 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.00 0.15 7.53 -2.39 -0.02 0.13 16 27 H 0.02 1.05 7.64 -2.39 -0.02 1.03 16 28 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 1.95 7.11 -2.39 -0.02 1.93 16 31 H 0.07 2.00 7.36 -2.39 -0.02 1.99 16 32 H 0.23 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -68.63 284.01 2.50 -66.13 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.16 Total: 3.63 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 4.72 Total: 18.55 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -4.21 Total: -121.72 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 11.36 SS G_CDS: -1.12 Total: 10.23 kcal Total: -68.63 2.50 -66.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032297768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.112 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds