Wall clock time and date at job start Tue Mar 31 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00192 * 2 1 4 4 H 1.48499 * 109.47113 * 240.00119 * 3 2 1 5 5 H 1.48501 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46802 * 120.00029 * 3 2 1 7 7 C 1.38812 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00173 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.47865 * 126.94567 * 359.96669 * 9 7 2 11 11 C 1.56023 * 105.10604 * 182.02721 * 10 9 7 12 12 H 1.09001 * 116.24911 * 159.68595 * 11 10 9 13 13 C 1.57077 * 100.41472 * 33.05408 * 11 10 9 14 14 C 1.49294 * 126.94411 * 180.02562 * 9 7 2 15 15 H 1.09000 * 116.15205 * 16.67367 * 14 9 7 16 16 C 1.55961 * 105.03449 * 246.32217 * 14 9 7 17 17 N 1.47872 * 105.12951 * 290.22383 * 16 14 9 18 18 C 1.34783 * 126.94186 * 180.63435 * 17 16 14 19 19 O 1.21606 * 119.99615 * 179.67778 * 18 17 16 20 20 C 1.47447 * 120.00199 * 359.68336 * 18 17 16 21 21 C 1.37980 * 124.15770 * 179.97438 * 20 18 17 22 22 S 1.72096 * 104.03411 * 180.02562 * 21 20 18 23 23 N 1.56407 * 96.15569 * 359.97438 * 22 21 20 24 24 N 1.27408 * 109.87501 * 0.02562 * 23 22 21 25 25 H 0.97000 * 119.99641 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.31404 * 63.12373 * 10 9 7 27 27 H 1.08997 * 110.40832 * 300.98234 * 10 9 7 28 28 H 1.09003 * 112.36975 * 64.06895 * 13 11 10 29 29 H 1.09004 * 112.36931 * 191.50843 * 13 11 10 30 30 H 1.08993 * 111.47373 * 170.69403 * 16 14 9 31 31 H 1.09000 * 109.12550 * 48.54063 * 16 14 9 32 32 H 1.07998 * 127.97799 * 0.03417 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1424 -2.5668 -0.0016 11 6 -0.3640 -4.1103 0.0502 12 1 -1.3414 -4.4456 0.3972 13 6 0.8739 -4.5461 0.9134 14 6 1.9101 -3.7618 -0.0018 15 1 2.9604 -3.8370 0.2797 16 6 1.5130 -4.3703 -1.3818 17 7 0.0517 -4.5831 -1.3037 18 6 -0.7433 -5.1040 -2.2593 19 8 -1.9360 -5.2279 -2.0571 20 6 -0.1668 -5.5238 -3.5499 21 6 -0.8992 -6.0668 -4.5855 22 16 0.2696 -6.3604 -5.8141 23 7 1.4982 -5.8239 -5.0085 24 7 1.1216 -5.4259 -3.8583 25 1 -0.4849 0.8401 0.0004 26 1 -0.5740 -2.1530 -0.9130 27 1 -0.5831 -2.0916 0.8747 28 1 0.8357 -4.1443 1.9259 29 1 1.0243 -5.6257 0.9075 30 1 2.0239 -5.3159 -1.5628 31 1 1.7495 -3.6545 -2.1691 32 1 -1.9609 -6.2622 -4.6177 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032544464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:53 Heat of formation + Delta-G solvation = 83.878098 kcal Electronic energy + Delta-G solvation = -19891.704800 eV Core-core repulsion = 16788.365729 eV Total energy + Delta-G solvation = -3103.339071 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24259 -41.18560 -39.28003 -35.51570 -33.60390 -32.89410 -30.79354 -30.25923 -28.07428 -26.99046 -25.85414 -24.24458 -22.03452 -21.55886 -20.94852 -19.80058 -18.55682 -17.64585 -17.36164 -17.22367 -16.82288 -16.15268 -16.00552 -15.66041 -15.03909 -14.75612 -14.00412 -13.72355 -13.53905 -13.33523 -13.15095 -13.04384 -12.85884 -12.68013 -12.31143 -12.15308 -12.11236 -11.88209 -11.56283 -11.44034 -11.18964 -11.15838 -10.87316 -10.73484 -9.64376 -8.91852 -7.85517 -5.20917 -0.93945 -0.04771 0.34330 0.55202 1.45973 1.49187 1.55061 1.82358 2.03303 2.48126 2.73094 3.29833 3.39197 3.57507 3.67497 3.79493 3.90114 3.99098 4.17135 4.32006 4.59470 4.68370 4.85911 4.95181 5.00860 5.11451 5.26354 5.43372 5.49109 5.63929 6.09396 6.40315 6.48887 6.91672 7.02730 7.69828 8.40486 9.25845 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022407 B = 0.005283 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.294989 B = 5298.430033 C = 5749.662877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.232 4.232 8 H 0.093 0.907 9 N -0.615 5.615 10 C 0.187 3.813 11 C 0.103 3.897 12 H 0.125 0.875 13 C -0.128 4.128 14 C 0.132 3.868 15 H 0.134 0.866 16 C 0.109 3.891 17 N -0.592 5.592 18 C 0.606 3.394 19 O -0.570 6.570 20 C -0.043 4.043 21 C -0.237 4.237 22 S 0.568 5.432 23 N -0.334 5.334 24 N -0.229 5.229 25 H 0.245 0.755 26 H -0.004 1.004 27 H 0.026 0.974 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -16.388 -8.994 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.361 4.361 8 H 0.111 0.889 9 N -0.339 5.339 10 C 0.061 3.939 11 C 0.001 3.999 12 H 0.143 0.857 13 C -0.167 4.167 14 C 0.025 3.975 15 H 0.151 0.849 16 C -0.015 4.015 17 N -0.323 5.323 18 C 0.391 3.609 19 O -0.450 6.450 20 C -0.190 4.190 21 C -0.394 4.394 22 S 0.703 5.297 23 N -0.315 5.315 24 N -0.098 5.098 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.944 -16.344 -9.984 19.251 hybrid contribution -1.196 1.778 0.959 2.348 sum 0.749 -14.566 -9.025 17.152 Atomic orbital electron populations 1.70142 1.06536 1.25299 1.58661 1.25658 0.96458 1.01144 1.03006 0.85149 0.77033 0.78832 0.78312 1.20632 1.22677 1.19695 1.19491 0.91233 0.83146 1.42212 0.88910 1.45418 1.01597 1.00935 1.85946 1.21543 0.84891 0.89990 0.97442 1.24349 1.00031 0.94292 0.81266 0.85711 1.24399 0.93510 1.00678 0.98163 1.23896 0.98277 0.83355 0.91972 0.84880 1.23113 0.78376 1.00157 0.99861 1.49138 1.10263 1.58083 1.14808 1.16646 0.84878 0.77733 0.81657 1.90760 1.14931 1.58862 1.80416 1.22474 0.89923 1.07658 0.98993 1.29245 1.10509 1.02370 0.97299 1.80918 0.89771 1.41383 1.17599 1.78327 1.27717 1.20272 1.05155 1.71754 1.14341 1.14836 1.08892 0.94602 0.98612 0.95573 0.89413 0.87684 0.89106 0.93697 0.75433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.97 10.56 21.65 0.23 -58.74 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.23 -12.68 10.37 84.03 0.87 -11.81 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 9 N -0.61 -30.59 3.06 -644.91 -1.98 -32.56 16 10 C 0.19 9.49 4.79 87.17 0.42 9.91 16 11 C 0.10 4.03 5.18 46.93 0.24 4.27 16 12 H 0.13 4.61 8.06 -2.39 -0.02 4.59 16 13 C -0.13 -4.10 6.93 34.17 0.24 -3.87 16 14 C 0.13 4.90 5.55 47.62 0.26 5.16 16 15 H 0.13 4.24 8.14 -2.39 -0.02 4.22 16 16 C 0.11 4.00 4.92 87.14 0.43 4.43 16 17 N -0.59 -22.91 2.94 -772.18 -2.27 -25.17 16 18 C 0.61 23.09 7.89 86.67 0.68 23.78 16 19 O -0.57 -23.77 17.15 -4.05 -0.07 -23.84 16 20 C -0.04 -1.34 6.78 41.36 0.28 -1.06 16 21 C -0.24 -5.03 11.21 67.76 0.76 -4.27 16 22 S 0.57 8.88 23.38 -56.49 -1.32 7.56 16 23 N -0.33 -8.74 12.49 37.02 0.46 -8.28 16 24 N -0.23 -7.26 9.11 -50.34 -0.46 -7.71 16 25 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.00 -0.26 7.68 -2.39 -0.02 -0.28 16 27 H 0.03 1.47 7.46 -2.39 -0.02 1.45 16 28 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.09 2.86 7.66 -2.39 -0.02 2.84 16 31 H 0.04 1.93 7.83 -2.39 -0.02 1.92 16 32 H 0.23 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -74.77 285.98 2.43 -72.34 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.15 Total: 5.29 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 4.65 Total: 23.01 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -4.01 Total: -132.47 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.07 Total: -23.84 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 8.88 SS G_CDS: -1.32 Total: 7.56 kcal Total: -74.77 2.43 -72.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032544464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.218 kcal (2) G-P(sol) polarization free energy of solvation -74.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds