Wall clock time and date at job start Tue Mar 31 2020 02:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30170 * 126.80015 * 2 1 4 4 O 1.20927 * 111.60570 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56207 * 359.75831 * 4 3 2 6 6 C 1.35446 * 106.44579 * 0.38511 * 5 4 3 7 7 C 1.50706 * 128.00650 * 179.90837 * 6 5 4 8 8 S 1.81002 * 109.47200 * 269.67872 * 7 6 5 9 9 C 1.76198 * 99.99878 * 179.97438 * 8 7 6 10 10 N 1.32392 * 126.25713 * 0.02562 * 9 8 7 11 11 N 1.28520 * 110.20260 * 179.97438 * 10 9 8 12 12 C 1.33104 * 109.74470 * 0.02562 * 11 10 9 13 13 C 1.39776 * 126.56173 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99283 * 180.02562 * 13 12 11 15 15 C 1.40075 * 120.00094 * 0.02562 * 13 12 11 16 16 N 1.30819 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47026 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46872 * 120.00292 * 17 15 13 20 20 H 1.48497 * 109.46855 * 240.00129 * 17 15 13 21 21 N 1.36671 * 126.26079 * 179.71290 * 9 8 7 22 22 C 1.46508 * 127.14714 * 0.03496 * 21 9 8 23 23 H 1.08995 * 109.46900 * 269.97251 * 1 2 3 24 24 H 1.09000 * 109.46917 * 29.97750 * 1 2 3 25 25 H 1.08998 * 109.46851 * 149.97423 * 1 2 3 26 26 H 1.08001 * 126.77592 * 180.28141 * 5 4 3 27 27 H 1.09001 * 109.46953 * 29.67575 * 7 6 5 28 28 H 1.09000 * 109.47318 * 149.67173 * 7 6 5 29 29 H 0.96999 * 119.99922 * 179.97438 * 16 15 13 30 30 H 1.09002 * 109.46602 * 90.02732 * 22 21 9 31 31 H 1.08998 * 109.46445 * 210.02383 * 22 21 9 32 32 H 1.08998 * 109.46966 * 330.02280 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 2.3540 -1.1320 -0.0006 7 6 1.9591 -2.5864 -0.0001 8 16 1.7996 -3.1689 -1.7064 9 6 1.3451 -4.8463 -1.4158 10 7 1.1897 -5.4219 -0.2337 11 7 0.8551 -6.6540 -0.3806 12 6 0.7753 -6.9469 -1.6766 13 6 0.4395 -8.1852 -2.2313 14 1 0.4070 -8.3052 -3.3041 15 6 0.1452 -9.2702 -1.3957 16 7 0.1840 -9.1246 -0.0963 17 14 -0.3029 -10.9253 -2.1371 18 1 -0.2752 -10.8278 -3.6186 19 1 0.6757 -11.9490 -1.6904 20 1 -1.6649 -11.3148 -1.6916 21 7 1.0828 -5.7895 -2.3694 22 6 1.1228 -5.6127 -3.8232 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 4.5339 -1.1535 0.0093 27 1 2.7232 -3.1702 0.5132 28 1 1.0055 -2.7038 0.5146 29 1 -0.0202 -9.8759 0.4823 30 1 2.1242 -5.8395 -4.1893 31 1 0.4039 -6.2855 -4.2909 32 1 0.8701 -4.5818 -4.0710 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118415591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:52 Heat of formation + Delta-G solvation = 123.664636 kcal Electronic energy + Delta-G solvation = -18627.125516 eV Core-core repulsion = 15525.511719 eV Total energy + Delta-G solvation = -3101.613797 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.98823 -40.55536 -35.44767 -33.74215 -33.37294 -32.56926 -29.43624 -28.85958 -28.05812 -26.51396 -25.53757 -21.88832 -21.36612 -20.87256 -20.42191 -17.66864 -17.56579 -17.34583 -16.18441 -15.48285 -14.99603 -14.76270 -14.58886 -14.02382 -13.71603 -13.37596 -13.31237 -12.83935 -12.64880 -12.46505 -12.30827 -12.24816 -11.46146 -11.35786 -11.16785 -10.99413 -10.66021 -10.37839 -9.84680 -9.78070 -9.67599 -9.37083 -8.75991 -8.48979 -8.43379 -6.91770 -6.69437 -4.62495 1.25249 1.77463 2.46753 2.80321 2.87159 3.03916 3.08429 3.18852 3.31009 3.83696 4.09835 4.18919 4.37292 4.47680 4.80047 4.98836 5.27752 5.39260 5.46599 5.50821 5.59986 5.65905 5.72877 5.84541 5.90572 6.00471 6.12619 6.71032 6.84610 7.19436 7.43499 7.83439 8.13569 8.19541 8.65682 8.80734 10.23053 10.57892 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042645 B = 0.003674 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.420137 B = 7619.602251 C = 7803.526634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.034 3.966 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.040 4.040 6 C -0.185 4.185 7 C -0.015 4.015 8 S -0.045 6.045 9 C 0.042 3.958 10 N -0.285 5.285 11 N -0.333 5.333 12 C 0.347 3.653 13 C -0.447 4.447 14 H 0.085 0.915 15 C 0.078 3.922 16 N -0.736 5.736 17 Si 0.921 3.079 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.515 5.515 22 C 0.101 3.899 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.220 0.780 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.279 0.721 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 10.962 -3.109 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 N -0.077 5.077 4 O 0.032 5.968 5 C -0.124 4.124 6 C -0.190 4.190 7 C -0.164 4.164 8 S 0.184 5.816 9 C -0.330 4.330 10 N -0.132 5.132 11 N -0.180 5.180 12 C 0.103 3.897 13 C -0.487 4.487 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.360 5.360 17 Si 0.745 3.255 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.197 1.197 21 N -0.217 5.217 22 C -0.044 4.044 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.237 0.763 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.912 12.602 -2.392 13.154 hybrid contribution -0.340 -2.357 -0.681 2.477 sum 2.573 10.245 -3.073 11.001 Atomic orbital electron populations 1.20234 0.85775 1.04226 1.03544 1.23530 0.99169 0.88095 1.01865 1.73833 0.89437 1.24081 1.20315 1.84811 1.21563 1.22884 1.67515 1.25859 1.00790 0.83459 1.02323 1.20711 0.92691 0.95953 1.09680 1.21390 1.06943 0.90547 0.97548 1.84628 1.88713 0.99209 1.09068 1.25326 1.21380 0.96351 0.89901 1.74529 1.14976 1.04568 1.19089 1.75466 1.27556 1.02859 1.12149 1.21635 0.94340 0.86538 0.87223 1.18157 1.45031 0.91035 0.94475 0.89713 1.25801 0.93791 1.00589 0.94548 1.70017 1.30403 1.31971 1.03595 0.86064 0.78813 0.80592 0.80075 1.18523 1.19705 1.19705 1.46030 1.60300 1.09710 1.05677 1.21498 1.02025 1.01839 0.78999 0.90045 0.90513 0.89329 0.76342 0.87697 0.87719 0.90983 0.92538 0.90325 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.39 36.01 0.37 -0.51 16 2 C 0.03 0.44 7.33 -82.10 -0.60 -0.16 16 3 N -0.37 -5.09 12.07 33.42 0.40 -4.69 16 4 O 0.10 1.17 11.20 17.16 0.19 1.36 16 5 C -0.04 -0.43 12.26 29.74 0.36 -0.07 16 6 C -0.18 -2.40 5.58 -104.42 -0.58 -2.98 16 7 C -0.02 -0.23 5.71 36.01 0.21 -0.03 16 8 S -0.04 -0.78 21.77 -107.50 -2.34 -3.12 16 9 C 0.04 0.98 8.09 -87.27 -0.71 0.27 16 10 N -0.29 -7.60 11.62 30.89 0.36 -7.24 16 11 N -0.33 -9.82 10.48 31.26 0.33 -9.49 16 12 C 0.35 9.53 7.53 -154.81 -1.17 8.36 16 13 C -0.45 -11.64 9.04 -38.32 -0.35 -11.99 16 14 H 0.08 2.00 7.31 -52.49 -0.38 1.62 16 15 C 0.08 1.97 5.50 -17.29 -0.10 1.87 16 16 N -0.74 -19.90 11.94 55.56 0.66 -19.24 16 17 Si 0.92 18.18 29.56 -169.99 -5.03 13.16 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 N -0.51 -12.17 3.26 -123.17 -0.40 -12.57 16 22 C 0.10 1.81 10.87 59.85 0.65 2.46 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 28 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 32 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -33.03 303.41 -6.43 -39.45 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.28 Total: 0.57 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.90 Total: -2.76 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 1.35 Total: -53.23 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.19 Total: 1.36 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.34 Total: -3.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.03 -6.43 -39.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118415591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.116 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds