Wall clock time and date at job start Tue Mar 31 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30170 * 126.80015 * 2 1 4 4 O 1.20927 * 111.60570 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56207 * 359.75831 * 4 3 2 6 6 C 1.35446 * 106.44579 * 0.38511 * 5 4 3 7 7 C 1.50706 * 128.00650 * 179.90837 * 6 5 4 8 8 S 1.81002 * 109.47200 * 269.67872 * 7 6 5 9 9 C 1.76198 * 99.99878 * 179.97438 * 8 7 6 10 10 N 1.32392 * 126.25713 * 0.02562 * 9 8 7 11 11 N 1.28520 * 110.20260 * 179.97438 * 10 9 8 12 12 C 1.33104 * 109.74470 * 0.02562 * 11 10 9 13 13 C 1.39776 * 126.56173 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99283 * 180.02562 * 13 12 11 15 15 C 1.40075 * 120.00094 * 0.02562 * 13 12 11 16 16 N 1.30819 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47026 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46872 * 120.00292 * 17 15 13 20 20 H 1.48497 * 109.46855 * 240.00129 * 17 15 13 21 21 N 1.36671 * 126.26079 * 179.71290 * 9 8 7 22 22 C 1.46508 * 127.14714 * 0.03496 * 21 9 8 23 23 H 1.08995 * 109.46900 * 269.97251 * 1 2 3 24 24 H 1.09000 * 109.46917 * 29.97750 * 1 2 3 25 25 H 1.08998 * 109.46851 * 149.97423 * 1 2 3 26 26 H 1.08001 * 126.77592 * 180.28141 * 5 4 3 27 27 H 1.09001 * 109.46953 * 29.67575 * 7 6 5 28 28 H 1.09000 * 109.47318 * 149.67173 * 7 6 5 29 29 H 0.96999 * 119.99922 * 179.97438 * 16 15 13 30 30 H 1.09002 * 109.46602 * 90.02732 * 22 21 9 31 31 H 1.08998 * 109.46445 * 210.02383 * 22 21 9 32 32 H 1.08998 * 109.46966 * 330.02280 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 2.3540 -1.1320 -0.0006 7 6 1.9591 -2.5864 -0.0001 8 16 1.7996 -3.1689 -1.7064 9 6 1.3451 -4.8463 -1.4158 10 7 1.1897 -5.4219 -0.2337 11 7 0.8551 -6.6540 -0.3806 12 6 0.7753 -6.9469 -1.6766 13 6 0.4395 -8.1852 -2.2313 14 1 0.4070 -8.3052 -3.3041 15 6 0.1452 -9.2702 -1.3957 16 7 0.1840 -9.1246 -0.0963 17 14 -0.3029 -10.9253 -2.1371 18 1 -0.2752 -10.8278 -3.6186 19 1 0.6757 -11.9490 -1.6904 20 1 -1.6649 -11.3148 -1.6916 21 7 1.0828 -5.7895 -2.3694 22 6 1.1228 -5.6127 -3.8232 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 4.5339 -1.1535 0.0093 27 1 2.7232 -3.1702 0.5132 28 1 1.0055 -2.7038 0.5146 29 1 -0.0202 -9.8759 0.4823 30 1 2.1242 -5.8395 -4.1893 31 1 0.4039 -6.2855 -4.2909 32 1 0.8701 -4.5818 -4.0710 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118415591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:51 Heat of formation + Delta-G solvation = 103.457087 kcal Electronic energy + Delta-G solvation = -18628.001781 eV Core-core repulsion = 15525.511719 eV Total energy + Delta-G solvation = -3102.490062 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.98319 -42.44202 -36.45845 -35.61462 -35.13839 -33.59107 -31.32795 -29.86253 -29.18142 -28.16365 -27.36068 -23.08305 -22.75046 -22.31960 -22.10357 -19.26351 -18.67495 -18.52762 -17.72904 -17.21013 -16.57700 -16.21437 -15.90866 -15.48598 -15.12119 -14.81531 -14.20972 -13.99758 -13.93718 -13.80794 -13.61426 -13.36490 -13.13798 -12.95979 -12.77119 -12.19351 -12.12282 -11.91746 -11.68321 -11.45610 -10.83969 -10.57542 -10.49434 -10.27762 -10.26972 -8.55064 -8.53970 -6.57858 0.11272 0.64544 1.05228 1.19857 1.43048 1.54979 1.60705 1.61839 2.19342 2.29338 2.45687 2.51898 3.12188 3.34795 3.50956 3.76730 3.94996 4.08640 4.45760 4.48872 4.55428 4.61398 4.62693 4.63790 4.76600 4.88573 4.91175 4.97144 5.18457 5.32960 5.57256 6.04670 6.23015 6.76720 6.92814 7.24836 8.41748 8.65067 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042645 B = 0.003674 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.420137 B = 7619.602251 C = 7803.526634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.028 3.972 3 N -0.390 5.390 4 O 0.095 5.905 5 C -0.010 4.010 6 C -0.210 4.210 7 C -0.007 4.007 8 S 0.001 5.999 9 C 0.054 3.946 10 N -0.329 5.329 11 N -0.388 5.388 12 C 0.317 3.683 13 C -0.472 4.472 14 H 0.103 0.897 15 C 0.030 3.970 16 N -0.788 5.788 17 Si 1.006 2.994 18 H -0.246 1.246 19 H -0.268 1.268 20 H -0.268 1.268 21 N -0.522 5.522 22 C 0.093 3.907 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.259 0.741 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.284 0.716 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 11.534 -4.852 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 N -0.098 5.098 4 O 0.034 5.966 5 C -0.094 4.094 6 C -0.216 4.216 7 C -0.155 4.155 8 S 0.230 5.770 9 C -0.320 4.320 10 N -0.173 5.173 11 N -0.234 5.234 12 C 0.071 3.929 13 C -0.512 4.512 14 H 0.121 0.879 15 C -0.191 4.191 16 N -0.413 5.413 17 Si 0.825 3.175 18 H -0.169 1.169 19 H -0.193 1.193 20 H -0.193 1.193 21 N -0.223 5.223 22 C -0.050 4.050 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.275 0.725 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.559 13.200 -4.152 14.288 hybrid contribution -0.443 -2.281 -0.151 2.329 sum 3.115 10.919 -4.303 12.143 Atomic orbital electron populations 1.20308 0.84798 1.04475 1.04339 1.23858 1.00091 0.88030 1.01283 1.73846 0.89937 1.24522 1.21545 1.84805 1.21069 1.23495 1.67200 1.26548 1.01437 0.82808 0.98649 1.20540 0.93856 0.94616 1.12591 1.21295 1.06403 0.91920 0.95931 1.84461 1.87668 0.94173 1.10741 1.26434 1.17433 0.98843 0.89254 1.74404 1.17662 1.04315 1.20927 1.75324 1.29640 1.04422 1.14051 1.22036 0.95299 0.88150 0.87428 1.18657 1.45703 0.91275 0.95573 0.87933 1.26958 0.92767 1.04704 0.94658 1.70158 1.31958 1.33610 1.05552 0.84816 0.78363 0.74596 0.79752 1.16862 1.19258 1.19271 1.46377 1.59390 1.08776 1.07761 1.21849 1.03535 1.03682 0.75885 0.89014 0.89441 0.89829 0.72502 0.87942 0.88922 0.90548 0.90736 0.89376 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 10.39 71.24 0.74 -0.96 16 2 C 0.03 0.68 7.33 43.58 0.32 1.00 16 3 N -0.39 -10.05 12.07 -49.55 -0.60 -10.65 16 4 O 0.10 2.11 11.20 71.56 0.80 2.91 16 5 C -0.01 -0.19 12.26 67.17 0.82 0.64 16 6 C -0.21 -5.04 5.58 -19.73 -0.11 -5.15 16 7 C -0.01 -0.19 5.71 71.24 0.41 0.22 16 8 S 0.00 0.04 21.77 -56.49 -1.23 -1.19 16 9 C 0.05 2.50 8.09 179.18 1.45 3.95 16 10 N -0.33 -18.01 11.62 -56.17 -0.65 -18.66 16 11 N -0.39 -23.79 10.48 -55.02 -0.58 -24.37 16 12 C 0.32 17.83 7.53 133.23 1.00 18.83 16 13 C -0.47 -24.86 9.04 23.09 0.21 -24.65 16 14 H 0.10 4.79 7.31 -2.91 -0.02 4.77 16 15 C 0.03 1.52 5.50 85.29 0.47 1.99 16 16 N -0.79 -44.09 11.94 21.85 0.26 -43.83 16 17 Si 1.01 37.14 29.56 68.60 2.03 39.16 16 18 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 19 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 21 N -0.52 -24.54 3.26 -543.60 -1.77 -26.31 16 22 C 0.09 3.16 10.87 127.77 1.39 4.54 16 23 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.26 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.09 2.95 8.14 -2.40 -0.02 2.93 16 29 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 2.80 7.54 -2.39 -0.02 2.78 16 32 H 0.09 2.59 7.84 -2.39 -0.02 2.58 16 Total: -1.00 -74.68 303.41 6.12 -68.56 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.15 Total: 13.96 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.70 Total: 0.40 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -3.34 Total: -123.81 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.80 Total: 2.91 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.23 Total: -1.19 kcal Total: -74.68 6.12 -68.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118415591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.020 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds