Wall clock time and date at job start Tue Mar 31 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48501 * 109.46816 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46845 * 299.99660 * 3 2 1 6 6 H 1.48494 * 109.47185 * 59.99670 * 3 2 1 7 7 C 1.38948 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99887 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00166 * 180.27467 * 10 9 7 13 13 H 1.09002 * 109.60050 * 22.55419 * 12 10 9 14 14 C 1.52925 * 109.60356 * 143.04215 * 12 10 9 15 15 N 1.45752 * 110.48307 * 69.00426 * 14 12 10 16 16 C 1.33349 * 124.10821 * 19.07510 * 15 14 12 17 17 O 1.21283 * 118.24593 * 177.75290 * 16 15 14 18 18 C 1.50173 * 123.51365 * 357.77394 * 16 15 14 19 19 C 1.53071 * 109.88758 * 17.58297 * 18 16 15 20 20 H 1.08998 * 109.67872 * 70.83322 * 19 18 16 21 21 C 1.53002 * 109.67747 * 191.36629 * 19 18 16 22 22 F 1.39895 * 109.47466 * 178.96685 * 21 19 18 23 23 F 1.39905 * 109.46902 * 298.97068 * 21 19 18 24 24 F 1.39903 * 109.46739 * 58.96195 * 21 19 18 25 25 H 0.96993 * 120.00268 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00240 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.29427 * 189.31645 * 14 12 10 28 28 H 1.08996 * 109.29896 * 308.68948 * 14 12 10 29 29 H 0.96999 * 117.94272 * 199.07072 * 15 14 12 30 30 H 1.08997 * 109.40470 * 257.45784 * 18 16 15 31 31 H 1.08998 * 109.33362 * 137.66505 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8630 -0.0047 13 1 0.2418 -4.7047 -0.4032 14 6 1.9886 -5.8812 -0.8691 15 7 3.2402 -6.2722 -0.2327 16 6 3.5041 -6.1046 1.0636 17 8 4.5659 -6.5071 1.4899 18 6 2.5570 -5.4445 2.0241 19 6 1.1488 -5.4089 1.4251 20 1 0.7324 -6.4160 1.4063 21 6 0.2540 -4.4965 2.2664 22 9 -1.0251 -4.4484 1.7020 23 9 0.1703 -4.9984 3.5697 24 9 0.7990 -3.2083 2.2970 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 1.3631 -6.7632 -1.0062 28 1 2.2019 -5.4397 -1.8426 29 1 3.9239 -6.6799 -0.7868 30 1 2.8924 -4.4263 2.2213 31 1 2.5393 -6.0071 2.9575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119040909.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:02 Heat of formation + Delta-G solvation = -223.782352 kcal Electronic energy + Delta-G solvation = -23831.586676 eV Core-core repulsion = 19698.004085 eV Total energy + Delta-G solvation = -4133.582591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.82663 -47.37531 -47.17146 -40.43661 -38.17646 -35.86224 -33.95607 -33.48724 -31.35942 -29.74170 -26.73624 -25.47595 -23.63505 -22.12153 -20.51032 -18.64677 -18.15273 -18.06044 -17.71302 -17.50956 -16.89265 -15.78503 -15.69944 -15.17484 -14.70995 -14.49819 -14.14704 -14.01023 -13.83511 -13.71707 -13.40499 -13.32044 -13.17638 -13.14959 -12.57159 -12.56515 -12.06036 -11.59456 -11.43317 -11.25437 -11.18792 -11.08404 -10.39670 -10.30403 -9.60718 -9.57341 -8.91885 -8.41434 -8.05716 -6.50858 -3.90813 2.90163 2.99354 3.08616 3.23111 3.29803 3.45113 3.65652 3.94428 4.04006 4.14251 4.18503 4.58778 4.75104 4.85624 4.89210 5.04521 5.19374 5.28216 5.44480 5.61291 5.64985 5.76636 5.98948 6.17445 7.01509 7.47316 7.59675 7.93442 8.46309 8.51752 9.06901 9.40251 9.89001 10.65809 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.007720 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.713350 B = 3626.052010 C = 4361.552215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.105 0.895 9 N -0.540 5.540 10 C 0.429 3.571 11 O -0.582 6.582 12 C -0.122 4.122 13 H 0.108 0.892 14 C 0.140 3.860 15 N -0.704 5.704 16 C 0.554 3.446 17 O -0.566 6.566 18 C -0.132 4.132 19 C -0.123 4.123 20 H 0.122 0.878 21 C 0.449 3.551 22 F -0.182 7.182 23 F -0.187 7.187 24 F -0.153 7.153 25 H 0.273 0.727 26 H 0.392 0.608 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.399 0.601 30 H 0.123 0.877 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -10.803 0.239 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.428 4.428 8 H 0.123 0.877 9 N -0.174 5.174 10 C 0.214 3.786 11 O -0.467 6.467 12 C -0.144 4.144 13 H 0.127 0.873 14 C 0.015 3.985 15 N -0.354 5.354 16 C 0.341 3.659 17 O -0.446 6.446 18 C -0.172 4.172 19 C -0.144 4.144 20 H 0.140 0.860 21 C 0.395 3.605 22 F -0.164 7.164 23 F -0.169 7.169 24 F -0.134 7.134 25 H 0.083 0.917 26 H 0.226 0.774 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.234 0.766 30 H 0.141 0.859 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.833 -10.682 0.620 11.068 hybrid contribution -0.426 1.050 -0.146 1.142 sum -3.259 -9.632 0.474 10.179 Atomic orbital electron populations 1.69619 1.05975 1.28320 1.49327 1.25292 0.95609 0.99847 0.96852 0.85812 0.79790 0.81055 0.77790 1.19141 1.20683 1.20646 1.19743 0.93400 0.81996 1.47638 0.87703 1.41936 1.09176 1.04570 1.61725 1.19329 0.88308 0.84155 0.86841 1.90586 1.13063 1.86573 1.56523 1.21646 1.02341 0.96822 0.93604 0.87342 1.21027 0.85049 0.96122 0.96294 1.45060 1.18651 1.62592 1.09110 1.19314 0.87023 0.76936 0.82612 1.90713 1.25772 1.51333 1.76806 1.21705 0.91072 1.05680 0.98696 1.22502 0.96506 1.00049 0.95307 0.86016 1.20446 0.79718 0.81580 0.78770 1.93173 1.41803 1.96642 1.84735 1.93159 1.96409 1.87427 1.39900 1.93397 1.84897 1.39006 1.96104 0.91721 0.77441 0.91138 0.89624 0.76591 0.85938 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.48 13.05 55.50 0.72 -22.76 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -7.90 9.68 -14.94 -0.14 -8.05 16 8 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.54 -12.70 3.73 -10.96 -0.04 -12.75 16 10 C 0.43 8.99 4.60 -10.98 -0.05 8.94 16 11 O -0.58 -14.16 13.25 5.54 0.07 -14.09 16 12 C -0.12 -1.81 2.48 -91.63 -0.23 -2.03 16 13 H 0.11 1.40 7.58 -51.93 -0.39 1.01 16 14 C 0.14 1.71 6.36 -4.48 -0.03 1.69 16 15 N -0.70 -10.22 4.86 -61.39 -0.30 -10.52 16 16 C 0.55 9.69 6.50 -11.87 -0.08 9.62 16 17 O -0.57 -11.82 17.78 5.55 0.10 -11.72 16 18 C -0.13 -2.10 4.47 -28.10 -0.13 -2.23 16 19 C -0.12 -1.69 2.14 -90.40 -0.19 -1.88 16 20 H 0.12 1.22 8.13 -51.93 -0.42 0.80 16 21 C 0.45 7.00 2.70 37.16 0.10 7.10 16 22 F -0.18 -2.77 16.70 2.25 0.04 -2.73 16 23 F -0.19 -2.77 17.06 2.25 0.04 -2.73 16 24 F -0.15 -3.03 13.16 2.25 0.03 -3.00 16 25 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.39 9.06 7.67 -40.82 -0.31 8.75 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 29 H 0.40 5.24 8.80 -40.82 -0.36 4.88 16 30 H 0.12 2.35 6.33 -51.93 -0.33 2.02 16 31 H 0.11 1.45 8.13 -51.93 -0.42 1.02 16 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -31.95 273.26 -3.68 -35.63 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -2.59 Total: 11.25 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -0.84 Total: 13.75 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.39 Total: -46.02 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.17 Total: -25.81 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.11 Total: -8.47 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.95 -3.68 -35.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119040909.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.157 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds