Wall clock time and date at job start Tue Mar 31 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86792 * 120.00311 * 2 1 4 4 H 1.48496 * 109.47453 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46983 * 299.99847 * 3 2 1 6 6 H 1.48505 * 109.47243 * 59.99514 * 3 2 1 7 7 C 1.38952 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99524 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00227 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99806 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00129 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.60058 * 340.47141 * 12 10 9 14 14 C 1.52928 * 109.60115 * 220.15182 * 12 10 9 15 15 N 1.45755 * 110.48564 * 189.49201 * 14 12 10 16 16 C 1.33350 * 124.10924 * 19.09401 * 15 14 12 17 17 O 1.21276 * 118.24840 * 177.73518 * 16 15 14 18 18 C 1.50177 * 123.50807 * 357.75854 * 16 15 14 19 19 C 1.53063 * 109.89392 * 17.58141 * 18 16 15 20 20 H 1.08999 * 109.65459 * 70.84203 * 19 18 16 21 21 C 1.52999 * 109.67875 * 191.37062 * 19 18 16 22 22 F 1.39905 * 109.46933 * 185.00645 * 21 19 18 23 23 F 1.39893 * 109.47112 * 305.00577 * 21 19 18 24 24 F 1.39897 * 109.47246 * 65.00734 * 21 19 18 25 25 H 0.96998 * 120.00164 * 179.97438 * 1 2 3 26 26 H 0.97003 * 120.00346 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.29964 * 309.79997 * 14 12 10 28 28 H 1.09001 * 109.29944 * 69.17633 * 14 12 10 29 29 H 0.97000 * 117.94206 * 199.07251 * 15 14 12 30 30 H 1.08997 * 109.40249 * 137.70695 * 18 16 15 31 31 H 1.09001 * 109.40024 * 257.54133 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2436 -4.8630 0.0010 13 1 0.2222 -4.6956 0.3430 14 6 1.9395 -5.8577 0.9310 15 7 1.3645 -7.1881 0.7771 16 6 0.6494 -7.5760 -0.2795 17 8 0.2559 -8.7226 -0.3167 18 6 0.3055 -6.6692 -1.4260 19 6 1.2259 -5.4463 -1.4171 20 1 2.2344 -5.7444 -1.7038 21 6 0.6992 -4.3977 -2.3988 22 9 1.6028 -3.3321 -2.4723 23 9 0.5550 -4.9750 -3.6649 24 9 -0.5419 -3.9270 -1.9569 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3533 -2.3907 -0.0002 27 1 3.0018 -5.8942 0.6894 28 1 1.8191 -5.5303 1.9637 29 1 1.5116 -7.8318 1.4876 30 1 0.4300 -7.2090 -2.3647 31 1 -0.7300 -6.3420 -1.3310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119040910.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:04 Heat of formation + Delta-G solvation = -230.670502 kcal Electronic energy + Delta-G solvation = -23547.126169 eV Core-core repulsion = 19413.244885 eV Total energy + Delta-G solvation = -4133.881284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.89852 -47.44071 -47.23555 -40.57763 -38.64781 -36.29426 -34.42767 -33.80126 -31.25292 -29.95169 -26.94541 -25.27297 -23.74715 -22.25292 -20.48542 -19.30955 -18.25581 -18.20841 -17.88044 -17.76443 -17.20447 -16.28487 -16.07283 -15.23934 -14.78063 -14.55594 -14.29974 -14.05664 -13.83779 -13.78849 -13.67034 -13.61547 -13.44839 -13.39031 -12.95688 -12.81502 -12.01644 -11.76236 -11.45174 -11.35235 -11.27189 -10.99393 -10.28121 -10.02010 -9.97739 -9.67384 -9.23512 -8.65224 -8.16562 -6.86299 -3.99597 2.45319 2.80555 3.02487 3.22001 3.29977 3.48316 3.51985 3.83105 3.89670 3.98551 4.20041 4.36964 4.66620 4.71294 4.76227 4.92507 4.95062 5.11994 5.21788 5.39110 5.47698 5.64152 5.79400 5.90361 6.58200 7.12711 7.65673 7.95969 8.01720 8.42801 8.62702 9.31880 9.65741 10.56143 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.006377 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.258650 B = 4389.802551 C = 4933.729853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.005 4.005 3 Si 1.096 2.904 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.379 4.379 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.436 3.564 11 O -0.580 6.580 12 C -0.113 4.113 13 H 0.097 0.903 14 C 0.129 3.871 15 N -0.716 5.716 16 C 0.529 3.471 17 O -0.557 6.557 18 C -0.133 4.133 19 C -0.124 4.124 20 H 0.128 0.872 21 C 0.452 3.548 22 F -0.154 7.154 23 F -0.186 7.186 24 F -0.181 7.181 25 H 0.263 0.737 26 H 0.376 0.624 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.403 0.597 30 H 0.117 0.883 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -9.756 -1.030 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.209 4.209 3 Si 0.921 3.079 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.508 4.508 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.221 3.779 11 O -0.465 6.465 12 C -0.136 4.136 13 H 0.115 0.885 14 C 0.005 3.995 15 N -0.367 5.367 16 C 0.315 3.685 17 O -0.436 6.436 18 C -0.173 4.173 19 C -0.145 4.145 20 H 0.146 0.854 21 C 0.398 3.602 22 F -0.135 7.135 23 F -0.168 7.168 24 F -0.162 7.162 25 H 0.075 0.925 26 H 0.210 0.790 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.239 0.761 30 H 0.135 0.865 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.010 -8.447 -1.251 8.539 hybrid contribution -0.501 -1.610 0.077 1.688 sum -0.491 -10.057 -1.175 10.137 Atomic orbital electron populations 1.70840 1.06597 1.29681 1.45866 1.26573 0.96486 1.02794 0.95069 0.83057 0.74379 0.73094 0.77326 1.20782 1.20896 1.20922 1.20622 0.94793 0.83487 1.51926 0.87898 1.41993 1.08271 1.05514 1.63108 1.19033 0.88146 0.83746 0.86961 1.90549 1.13104 1.86490 1.56391 1.21497 1.02326 0.96487 0.93284 0.88481 1.21225 0.98476 0.79840 0.99995 1.45511 1.53897 1.15346 1.21986 1.19729 0.77497 0.87997 0.83248 1.90767 1.53725 1.19343 1.79734 1.21751 1.01551 0.94544 0.99459 1.22536 1.03444 0.93740 0.94768 0.85378 1.20339 0.76257 0.82969 0.80620 1.93370 1.66419 1.57724 1.95972 1.93157 1.95807 1.84416 1.43415 1.93170 1.44196 1.89748 1.89123 0.92517 0.79006 0.89134 0.89292 0.76076 0.86480 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 13.68 55.50 0.76 -23.39 16 2 C -0.01 -0.14 5.50 -17.46 -0.10 -0.24 16 3 Si 1.10 23.48 29.92 -169.99 -5.09 18.39 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.38 -10.04 9.68 -14.93 -0.14 -10.19 16 8 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 9 N -0.55 -12.91 4.49 -10.96 -0.05 -12.96 16 10 C 0.44 9.13 4.47 -10.98 -0.05 9.08 16 11 O -0.58 -14.10 15.78 5.54 0.09 -14.01 16 12 C -0.11 -1.71 1.93 -91.63 -0.18 -1.88 16 13 H 0.10 1.34 7.82 -51.93 -0.41 0.94 16 14 C 0.13 1.61 6.35 -4.48 -0.03 1.58 16 15 N -0.72 -8.08 5.45 -61.38 -0.33 -8.41 16 16 C 0.53 6.91 7.71 -11.87 -0.09 6.82 16 17 O -0.56 -9.05 17.78 5.56 0.10 -8.95 16 18 C -0.13 -1.56 5.02 -28.10 -0.14 -1.70 16 19 C -0.12 -1.71 1.96 -90.41 -0.18 -1.89 16 20 H 0.13 1.72 8.13 -51.93 -0.42 1.29 16 21 C 0.45 7.28 2.55 37.16 0.09 7.37 16 22 F -0.15 -3.13 14.39 2.25 0.03 -3.10 16 23 F -0.19 -2.76 16.84 2.25 0.04 -2.73 16 24 F -0.18 -2.96 16.15 2.25 0.04 -2.92 16 25 H 0.26 6.90 6.77 -40.82 -0.28 6.63 16 26 H 0.38 8.37 6.55 -40.82 -0.27 8.11 16 27 H 0.09 1.21 7.54 -51.93 -0.39 0.82 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.40 3.86 8.80 -40.82 -0.36 3.51 16 30 H 0.12 1.23 8.04 -51.93 -0.42 0.81 16 31 H 0.11 1.23 7.69 -51.93 -0.40 0.83 16 LS Contribution 277.63 15.07 4.18 4.18 Total: -1.00 -31.84 277.63 -3.58 -35.42 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -2.53 Total: 9.52 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -0.81 Total: 8.96 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.38 Total: -44.76 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.19 Total: -22.96 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 0.11 Total: -8.75 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.09 Total: 18.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.84 -3.58 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119040910.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.250 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds