Wall clock time and date at job start Tue Mar 31 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86792 * 120.00311 * 2 1 4 4 H 1.48496 * 109.47453 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46983 * 299.99847 * 3 2 1 6 6 H 1.48505 * 109.47243 * 59.99514 * 3 2 1 7 7 C 1.38952 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99524 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00227 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99806 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00129 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.60058 * 340.47141 * 12 10 9 14 14 C 1.52928 * 109.60115 * 220.15182 * 12 10 9 15 15 N 1.45755 * 110.48564 * 189.49201 * 14 12 10 16 16 C 1.33350 * 124.10924 * 19.09401 * 15 14 12 17 17 O 1.21276 * 118.24840 * 177.73518 * 16 15 14 18 18 C 1.50177 * 123.50807 * 357.75854 * 16 15 14 19 19 C 1.53063 * 109.89392 * 17.58141 * 18 16 15 20 20 H 1.08999 * 109.65459 * 70.84203 * 19 18 16 21 21 C 1.52999 * 109.67875 * 191.37062 * 19 18 16 22 22 F 1.39905 * 109.46933 * 185.00645 * 21 19 18 23 23 F 1.39893 * 109.47112 * 305.00577 * 21 19 18 24 24 F 1.39897 * 109.47246 * 65.00734 * 21 19 18 25 25 H 0.96998 * 120.00164 * 179.97438 * 1 2 3 26 26 H 0.97003 * 120.00346 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.29964 * 309.79997 * 14 12 10 28 28 H 1.09001 * 109.29944 * 69.17633 * 14 12 10 29 29 H 0.97000 * 117.94206 * 199.07251 * 15 14 12 30 30 H 1.08997 * 109.40249 * 137.70695 * 18 16 15 31 31 H 1.09001 * 109.40024 * 257.54133 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2436 -4.8630 0.0010 13 1 0.2222 -4.6956 0.3430 14 6 1.9395 -5.8577 0.9310 15 7 1.3645 -7.1881 0.7771 16 6 0.6494 -7.5760 -0.2795 17 8 0.2559 -8.7226 -0.3167 18 6 0.3055 -6.6692 -1.4260 19 6 1.2259 -5.4463 -1.4171 20 1 2.2344 -5.7444 -1.7038 21 6 0.6992 -4.3977 -2.3988 22 9 1.6028 -3.3321 -2.4723 23 9 0.5550 -4.9750 -3.6649 24 9 -0.5419 -3.9270 -1.9569 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3533 -2.3907 -0.0002 27 1 3.0018 -5.8942 0.6894 28 1 1.8191 -5.5303 1.9637 29 1 1.5116 -7.8318 1.4876 30 1 0.4300 -7.2090 -2.3647 31 1 -0.7300 -6.3420 -1.3310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119040910.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:04 Heat of formation + Delta-G solvation = -254.441368 kcal Electronic energy + Delta-G solvation = -23548.156951 eV Core-core repulsion = 19413.244885 eV Total energy + Delta-G solvation = -4134.912066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.22924 -48.71265 -48.67024 -41.75329 -40.23020 -37.61652 -36.30917 -34.88443 -33.12558 -31.19996 -28.11009 -26.99548 -25.15121 -23.52098 -21.95924 -20.60334 -19.95148 -19.55596 -19.37254 -19.03209 -18.51835 -17.57098 -17.25604 -16.76080 -16.24162 -15.81753 -15.72671 -15.52229 -15.39527 -15.11571 -15.06990 -14.92588 -14.78568 -14.62528 -14.43237 -14.19720 -13.34990 -13.19262 -12.94405 -12.84124 -12.56331 -12.44610 -11.94356 -11.86712 -11.51680 -11.13391 -10.51691 -10.19418 -10.10001 -8.90500 -6.04312 1.41197 1.47604 1.55628 1.56740 1.82228 1.83838 2.10913 2.40568 2.58568 2.70497 2.72189 2.95734 3.17798 3.50443 3.53197 3.55516 3.66926 3.77452 4.07900 4.15577 4.43571 4.47905 4.61448 4.80918 5.63428 5.67125 5.95515 6.11981 6.52211 6.71392 7.02621 7.41501 7.84348 8.55927 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.006377 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.258650 B = 4389.802551 C = 4933.729853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.041 4.041 3 Si 1.135 2.865 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.398 4.398 8 H 0.079 0.921 9 N -0.569 5.569 10 C 0.449 3.551 11 O -0.612 6.612 12 C -0.108 4.108 13 H 0.116 0.884 14 C 0.139 3.861 15 N -0.701 5.701 16 C 0.532 3.468 17 O -0.587 6.587 18 C -0.125 4.125 19 C -0.114 4.114 20 H 0.134 0.866 21 C 0.448 3.552 22 F -0.184 7.184 23 F -0.177 7.177 24 F -0.183 7.183 25 H 0.259 0.741 26 H 0.381 0.619 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.415 0.585 30 H 0.135 0.865 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -10.775 -0.799 10.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.240 4.240 3 Si 0.955 3.045 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.097 0.903 9 N -0.205 5.205 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.131 4.131 13 H 0.134 0.866 14 C 0.014 3.986 15 N -0.352 5.352 16 C 0.319 3.681 17 O -0.469 6.469 18 C -0.164 4.164 19 C -0.135 4.135 20 H 0.152 0.848 21 C 0.394 3.606 22 F -0.165 7.165 23 F -0.159 7.159 24 F -0.164 7.164 25 H 0.070 0.930 26 H 0.215 0.785 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.253 0.747 30 H 0.153 0.847 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.252 -9.492 -1.003 9.548 hybrid contribution -0.376 -1.408 -0.024 1.458 sum -0.628 -10.900 -1.027 10.966 Atomic orbital electron populations 1.70916 1.07116 1.29539 1.47813 1.27741 0.96619 1.05381 0.94262 0.82586 0.73736 0.70280 0.77877 1.20133 1.20274 1.19742 1.20537 0.93951 0.85220 1.53045 0.90328 1.42013 1.08420 1.05528 1.64558 1.19946 0.87963 0.84974 0.83529 1.90535 1.15041 1.87477 1.56767 1.21470 1.02646 0.93777 0.95172 0.86622 1.21117 0.97685 0.79609 1.00191 1.45345 1.53015 1.14924 1.21960 1.19850 0.77159 0.87575 0.83519 1.90773 1.55146 1.20584 1.80356 1.21766 1.01620 0.93098 0.99926 1.22520 1.04380 0.93682 0.92894 0.84778 1.20683 0.75780 0.82628 0.81522 1.93312 1.67571 1.59472 1.96170 1.93172 1.95713 1.84020 1.42973 1.93166 1.44212 1.89882 1.89160 0.93008 0.78477 0.89707 0.87506 0.74724 0.84729 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.80 13.68 21.66 0.30 -49.51 16 2 C -0.04 -2.16 5.50 84.93 0.47 -1.69 16 3 Si 1.13 47.29 29.92 68.60 2.05 49.35 16 4 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.40 -21.44 9.68 84.04 0.81 -20.63 16 8 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 9 N -0.57 -26.63 4.49 -306.98 -1.38 -28.01 16 10 C 0.45 18.55 4.47 87.66 0.39 18.94 16 11 O -0.61 -29.68 15.78 -3.08 -0.05 -29.73 16 12 C -0.11 -3.04 1.93 -11.45 -0.02 -3.06 16 13 H 0.12 2.88 7.82 -2.39 -0.02 2.86 16 14 C 0.14 3.08 6.35 86.50 0.55 3.63 16 15 N -0.70 -13.67 5.45 -467.30 -2.55 -16.21 16 16 C 0.53 12.31 7.71 87.71 0.68 12.98 16 17 O -0.59 -17.58 17.78 -3.02 -0.05 -17.64 16 18 C -0.12 -2.53 5.02 29.71 0.15 -2.38 16 19 C -0.11 -2.90 1.96 -10.66 -0.02 -2.92 16 20 H 0.13 3.29 8.13 -2.39 -0.02 3.27 16 21 C 0.45 13.80 2.55 71.98 0.18 13.99 16 22 F -0.18 -7.49 14.39 44.97 0.65 -6.84 16 23 F -0.18 -4.94 16.84 44.97 0.76 -4.19 16 24 F -0.18 -5.73 16.15 44.97 0.73 -5.00 16 25 H 0.26 13.72 6.77 -92.71 -0.63 13.10 16 26 H 0.38 17.01 6.55 -92.71 -0.61 16.40 16 27 H 0.08 2.08 7.54 -2.38 -0.02 2.06 16 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.41 6.67 8.80 -92.71 -0.82 5.85 16 30 H 0.13 2.36 8.04 -2.39 -0.02 2.34 16 31 H 0.13 2.31 7.69 -2.39 -0.02 2.29 16 Total: -1.00 -68.68 277.63 3.58 -65.11 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.06 Total: 23.81 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 3.19 Total: 18.86 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -3.63 Total: -93.73 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -0.10 Total: -47.37 kcal Atomic # 9 Polarization: -18.16 SS G_CDS: 2.13 Total: -16.03 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.05 Total: 49.35 kcal Total: -68.68 3.58 -65.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119040910.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.336 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds