Wall clock time and date at job start Tue Mar 31 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47337 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47387 * 300.00454 * 3 2 1 6 6 H 1.48510 * 109.47014 * 60.00056 * 3 2 1 7 7 C 1.38950 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00459 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99269 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00184 * 179.97438 * 10 9 7 13 13 H 1.08989 * 109.73625 * 337.39379 * 12 10 9 14 14 C 1.52930 * 109.61874 * 216.97823 * 12 10 9 15 15 N 1.45755 * 110.48591 * 291.02795 * 14 12 10 16 16 C 1.33356 * 124.10070 * 340.89039 * 15 14 12 17 17 O 1.21282 * 118.24415 * 182.26812 * 16 15 14 18 18 C 1.50172 * 123.50903 * 2.24011 * 16 15 14 19 19 C 1.53062 * 109.89728 * 342.42085 * 18 16 15 20 20 H 1.08999 * 109.67511 * 289.17013 * 19 18 16 21 21 C 1.52991 * 109.67767 * 168.66648 * 19 18 16 22 22 F 1.39903 * 109.47418 * 60.50275 * 21 19 18 23 23 F 1.39904 * 109.47396 * 180.49912 * 21 19 18 24 24 F 1.39897 * 109.47379 * 300.49730 * 21 19 18 25 25 H 0.97005 * 119.99974 * 359.97438 * 1 2 3 26 26 H 0.97006 * 120.00260 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.31803 * 170.70915 * 14 12 10 28 28 H 1.09009 * 109.12646 * 51.22606 * 14 12 10 29 29 H 0.96996 * 117.94839 * 160.91197 * 15 14 12 30 30 H 1.09002 * 109.40082 * 222.28915 * 18 16 15 31 31 H 1.09003 * 109.39845 * 102.55450 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2436 -4.8630 -0.0010 13 1 0.2399 -4.7082 0.3945 14 6 1.9844 -5.8833 0.8644 15 7 3.2389 -6.2728 0.2327 16 6 3.5084 -6.1026 -1.0622 17 8 4.5719 -6.5044 -1.4847 18 6 2.5653 -5.4407 -2.0253 19 6 1.1546 -5.4061 -1.4323 20 1 0.7381 -6.4133 -1.4173 21 6 0.2633 -4.4927 -2.2761 22 9 0.1948 -4.9861 -3.5835 23 9 -1.0216 -4.4553 -1.7240 24 9 0.8015 -3.2015 -2.2925 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3907 -0.0005 27 1 1.3586 -6.7658 0.9969 28 1 2.1937 -5.4406 1.8383 29 1 3.9202 -6.6816 0.7890 30 1 2.5512 -6.0002 -2.9607 31 1 2.9016 -4.4221 -2.2192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119040911.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:06 Heat of formation + Delta-G solvation = -247.969747 kcal Electronic energy + Delta-G solvation = -23833.709818 eV Core-core repulsion = 19699.078382 eV Total energy + Delta-G solvation = -4134.631436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.08610 -48.57586 -48.52423 -41.79057 -39.78472 -37.31606 -35.82626 -34.68708 -33.23441 -31.06418 -27.98476 -27.23006 -24.97369 -23.41094 -21.98313 -20.26795 -19.63904 -19.39881 -19.05149 -18.85011 -18.25809 -17.22316 -17.06029 -16.54177 -16.43953 -15.90663 -15.71676 -15.38804 -15.20254 -14.95918 -14.76053 -14.65050 -14.60188 -14.43652 -14.08370 -13.87751 -13.49890 -13.31493 -12.95548 -12.74005 -12.45066 -12.37994 -12.36397 -12.13156 -11.47565 -10.96294 -10.39814 -9.96286 -9.87511 -8.45965 -5.91978 1.33248 1.40819 1.53343 1.65284 1.69592 1.93714 2.27798 2.40170 2.74700 2.84762 2.93522 3.13125 3.23530 3.59861 3.67092 3.71413 3.82282 4.11582 4.33194 4.41277 4.50867 4.69233 4.75476 4.80896 5.43180 5.87543 5.99956 6.36573 6.58037 7.13848 7.24316 7.56617 8.10212 8.70946 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.007721 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.763567 B = 3625.810719 C = 4359.835327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.009 4.009 3 Si 0.984 3.016 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.322 4.322 8 H 0.077 0.923 9 N -0.554 5.554 10 C 0.436 3.564 11 O -0.617 6.617 12 C -0.118 4.118 13 H 0.138 0.862 14 C 0.137 3.863 15 N -0.696 5.696 16 C 0.547 3.453 17 O -0.611 6.611 18 C -0.131 4.131 19 C -0.110 4.110 20 H 0.178 0.822 21 C 0.446 3.554 22 F -0.182 7.182 23 F -0.177 7.177 24 F -0.184 7.184 25 H 0.276 0.724 26 H 0.393 0.607 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.406 0.594 30 H 0.126 0.874 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 -12.449 0.431 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.452 4.452 8 H 0.095 0.905 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.140 4.140 13 H 0.156 0.844 14 C 0.013 3.987 15 N -0.345 5.345 16 C 0.334 3.666 17 O -0.494 6.494 18 C -0.171 4.171 19 C -0.130 4.130 20 H 0.195 0.805 21 C 0.392 3.608 22 F -0.164 7.164 23 F -0.159 7.159 24 F -0.166 7.166 25 H 0.086 0.914 26 H 0.227 0.773 27 H 0.150 0.850 28 H 0.107 0.893 29 H 0.242 0.758 30 H 0.144 0.856 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.261 -12.335 0.087 13.051 hybrid contribution 0.029 1.479 -0.072 1.481 sum -4.232 -10.856 0.015 11.652 Atomic orbital electron populations 1.69671 1.06652 1.29047 1.50137 1.25918 0.96412 1.02134 0.96499 0.84998 0.78104 0.77846 0.78187 1.20019 1.20126 1.19520 1.19588 0.92469 0.83971 1.49202 0.90470 1.41958 1.09057 1.04657 1.63232 1.20430 0.88190 0.85625 0.83449 1.90571 1.15225 1.87627 1.57016 1.21727 1.03278 0.93618 0.95384 0.84371 1.21425 0.84394 0.97657 0.95210 1.45110 1.19736 1.61300 1.08383 1.19549 0.86633 0.76724 0.83653 1.90686 1.27338 1.53445 1.77949 1.21621 0.92173 1.03498 0.99772 1.22603 0.94864 1.02113 0.93432 0.80482 1.20739 0.80058 0.80625 0.79377 1.93168 1.96462 1.87414 1.39348 1.93184 1.40973 1.96572 1.85126 1.93344 1.85723 1.41243 1.96280 0.91422 0.77295 0.84982 0.89263 0.75804 0.85596 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.35 13.05 21.66 0.28 -48.06 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.98 42.77 29.55 68.60 2.03 44.80 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.32 -17.58 9.68 84.04 0.81 -16.76 16 8 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 9 N -0.55 -26.31 3.71 -306.99 -1.14 -27.45 16 10 C 0.44 18.09 4.60 87.66 0.40 18.49 16 11 O -0.62 -30.47 13.23 -3.06 -0.04 -30.51 16 12 C -0.12 -3.12 2.48 -11.45 -0.03 -3.15 16 13 H 0.14 2.94 7.61 -2.39 -0.02 2.92 16 14 C 0.14 2.73 6.36 86.50 0.55 3.28 16 15 N -0.70 -18.38 4.86 -467.29 -2.27 -20.65 16 16 C 0.55 18.42 6.50 87.71 0.57 18.99 16 17 O -0.61 -25.44 17.78 -3.04 -0.05 -25.50 16 18 C -0.13 -4.00 4.46 29.70 0.13 -3.87 16 19 C -0.11 -2.66 2.13 -10.66 -0.02 -2.68 16 20 H 0.18 2.44 8.13 -2.39 -0.02 2.42 16 21 C 0.45 12.98 2.70 71.98 0.19 13.18 16 22 F -0.18 -5.02 17.04 44.97 0.77 -4.25 16 23 F -0.18 -4.88 16.73 44.97 0.75 -4.13 16 24 F -0.18 -7.35 13.15 44.97 0.59 -6.76 16 25 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 26 H 0.39 18.19 7.67 -92.70 -0.71 17.48 16 27 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.81 8.12 -2.38 -0.02 1.79 16 29 H 0.41 9.75 8.80 -92.71 -0.82 8.93 16 30 H 0.13 3.25 8.12 -2.39 -0.02 3.23 16 31 H 0.08 3.27 6.34 -2.39 -0.02 3.25 16 Total: -1.00 -72.90 273.23 3.69 -69.21 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.31 Total: 25.83 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: 3.08 Total: 27.47 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -3.13 Total: -96.16 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.09 Total: -56.01 kcal Atomic # 9 Polarization: -17.25 SS G_CDS: 2.11 Total: -15.14 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.90 3.69 -69.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119040911.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.757 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds