Wall clock time and date at job start Tue Mar 31 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30389 * 125.90067 * 2 1 4 4 N 1.39916 * 109.15904 * 179.80446 * 3 2 1 5 5 C 1.46498 * 125.76958 * 180.27584 * 4 3 2 6 6 C 1.34897 * 108.45879 * 0.39629 * 4 3 2 7 7 N 1.38659 * 126.42103 * 179.88246 * 6 4 3 8 8 C 1.34779 * 120.00090 * 330.26447 * 7 6 4 9 9 O 1.21274 * 120.00112 * 354.14109 * 8 7 6 10 10 C 1.50703 * 119.99761 * 174.14408 * 8 7 6 11 11 S 1.81006 * 109.46805 * 179.97438 * 10 8 7 12 12 C 1.76195 * 99.99691 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00465 * 0.02562 * 12 11 10 14 14 C 1.38809 * 119.99683 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99641 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47234 * 60.00264 * 16 14 12 18 18 H 1.48496 * 109.46785 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47348 * 299.99924 * 16 14 12 20 20 C 1.39069 * 107.15048 * 359.61729 * 6 4 3 21 21 C 1.43200 * 126.47983 * 180.24103 * 20 6 4 22 22 N 3.59298 * 90.82818 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46441 * 269.95750 * 1 2 3 24 24 H 1.09005 * 109.46875 * 29.95344 * 1 2 3 25 25 H 1.08994 * 109.46694 * 149.95283 * 1 2 3 26 26 H 1.09006 * 109.46856 * 272.72672 * 5 4 3 27 27 H 1.09006 * 109.47363 * 32.71790 * 5 4 3 28 28 H 1.08993 * 109.47538 * 152.72414 * 5 4 3 29 29 H 0.96999 * 119.99931 * 150.25863 * 7 6 4 30 30 H 1.08997 * 109.46892 * 299.99403 * 10 8 7 31 31 H 1.08999 * 109.47021 * 59.99759 * 10 8 7 32 32 H 0.96996 * 119.99628 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2716 1.0562 0.0000 4 7 3.6114 0.6532 0.0045 5 6 4.7739 1.5448 0.0117 6 6 3.6519 -0.6952 -0.0015 7 7 4.7918 -1.4846 -0.0020 8 6 5.9244 -1.0324 -0.5759 9 8 5.9191 0.0169 -1.1838 10 6 7.1975 -1.8309 -0.4621 11 16 8.5306 -0.9678 -1.3305 12 6 9.8590 -2.0892 -1.0433 13 1 9.6909 -2.9909 -0.4732 14 6 11.1216 -1.8136 -1.5500 15 7 11.3263 -0.7149 -2.2453 16 14 12.5301 -3.0022 -1.2449 17 1 12.1931 -4.3280 -1.8229 18 1 13.7645 -2.4817 -1.8856 19 1 12.7526 -3.1415 0.2167 20 6 2.3360 -1.1449 -0.0010 21 6 1.9027 -2.5098 -0.0014 22 7 1.5590 -3.5926 -0.0016 23 1 -0.3632 -0.0008 1.0277 24 1 -0.3633 0.8905 -0.5131 25 1 -0.3632 -0.8895 -0.5146 26 1 5.0366 1.8073 -1.0131 27 1 4.5336 2.4506 0.5685 28 1 5.6161 1.0400 0.4848 29 1 4.7742 -2.3623 0.4106 30 1 7.4622 -1.9447 0.5891 31 1 7.0506 -2.8144 -0.9084 32 1 12.2087 -0.5223 -2.5990 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119480501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:41 Heat of formation + Delta-G solvation = 79.593080 kcal Electronic energy + Delta-G solvation = -18580.139354 eV Core-core repulsion = 15476.614470 eV Total energy + Delta-G solvation = -3103.524883 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.97805 -39.62851 -36.51214 -35.27779 -33.94457 -32.57908 -30.70014 -29.78261 -28.79165 -26.04855 -25.64805 -22.70007 -21.88704 -19.63502 -18.92480 -18.01339 -17.34262 -16.86412 -16.24339 -15.38745 -14.98760 -14.92953 -14.40994 -13.91567 -13.70333 -13.65017 -13.31366 -13.22652 -12.92704 -12.82389 -12.67168 -12.54366 -12.40449 -11.90868 -11.20900 -11.14562 -11.11029 -10.91267 -10.67983 -10.00684 -9.89827 -9.20131 -9.10195 -8.50506 -8.47945 -6.71372 -6.36888 -4.10337 1.16884 1.90169 1.94842 2.45299 2.60468 2.63671 3.13559 3.15055 3.20529 3.32884 3.46791 3.91548 4.04767 4.44844 4.58920 4.69242 4.99364 5.10713 5.12920 5.32564 5.35285 5.38470 5.44509 5.54282 5.63155 5.70234 5.80256 5.86341 6.22107 6.63821 6.86150 7.44673 7.45586 7.56475 7.84912 8.20070 9.09107 10.70433 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.034610 B = 0.003695 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.819908 B = 7576.366851 C = 8248.343826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.138 3.862 3 N -0.284 5.284 4 N -0.345 5.345 5 C 0.110 3.890 6 C 0.392 3.608 7 N -0.653 5.653 8 C 0.527 3.473 9 O -0.484 6.484 10 C -0.155 4.155 11 S -0.051 6.051 12 C -0.540 4.540 13 H 0.075 0.925 14 C 0.076 3.924 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.229 4.229 21 C 0.298 3.702 22 N -0.441 5.441 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.428 0.572 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 1.733 6.654 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 N -0.106 5.106 4 N -0.126 5.126 5 C -0.029 4.029 6 C 0.160 3.840 7 N -0.306 5.306 8 C 0.316 3.684 9 O -0.355 6.355 10 C -0.305 4.305 11 S 0.175 5.825 12 C -0.688 4.688 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.501 5.501 16 Si 0.746 3.254 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.248 4.248 21 C -0.017 4.017 22 N -0.119 5.119 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.267 0.733 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.883 3.336 5.530 17.145 hybrid contribution 1.294 -2.840 1.042 3.290 sum -14.589 0.496 6.572 16.009 Atomic orbital electron populations 1.20287 0.85662 1.03956 1.03654 1.22145 0.96864 0.88069 0.96093 1.77250 0.84875 1.21399 1.27043 1.48470 1.06741 1.02550 1.54860 1.22389 0.82465 0.92539 1.05524 1.17985 0.87003 0.83638 0.95367 1.43222 1.08265 1.20469 1.58602 1.20871 0.83781 0.86093 0.77692 1.90815 1.84714 1.22121 1.37840 1.23582 0.96289 1.03738 1.06938 1.85364 0.98597 1.30147 1.68399 1.22796 0.95510 1.09526 1.41000 0.90708 1.24995 0.98239 0.95879 0.94271 1.69982 1.23522 1.23816 1.32813 0.86193 0.80077 0.80378 0.78719 1.19821 1.20721 1.19834 1.15289 0.89890 0.87446 1.32216 1.24339 0.93930 0.91151 0.92244 1.81282 1.07202 1.10850 1.12523 0.89722 0.89877 0.90271 0.87880 0.90028 0.89131 0.73279 0.88209 0.88154 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.26 36.01 0.37 -0.21 16 2 C 0.14 1.55 7.26 -82.02 -0.60 0.96 16 3 N -0.28 -3.66 12.48 33.90 0.42 -3.24 16 4 N -0.34 -4.59 3.95 -66.69 -0.26 -4.85 16 5 C 0.11 1.37 9.21 59.85 0.55 1.92 16 6 C 0.39 5.06 7.34 -153.20 -1.12 3.93 16 7 N -0.65 -7.91 5.33 -11.04 -0.06 -7.97 16 8 C 0.53 8.06 6.80 -10.98 -0.07 7.99 16 9 O -0.48 -8.59 10.89 5.56 0.06 -8.53 16 10 C -0.16 -2.64 6.16 36.01 0.22 -2.42 16 11 S -0.05 -1.24 20.57 -107.50 -2.21 -3.45 16 12 C -0.54 -14.29 9.50 30.94 0.29 -14.00 16 13 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 14 C 0.08 2.05 5.49 -17.43 -0.10 1.95 16 15 N -0.87 -24.71 13.22 55.49 0.73 -23.97 16 16 Si 0.92 20.36 29.55 -169.99 -5.02 15.34 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 C -0.23 -2.78 6.00 -106.48 -0.64 -3.42 16 21 C 0.30 3.73 15.44 -22.47 -0.35 3.38 16 22 N -0.44 -6.20 18.54 41.84 0.78 -5.42 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.55 7.98 -51.93 -0.41 0.14 16 26 H 0.10 1.43 6.89 -51.93 -0.36 1.07 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 1.17 6.12 -51.93 -0.32 0.86 16 29 H 0.43 4.01 8.83 -40.82 -0.36 3.65 16 30 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 305.94 15.07 4.61 4.61 Total: -1.00 -31.75 305.94 -5.50 -37.25 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.11 Total: 0.15 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.44 Total: 0.09 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 1.61 Total: -45.45 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.06 Total: -8.53 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.21 Total: -3.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.75 -5.50 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119480501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.841 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds