Wall clock time and date at job start Tue Mar 31 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30389 * 125.90067 * 2 1 4 4 N 1.39916 * 109.15904 * 179.80446 * 3 2 1 5 5 C 1.46498 * 125.76958 * 180.27584 * 4 3 2 6 6 C 1.34897 * 108.45879 * 0.39629 * 4 3 2 7 7 N 1.38659 * 126.42103 * 179.88246 * 6 4 3 8 8 C 1.34779 * 120.00090 * 330.26447 * 7 6 4 9 9 O 1.21274 * 120.00112 * 354.14109 * 8 7 6 10 10 C 1.50703 * 119.99761 * 174.14408 * 8 7 6 11 11 S 1.81006 * 109.46805 * 179.97438 * 10 8 7 12 12 C 1.76195 * 99.99691 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00465 * 0.02562 * 12 11 10 14 14 C 1.38809 * 119.99683 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99641 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47234 * 60.00264 * 16 14 12 18 18 H 1.48496 * 109.46785 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47348 * 299.99924 * 16 14 12 20 20 C 1.39069 * 107.15048 * 359.61729 * 6 4 3 21 21 C 1.43200 * 126.47983 * 180.24103 * 20 6 4 22 22 N 3.59298 * 90.82818 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46441 * 269.95750 * 1 2 3 24 24 H 1.09005 * 109.46875 * 29.95344 * 1 2 3 25 25 H 1.08994 * 109.46694 * 149.95283 * 1 2 3 26 26 H 1.09006 * 109.46856 * 272.72672 * 5 4 3 27 27 H 1.09006 * 109.47363 * 32.71790 * 5 4 3 28 28 H 1.08993 * 109.47538 * 152.72414 * 5 4 3 29 29 H 0.96999 * 119.99931 * 150.25863 * 7 6 4 30 30 H 1.08997 * 109.46892 * 299.99403 * 10 8 7 31 31 H 1.08999 * 109.47021 * 59.99759 * 10 8 7 32 32 H 0.96996 * 119.99628 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2716 1.0562 0.0000 4 7 3.6114 0.6532 0.0045 5 6 4.7739 1.5448 0.0117 6 6 3.6519 -0.6952 -0.0015 7 7 4.7918 -1.4846 -0.0020 8 6 5.9244 -1.0324 -0.5759 9 8 5.9191 0.0169 -1.1838 10 6 7.1975 -1.8309 -0.4621 11 16 8.5306 -0.9678 -1.3305 12 6 9.8590 -2.0892 -1.0433 13 1 9.6909 -2.9909 -0.4732 14 6 11.1216 -1.8136 -1.5500 15 7 11.3263 -0.7149 -2.2453 16 14 12.5301 -3.0022 -1.2449 17 1 12.1931 -4.3280 -1.8229 18 1 13.7645 -2.4817 -1.8856 19 1 12.7526 -3.1415 0.2167 20 6 2.3360 -1.1449 -0.0010 21 6 1.9027 -2.5098 -0.0014 22 7 1.5590 -3.5926 -0.0016 23 1 -0.3632 -0.0008 1.0277 24 1 -0.3633 0.8905 -0.5131 25 1 -0.3632 -0.8895 -0.5146 26 1 5.0366 1.8073 -1.0131 27 1 4.5336 2.4506 0.5685 28 1 5.6161 1.0400 0.4848 29 1 4.7742 -2.3623 0.4106 30 1 7.4622 -1.9447 0.5891 31 1 7.0506 -2.8144 -0.9084 32 1 12.2087 -0.5223 -2.5990 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119480501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:40 Heat of formation + Delta-G solvation = 58.967288 kcal Electronic energy + Delta-G solvation = -18581.033755 eV Core-core repulsion = 15476.614470 eV Total energy + Delta-G solvation = -3104.419285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.99812 -40.80811 -37.55931 -36.40831 -34.89480 -34.59218 -31.89144 -30.62080 -29.93794 -27.67796 -26.96071 -23.83405 -22.89872 -20.69567 -20.20591 -19.52402 -18.53409 -18.04952 -17.33403 -16.87931 -16.49137 -16.22341 -15.91845 -15.22779 -14.71942 -14.61728 -14.51329 -14.23736 -14.11273 -14.02363 -13.57882 -13.55618 -13.29723 -13.19578 -12.91912 -12.83776 -12.65175 -12.12767 -11.78926 -11.70108 -11.14498 -11.12658 -10.33708 -10.07953 -9.50293 -8.67339 -8.36525 -6.13418 0.10452 0.87432 1.03359 1.19796 1.32823 1.43565 1.44849 1.53526 1.60890 1.88706 2.24789 2.47610 2.95417 2.98979 3.18205 3.52251 3.68842 3.73049 4.14603 4.20627 4.26354 4.38972 4.45351 4.58473 4.77918 4.83746 4.85788 5.00016 5.42405 5.42787 5.64189 5.85195 6.18688 6.48333 6.56367 6.68692 7.06552 8.71834 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.034610 B = 0.003695 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.819908 B = 7576.366851 C = 8248.343826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.144 3.856 3 N -0.300 5.300 4 N -0.354 5.354 5 C 0.115 3.885 6 C 0.381 3.619 7 N -0.635 5.635 8 C 0.535 3.465 9 O -0.511 6.511 10 C -0.132 4.132 11 S -0.128 6.128 12 C -0.550 4.550 13 H 0.084 0.916 14 C 0.018 3.982 15 N -0.909 5.909 16 Si 0.992 3.008 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.262 1.262 20 C -0.227 4.227 21 C 0.316 3.684 22 N -0.464 5.464 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.442 0.558 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.909 0.534 7.831 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.025 4.025 3 N -0.122 5.122 4 N -0.135 5.135 5 C -0.024 4.024 6 C 0.149 3.851 7 N -0.288 5.288 8 C 0.323 3.677 9 O -0.384 6.384 10 C -0.283 4.283 11 S 0.099 5.901 12 C -0.698 4.698 13 H 0.103 0.897 14 C -0.187 4.187 15 N -0.545 5.545 16 Si 0.814 3.186 17 H -0.189 1.189 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.247 4.247 21 C 0.002 3.998 22 N -0.143 5.143 23 H 0.122 0.878 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.284 0.716 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.048 2.112 6.730 18.450 hybrid contribution 1.483 -2.450 0.713 2.951 sum -15.565 -0.338 7.444 17.257 Atomic orbital electron populations 1.20474 0.82957 1.04907 1.05200 1.22754 0.98398 0.87107 0.94288 1.77265 0.84746 1.22194 1.28013 1.48583 1.07126 1.02738 1.55014 1.22280 0.82273 0.93255 1.04612 1.18120 0.87209 0.83783 0.95952 1.42855 1.07212 1.20873 1.57844 1.20476 0.84048 0.85442 0.77708 1.90837 1.85107 1.23204 1.39233 1.23381 0.94297 1.03434 1.07208 1.85452 1.01715 1.32469 1.70456 1.23187 0.96187 1.09816 1.40588 0.89745 1.26020 1.01182 0.97562 0.93956 1.70136 1.24112 1.25941 1.34305 0.85089 0.76403 0.78045 0.79036 1.18916 1.20634 1.18667 1.15329 0.89699 0.87492 1.32137 1.24224 0.93199 0.90846 0.91484 1.81312 1.08035 1.11486 1.13419 0.87763 0.88671 0.89558 0.89716 0.87873 0.89885 0.71579 0.85871 0.86429 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.26 71.24 0.73 -0.21 16 2 C 0.14 2.94 7.26 43.54 0.32 3.26 16 3 N -0.30 -7.29 12.48 -46.66 -0.58 -7.87 16 4 N -0.35 -9.06 3.95 -364.91 -1.44 -10.50 16 5 C 0.12 2.85 9.21 127.77 1.18 4.03 16 6 C 0.38 9.28 7.34 132.40 0.97 10.25 16 7 N -0.63 -14.32 5.33 -307.25 -1.64 -15.95 16 8 C 0.54 15.86 6.80 87.66 0.60 16.46 16 9 O -0.51 -18.23 10.89 -3.01 -0.03 -18.26 16 10 C -0.13 -4.34 6.16 71.24 0.44 -3.90 16 11 S -0.13 -6.27 20.57 -56.49 -1.16 -7.43 16 12 C -0.55 -29.02 9.50 67.96 0.65 -28.37 16 13 H 0.08 4.12 7.80 -2.91 -0.02 4.09 16 14 C 0.02 0.98 5.49 84.86 0.47 1.44 16 15 N -0.91 -52.80 13.22 21.65 0.29 -52.51 16 16 Si 0.99 41.43 29.55 68.60 2.03 43.46 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 C -0.23 -5.07 6.00 -21.07 -0.13 -5.20 16 21 C 0.32 7.28 15.44 88.33 1.36 8.65 16 22 N -0.46 -12.21 18.54 19.00 0.35 -11.86 16 23 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.96 8.14 -2.38 -0.02 0.95 16 25 H 0.09 0.96 7.98 -2.39 -0.02 0.94 16 26 H 0.08 2.42 6.89 -2.38 -0.02 2.40 16 27 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.08 2.15 6.12 -2.39 -0.01 2.14 16 29 H 0.44 7.27 8.83 -92.71 -0.82 6.46 16 30 H 0.12 3.49 8.14 -2.40 -0.02 3.47 16 31 H 0.12 3.49 8.14 -2.40 -0.02 3.47 16 32 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -68.86 305.94 4.75 -64.11 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.36 Total: 10.41 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 6.58 Total: 6.41 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -3.02 Total: -98.69 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.03 Total: -18.26 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -1.16 Total: -7.43 kcal Total: -68.86 4.75 -64.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119480501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.080 kcal (2) G-P(sol) polarization free energy of solvation -68.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds