Wall clock time and date at job start Tue Mar 31 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00366 * 2 1 4 4 H 1.48499 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46824 * 300.00297 * 3 2 1 6 6 H 1.48500 * 109.47169 * 60.00286 * 3 2 1 7 7 C 1.38814 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00100 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99794 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46678 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46678 * 179.97438 * 11 10 9 13 13 C 1.34785 * 119.99911 * 180.02562 * 12 11 10 14 14 O 1.21758 * 119.99823 * 4.93565 * 13 12 11 15 15 C 1.46259 * 119.99806 * 184.94604 * 13 12 11 16 16 C 1.33483 * 122.20224 * 185.66708 * 15 13 12 17 17 S 1.75726 * 109.85289 * 180.02562 * 16 15 13 18 18 C 1.75945 * 91.05571 * 359.97438 * 17 16 15 19 19 C 1.36282 * 142.80087 * 179.97438 * 18 17 16 20 20 N 1.33747 * 107.81920 * 180.02562 * 19 18 17 21 21 C 1.30349 * 109.46003 * 0.02562 * 20 19 18 22 22 N 1.35929 * 109.81930 * 0.02562 * 18 17 16 23 23 H 0.96999 * 119.99810 * 359.97438 * 1 2 3 24 24 H 0.96994 * 119.99833 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.46745 * 59.99942 * 10 9 7 26 26 H 1.08997 * 109.47127 * 299.99683 * 10 9 7 27 27 H 1.08998 * 109.47334 * 60.00604 * 11 10 9 28 28 H 1.08997 * 109.47329 * 299.99861 * 11 10 9 29 29 H 0.96994 * 120.00373 * 0.02562 * 12 11 10 30 30 H 1.07992 * 125.07644 * 0.03766 * 16 15 13 31 31 H 1.08004 * 126.09482 * 0.04339 * 19 18 17 32 32 H 1.08002 * 125.57611 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 7 1.7962 -6.0884 -0.0025 13 6 1.1223 -7.2557 -0.0026 14 8 -0.0920 -7.2575 -0.0920 15 6 1.8496 -8.5200 0.1048 16 6 1.2400 -9.7027 -0.0018 17 16 2.4141 -10.9977 0.1779 18 6 3.7145 -9.8326 0.3949 19 6 5.0562 -9.7311 0.6115 20 7 5.3641 -8.4309 0.6701 21 6 4.2840 -7.7208 0.5018 22 7 3.2179 -8.5692 0.3243 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3880 0.0002 25 1 2.6853 -3.7149 0.8878 26 1 2.6839 -3.7142 -0.8922 27 1 0.4361 -4.7618 -0.8900 28 1 0.4381 -4.7621 0.8899 29 1 2.7661 -6.0885 -0.0036 30 1 0.1830 -9.8428 -0.1732 31 1 5.7477 -10.5540 0.7167 32 1 4.2350 -6.6419 0.5020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134625965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:51 Heat of formation + Delta-G solvation = 82.160994 kcal Electronic energy + Delta-G solvation = -18542.925770 eV Core-core repulsion = 15439.512240 eV Total energy + Delta-G solvation = -3103.413530 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.13392 -39.96491 -36.67819 -35.90372 -34.10442 -31.41905 -30.80671 -29.95824 -28.12884 -25.23126 -23.58040 -22.66671 -21.91405 -21.67790 -20.62438 -19.03594 -17.46701 -16.92848 -16.61584 -16.10198 -15.47626 -15.45297 -15.16435 -14.60571 -14.49084 -14.00458 -13.89869 -13.66218 -13.27611 -12.93950 -12.35133 -11.91454 -11.62451 -11.22973 -10.94028 -10.87545 -10.75780 -10.64556 -10.51519 -10.11465 -9.83285 -9.82527 -9.27364 -8.97832 -7.88042 -7.07282 -5.85657 -3.17130 0.18858 0.64442 1.07133 1.36211 2.02464 2.54032 2.83409 2.87587 3.39113 3.44821 3.47096 3.94356 4.13401 4.44316 4.53935 4.70909 4.90934 5.07520 5.30909 5.41015 5.42897 5.62238 5.78017 5.92274 5.94125 6.20497 6.46076 6.54928 6.56389 7.14777 7.38943 7.61263 7.77637 8.31368 9.43258 9.95806 10.30597 11.36810 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.003284 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.578516 B = 8523.193986 C = 9355.801907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.728 5.728 10 C 0.143 3.857 11 C 0.108 3.892 12 N -0.714 5.714 13 C 0.578 3.422 14 O -0.516 6.516 15 C 0.026 3.974 16 C -0.135 4.135 17 S 0.178 5.822 18 C -0.099 4.099 19 C 0.024 3.976 20 N -0.442 5.442 21 C 0.190 3.810 22 N -0.399 5.399 23 H 0.257 0.743 24 H 0.387 0.613 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.395 0.605 30 H 0.205 0.795 31 H 0.185 0.815 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 -23.993 0.325 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.014 4.014 12 N -0.367 5.367 13 C 0.360 3.640 14 O -0.392 6.392 15 C -0.087 4.087 16 C -0.276 4.276 17 S 0.438 5.562 18 C -0.324 4.324 19 C -0.134 4.134 20 N -0.156 5.156 21 C -0.092 4.092 22 N -0.080 5.080 23 H 0.067 0.933 24 H 0.221 0.779 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.232 0.768 30 H 0.222 0.778 31 H 0.202 0.798 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.817 -24.871 0.367 25.545 hybrid contribution -0.116 2.151 -0.095 2.156 sum 5.701 -22.721 0.272 23.427 Atomic orbital electron populations 1.69675 1.05181 1.25848 1.57056 1.24789 0.95577 0.97885 1.02449 0.86071 0.78784 0.83750 0.77272 1.20424 1.21721 1.21711 1.19234 0.91112 0.83728 1.43650 0.90878 1.42164 1.05997 0.99430 1.89760 1.20773 0.93435 0.85668 0.98667 1.21760 0.95616 0.80780 1.03294 1.46080 1.10508 1.06219 1.73886 1.16899 0.86968 0.82043 0.78062 1.90924 1.12118 1.86568 1.49561 1.19203 0.81191 0.96932 1.11416 1.25834 1.05855 0.93251 1.02644 1.84580 0.91696 1.02453 1.77495 1.24578 1.00548 0.88745 1.18505 1.21846 0.89770 0.94318 1.07491 1.70188 1.25622 1.02981 1.16859 1.25346 0.78903 0.97589 1.07333 1.44233 1.05941 1.07752 1.50061 0.93342 0.77939 0.95631 0.95605 0.90457 0.90552 0.76819 0.77829 0.79833 0.76860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -17.94 5.60 -59.91 -0.34 -18.28 16 10 C 0.14 2.66 6.37 -4.04 -0.03 2.64 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 12 N -0.71 -9.41 5.53 -61.74 -0.34 -9.75 16 13 C 0.58 7.90 7.74 -13.03 -0.10 7.80 16 14 O -0.52 -8.51 16.60 5.14 0.09 -8.42 16 15 C 0.03 0.29 6.70 -83.21 -0.56 -0.26 16 16 C -0.14 -1.21 10.63 29.07 0.31 -0.90 16 17 S 0.18 1.33 23.33 -107.50 -2.51 -1.18 16 18 C -0.10 -1.00 7.81 -16.44 -0.13 -1.13 16 19 C 0.02 0.24 11.93 -17.42 -0.21 0.03 16 20 N -0.44 -5.21 11.21 -13.83 -0.16 -5.36 16 21 C 0.19 2.06 11.90 -88.30 -1.05 1.01 16 22 N -0.40 -4.38 3.20 -60.40 -0.19 -4.57 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 24 H 0.39 10.06 7.67 -40.82 -0.31 9.75 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.40 4.35 4.90 -40.82 -0.20 4.15 16 30 H 0.20 1.47 7.94 -52.49 -0.42 1.05 16 31 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.22 1.81 6.10 -52.49 -0.32 1.49 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -33.01 297.13 -8.21 -41.22 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -2.91 Total: 8.31 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.03 Total: 3.62 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.30 Total: -65.01 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.51 Total: -1.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.01 -8.21 -41.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134625965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.381 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds