Wall clock time and date at job start Tue Mar 31 2020 01:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00366 * 2 1 4 4 H 1.48499 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46824 * 300.00297 * 3 2 1 6 6 H 1.48500 * 109.47169 * 60.00286 * 3 2 1 7 7 C 1.38814 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00100 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99794 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46678 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46678 * 179.97438 * 11 10 9 13 13 C 1.34785 * 119.99911 * 180.02562 * 12 11 10 14 14 O 1.21758 * 119.99823 * 4.93565 * 13 12 11 15 15 C 1.46259 * 119.99806 * 184.94604 * 13 12 11 16 16 C 1.33483 * 122.20224 * 185.66708 * 15 13 12 17 17 S 1.75726 * 109.85289 * 180.02562 * 16 15 13 18 18 C 1.75945 * 91.05571 * 359.97438 * 17 16 15 19 19 C 1.36282 * 142.80087 * 179.97438 * 18 17 16 20 20 N 1.33747 * 107.81920 * 180.02562 * 19 18 17 21 21 C 1.30349 * 109.46003 * 0.02562 * 20 19 18 22 22 N 1.35929 * 109.81930 * 0.02562 * 18 17 16 23 23 H 0.96999 * 119.99810 * 359.97438 * 1 2 3 24 24 H 0.96994 * 119.99833 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.46745 * 59.99942 * 10 9 7 26 26 H 1.08997 * 109.47127 * 299.99683 * 10 9 7 27 27 H 1.08998 * 109.47334 * 60.00604 * 11 10 9 28 28 H 1.08997 * 109.47329 * 299.99861 * 11 10 9 29 29 H 0.96994 * 120.00373 * 0.02562 * 12 11 10 30 30 H 1.07992 * 125.07644 * 0.03766 * 16 15 13 31 31 H 1.08004 * 126.09482 * 0.04339 * 19 18 17 32 32 H 1.08002 * 125.57611 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 7 1.7962 -6.0884 -0.0025 13 6 1.1223 -7.2557 -0.0026 14 8 -0.0920 -7.2575 -0.0920 15 6 1.8496 -8.5200 0.1048 16 6 1.2400 -9.7027 -0.0018 17 16 2.4141 -10.9977 0.1779 18 6 3.7145 -9.8326 0.3949 19 6 5.0562 -9.7311 0.6115 20 7 5.3641 -8.4309 0.6701 21 6 4.2840 -7.7208 0.5018 22 7 3.2179 -8.5692 0.3243 23 1 -0.4850 0.8401 0.0004 24 1 0.3555 -2.3880 0.0002 25 1 2.6853 -3.7149 0.8878 26 1 2.6839 -3.7142 -0.8922 27 1 0.4361 -4.7618 -0.8900 28 1 0.4381 -4.7621 0.8899 29 1 2.7661 -6.0885 -0.0036 30 1 0.1830 -9.8428 -0.1732 31 1 5.7477 -10.5540 0.7167 32 1 4.2350 -6.6419 0.5020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134625965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:50 Heat of formation + Delta-G solvation = 59.368498 kcal Electronic energy + Delta-G solvation = -18543.914127 eV Core-core repulsion = 15439.512240 eV Total energy + Delta-G solvation = -3104.401887 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.89989 -41.03814 -37.70893 -37.18667 -35.72824 -33.25783 -31.59762 -30.84206 -29.62187 -26.50265 -25.08828 -23.72403 -23.01584 -22.76341 -21.57904 -19.91774 -19.34936 -17.87522 -17.48985 -17.28490 -16.62265 -16.58937 -16.34609 -15.97390 -15.41922 -15.30895 -15.10642 -14.98102 -14.62279 -14.35653 -13.31462 -13.07039 -13.03715 -12.72765 -12.62860 -12.55395 -12.06408 -11.90745 -11.58432 -11.54442 -11.35220 -11.03254 -10.64291 -10.39789 -9.08913 -8.55515 -7.98583 -5.30004 -0.60273 -0.03969 0.33708 0.54470 1.25722 1.48860 1.49552 1.59738 1.68496 1.80103 1.92573 2.55845 3.08575 3.36207 3.40569 3.67312 3.86880 3.96362 4.11099 4.14106 4.23667 4.38745 4.50506 4.65545 4.85662 5.05377 5.09942 5.24756 5.47986 5.71504 6.12046 6.22357 6.62424 6.73058 7.29264 7.99451 8.22550 9.25063 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.003284 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.578516 B = 8523.193986 C = 9355.801907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.083 0.917 9 N -0.745 5.745 10 C 0.145 3.855 11 C 0.126 3.874 12 N -0.707 5.707 13 C 0.581 3.419 14 O -0.551 6.551 15 C -0.005 4.005 16 C -0.121 4.121 17 S 0.251 5.749 18 C -0.120 4.120 19 C 0.017 3.983 20 N -0.467 5.467 21 C 0.175 3.825 22 N -0.400 5.400 23 H 0.253 0.747 24 H 0.375 0.625 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.406 0.594 30 H 0.221 0.779 31 H 0.210 0.790 32 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 -25.786 0.327 26.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.101 0.899 9 N -0.389 5.389 10 C 0.018 3.982 11 C 0.002 3.998 12 N -0.361 5.361 13 C 0.366 3.634 14 O -0.429 6.429 15 C -0.118 4.118 16 C -0.262 4.262 17 S 0.512 5.488 18 C -0.345 4.345 19 C -0.141 4.141 20 N -0.182 5.182 21 C -0.107 4.107 22 N -0.081 5.081 23 H 0.061 0.939 24 H 0.207 0.793 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.245 0.755 30 H 0.238 0.762 31 H 0.226 0.774 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 7.180 -26.719 0.370 27.669 hybrid contribution -0.489 2.485 -0.098 2.535 sum 6.691 -24.233 0.272 25.142 Atomic orbital electron populations 1.69830 1.06762 1.26251 1.59079 1.25639 0.96422 1.01359 1.03261 0.85025 0.78356 0.79430 0.76619 1.18668 1.22065 1.22043 1.19673 0.91744 0.84799 1.41757 0.89912 1.42377 1.05798 1.00898 1.89800 1.20872 0.93643 0.84182 0.99456 1.21332 0.94848 0.81343 1.02286 1.45886 1.10974 1.05284 1.73941 1.17158 0.86661 0.82687 0.76925 1.90901 1.13576 1.87159 1.51297 1.18851 0.81462 0.96265 1.15270 1.26274 1.07136 0.93476 0.99270 1.84417 0.89069 0.99878 1.75423 1.25050 1.01405 0.89347 1.18658 1.22333 0.90385 0.94409 1.06999 1.70172 1.26272 1.04042 1.17685 1.25630 0.78945 0.98274 1.07801 1.44231 1.05751 1.08190 1.49933 0.93865 0.79260 0.94269 0.94446 0.91648 0.91560 0.75463 0.76203 0.77367 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.25 -13.50 9.99 84.03 0.84 -12.66 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -36.85 5.60 -343.45 -1.92 -38.77 16 10 C 0.15 5.33 6.37 86.38 0.55 5.88 16 11 C 0.13 4.05 5.79 86.38 0.50 4.55 16 12 N -0.71 -18.28 5.53 -467.45 -2.59 -20.87 16 13 C 0.58 15.59 7.74 86.33 0.67 16.26 16 14 O -0.55 -18.13 16.60 -4.53 -0.08 -18.21 16 15 C 0.00 -0.10 6.70 39.07 0.26 0.16 16 16 C -0.12 -1.88 10.63 66.74 0.71 -1.17 16 17 S 0.25 2.96 23.33 -56.49 -1.32 1.64 16 18 C -0.12 -2.16 7.81 83.60 0.65 -1.51 16 19 C 0.02 0.31 11.93 83.94 1.00 1.31 16 20 N -0.47 -10.51 11.21 -197.67 -2.22 -12.72 16 21 C 0.18 3.64 11.90 179.54 2.14 5.77 16 22 N -0.40 -8.23 3.20 -345.00 -1.10 -9.34 16 23 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 24 H 0.38 19.99 7.67 -92.71 -0.71 19.27 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.41 8.59 4.90 -92.71 -0.45 8.14 16 30 H 0.22 2.61 7.94 -2.91 -0.02 2.59 16 31 H 0.21 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.23 3.66 6.10 -2.91 -0.02 3.64 16 Total: -1.00 -70.58 297.13 0.89 -69.68 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.02 Total: 25.00 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 7.79 Total: 14.86 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -7.55 Total: -140.29 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.08 Total: -18.21 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.32 Total: 1.64 kcal Total: -70.58 0.89 -69.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134625965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.050 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds