Wall clock time and date at job start Tue Mar 31 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48504 * 109.47372 * 275.14504 * 3 2 1 5 5 H 1.48505 * 109.47157 * 35.13961 * 3 2 1 6 6 H 1.48497 * 109.47308 * 155.14394 * 3 2 1 7 7 C 1.39013 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99865 * 339.04098 * 7 2 1 9 9 N 1.36913 * 120.00388 * 159.04190 * 7 2 1 10 10 C 1.34776 * 119.99742 * 315.11203 * 9 7 2 11 11 O 1.21632 * 120.00305 * 4.95724 * 10 9 7 12 12 C 1.47334 * 119.99709 * 185.23308 * 10 9 7 13 13 C 1.39817 * 120.20628 * 311.01185 * 12 10 9 14 14 C 1.37714 * 119.94166 * 179.71909 * 13 12 10 15 15 C 1.38637 * 120.36571 * 0.55960 * 14 13 12 16 16 C 1.38051 * 120.41901 * 359.71564 * 15 14 13 17 17 Cl 1.73602 * 119.97527 * 179.97438 * 16 15 14 18 18 C 1.39041 * 120.04851 * 0.02562 * 16 15 14 19 19 N 1.38956 * 120.18009 * 179.97438 * 18 16 15 20 20 C 1.46500 * 119.99859 * 135.10778 * 9 7 2 21 21 C 1.52997 * 117.49892 * 3.82034 * 20 9 7 22 22 C 1.52998 * 117.49918 * 295.19646 * 20 9 7 23 23 H 0.97005 * 119.99980 * 359.97438 * 1 2 3 24 24 H 1.08009 * 120.02801 * 359.97287 * 13 12 10 25 25 H 1.08006 * 119.82032 * 180.25262 * 14 13 12 26 26 H 1.07999 * 119.79234 * 179.74050 * 15 14 13 27 27 H 0.96999 * 119.99414 * 184.41996 * 19 18 16 28 28 H 0.96991 * 120.00092 * 4.42411 * 19 18 16 29 29 H 1.08999 * 115.54485 * 149.52994 * 20 9 7 30 30 H 1.08995 * 117.50332 * 359.97438 * 21 20 9 31 31 H 1.09007 * 117.49564 * 145.01897 * 21 20 9 32 32 H 1.09002 * 117.50293 * 214.97672 * 22 20 9 33 33 H 1.09000 * 117.50354 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.3867 2.1093 -1.3944 5 1 1.5038 2.6189 0.8059 6 1 3.5955 1.4113 0.5885 7 6 2.0090 -1.2039 -0.0005 8 1 1.5225 -2.1084 0.3336 9 7 3.3101 -1.2429 -0.4246 10 6 3.6717 -0.5958 -1.5502 11 8 2.8640 0.0964 -2.1400 12 6 5.0438 -0.7317 -2.0696 13 6 6.1388 -0.5592 -1.2175 14 6 7.4188 -0.6931 -1.7075 15 6 7.6297 -0.9873 -3.0458 16 6 6.5596 -1.1551 -3.9017 17 17 6.8370 -1.5225 -5.5756 18 6 5.2598 -1.0290 -3.4243 19 7 4.1807 -1.1968 -4.2835 20 6 4.3094 -1.9881 0.3451 21 6 3.8204 -2.7746 1.5629 22 6 4.6294 -1.4904 1.7560 23 1 -0.4850 0.8401 0.0004 24 1 5.9808 -0.3251 -0.1750 25 1 8.2632 -0.5635 -1.0467 26 1 8.6376 -1.0861 -3.4211 27 1 3.2777 -1.0454 -3.9632 28 1 4.3304 -1.4654 -5.2034 29 1 5.1270 -2.4154 -0.2354 30 1 2.7554 -2.7373 1.7918 31 1 4.3164 -3.7198 1.7839 32 1 5.6574 -1.5907 2.1041 33 1 4.0962 -0.6088 2.1118 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136422436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:07 Heat of formation + Delta-G solvation = 6.985287 kcal Electronic energy + Delta-G solvation = -20092.267848 eV Core-core repulsion = 16951.257997 eV Total energy + Delta-G solvation = -3141.009851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51999 -39.64100 -38.07331 -37.33068 -35.56729 -34.91812 -33.51282 -31.90361 -29.68716 -27.22055 -24.75421 -23.54997 -22.99258 -22.73239 -21.23251 -19.32970 -18.20889 -18.19181 -17.82587 -17.25979 -16.54739 -15.79539 -15.66539 -15.23957 -15.14345 -15.03143 -14.78814 -14.67548 -14.44820 -13.56262 -13.10213 -13.00166 -12.59064 -12.54146 -12.44942 -12.18554 -12.05475 -11.93653 -11.73200 -11.58279 -11.21062 -10.82356 -10.48075 -9.73661 -9.39596 -8.58399 -8.47567 -6.20964 0.03576 0.50607 1.14915 1.20021 1.31704 1.45678 1.90953 2.37610 2.56805 2.78204 2.85151 2.94145 3.23196 3.69442 4.05046 4.06871 4.12910 4.20588 4.33244 4.43894 4.55760 4.73975 4.88951 4.98464 5.06447 5.24083 5.32080 5.46730 5.49870 5.66202 5.80641 5.87037 6.31011 6.67565 6.76119 6.85721 7.29496 7.83062 8.61064 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.006987 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.886399 B = 4006.467985 C = 4599.078841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.952 3.048 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.260 1.260 7 C -0.340 4.340 8 H 0.073 0.927 9 N -0.438 5.438 10 C 0.501 3.499 11 O -0.590 6.590 12 C -0.213 4.213 13 C -0.045 4.045 14 C -0.162 4.162 15 C -0.038 4.038 16 C -0.133 4.133 17 Cl -0.066 7.066 18 C 0.256 3.744 19 N -0.858 5.858 20 C 0.041 3.959 21 C -0.169 4.169 22 C -0.182 4.182 23 H 0.273 0.727 24 H 0.135 0.865 25 H 0.171 0.829 26 H 0.167 0.833 27 H 0.404 0.596 28 H 0.406 0.594 29 H 0.141 0.859 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.292 -4.366 -3.202 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.151 4.151 3 Si 0.782 3.218 4 H -0.211 1.211 5 H -0.232 1.232 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.091 0.909 9 N -0.156 5.156 10 C 0.294 3.706 11 O -0.476 6.476 12 C -0.221 4.221 13 C -0.064 4.064 14 C -0.182 4.182 15 C -0.057 4.057 16 C -0.165 4.165 17 Cl -0.037 7.037 18 C 0.144 3.856 19 N -0.397 5.397 20 C -0.063 4.063 21 C -0.206 4.206 22 C -0.221 4.221 23 H 0.082 0.918 24 H 0.153 0.847 25 H 0.189 0.811 26 H 0.184 0.816 27 H 0.235 0.765 28 H 0.237 0.763 29 H 0.159 0.841 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.700 -4.008 -3.616 19.463 hybrid contribution -1.149 0.829 -0.441 1.484 sum 17.551 -3.178 -4.057 18.292 Atomic orbital electron populations 1.69824 1.07968 1.28678 1.47525 1.25882 0.95257 1.01640 0.92352 0.85698 0.79328 0.80052 0.76746 1.21058 1.23171 1.18399 1.18592 0.86444 0.94896 1.46795 0.90924 1.43138 1.07298 1.45434 1.19738 1.18636 0.88060 0.83037 0.80913 1.90582 1.54460 1.42165 1.60380 1.19406 0.93681 1.15828 0.93216 1.21481 0.91770 0.93921 0.99275 1.21121 0.96526 1.05151 0.95401 1.21319 0.98310 0.93625 0.92469 1.20341 0.92292 1.16813 0.87023 1.98319 1.95976 1.93610 1.15801 1.17503 0.87690 0.91768 0.88609 1.42718 1.07570 1.75847 1.13565 1.22234 0.94999 1.01293 0.87799 1.23194 1.00686 0.96430 1.00311 1.23378 1.02116 0.97787 0.98788 0.91781 0.84694 0.81126 0.81596 0.76533 0.76336 0.84122 0.90446 0.85427 0.84581 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.54 13.96 21.67 0.30 -56.24 16 2 C 0.05 3.23 4.80 84.95 0.41 3.63 16 3 Si 0.95 51.06 25.02 68.60 1.72 52.77 16 4 H -0.28 -16.40 6.36 99.48 0.63 -15.77 16 5 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 6 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.34 -19.21 8.53 84.09 0.72 -18.49 16 8 H 0.07 4.37 7.15 -2.91 -0.02 4.34 16 9 N -0.44 -20.76 2.43 -616.92 -1.50 -22.26 16 10 C 0.50 23.96 5.17 86.64 0.45 24.41 16 11 O -0.59 -32.98 10.97 -4.13 -0.05 -33.02 16 12 C -0.21 -7.95 5.04 -19.98 -0.10 -8.06 16 13 C -0.05 -1.30 7.65 22.53 0.17 -1.13 16 14 C -0.16 -3.32 10.02 22.24 0.22 -3.10 16 15 C -0.04 -0.78 9.81 22.32 0.22 -0.56 16 16 C -0.13 -3.52 6.33 22.42 0.14 -3.38 16 17 Cl -0.07 -1.49 27.59 -2.72 -0.08 -1.57 16 18 C 0.26 8.63 6.74 38.72 0.26 8.89 16 19 N -0.86 -29.26 8.89 -50.83 -0.45 -29.71 16 20 C 0.04 1.45 4.52 44.99 0.20 1.65 16 21 C -0.17 -5.39 9.81 30.59 0.30 -5.09 16 22 C -0.18 -5.55 9.68 30.59 0.30 -5.25 16 23 H 0.27 16.20 8.31 -92.70 -0.77 15.43 16 24 H 0.14 3.81 6.33 -2.91 -0.02 3.79 16 25 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 26 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 27 H 0.40 16.20 6.59 -92.71 -0.61 15.59 16 28 H 0.41 11.44 7.51 -92.72 -0.70 10.74 16 29 H 0.14 4.24 6.29 -2.39 -0.02 4.22 16 30 H 0.08 3.02 6.58 -2.39 -0.02 3.01 16 31 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 32 H 0.14 2.85 8.14 -2.39 -0.02 2.84 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -72.76 286.85 3.03 -69.73 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.21 Total: 26.77 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 3.29 Total: -6.48 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -1.65 Total: -108.20 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.05 Total: -33.02 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 1.72 Total: 52.77 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -72.76 3.03 -69.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136422436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.713 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds