Wall clock time and date at job start Tue Mar 31 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99771 * 2 1 4 4 C 1.50699 * 109.47140 * 293.95489 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46898 * 111.00161 * 123.95199 * 2 1 3 13 13 C 1.50700 * 109.47068 * 66.05192 * 12 2 1 14 14 C 1.33637 * 122.75499 * 94.72783 * 13 12 2 15 15 S 1.76198 * 107.92758 * 179.97438 * 14 13 12 16 16 C 1.70974 * 90.28153 * 0.27518 * 15 14 13 17 17 C 1.50698 * 124.91497 * 179.83877 * 16 15 14 18 18 F 1.39901 * 109.47258 * 270.00115 * 17 16 15 19 19 F 1.39893 * 109.47137 * 30.00035 * 17 16 15 20 20 F 1.39902 * 109.47134 * 150.00488 * 17 16 15 21 21 N 1.29024 * 110.16737 * 359.84222 * 16 15 14 22 22 H 1.08997 * 109.47293 * 60.00221 * 1 2 3 23 23 H 1.09000 * 109.46769 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47106 * 299.99134 * 1 2 3 25 25 H 1.09004 * 109.47040 * 53.95427 * 3 2 1 26 26 H 1.09000 * 109.47033 * 173.95379 * 3 2 1 27 27 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47244 * 186.04995 * 12 2 1 29 29 H 1.08994 * 109.47665 * 306.05094 * 12 2 1 30 30 H 1.08002 * 126.03405 * 0.04564 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0275 3.3492 -1.5288 7 7 1.7142 3.9390 -2.6617 8 14 3.0007 4.2759 -0.2313 9 1 4.4531 4.0625 -0.4556 10 1 2.6933 5.7259 -0.3236 11 1 2.6293 3.7760 1.1169 12 6 1.9954 -0.7659 1.1376 13 6 1.6371 -2.2204 0.9728 14 6 2.4637 -3.1101 0.4152 15 16 1.6583 -4.6772 0.4217 16 6 0.2868 -3.9787 1.1661 17 6 -0.9665 -4.7271 1.5405 18 9 -1.8654 -4.6968 0.4689 19 9 -0.6444 -6.0548 1.8415 20 9 -1.5532 -4.1245 2.6585 21 7 0.4801 -2.7180 1.3610 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.5610 1.9274 0.8310 26 1 3.0797 1.3445 0.1082 27 1 1.9894 4.8549 -2.8240 28 1 3.0798 -0.6610 1.1756 29 1 1.5611 -0.3873 2.0628 30 1 3.4516 -2.9050 0.0298 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141869884.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:05 Heat of formation + Delta-G solvation = -87.709147 kcal Electronic energy + Delta-G solvation = -19437.982764 eV Core-core repulsion = 15753.053620 eV Total energy + Delta-G solvation = -3684.929144 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.42811 -47.99661 -47.86534 -40.27489 -36.54267 -32.69786 -31.72092 -28.28263 -27.83968 -26.87566 -24.47298 -22.78114 -20.60332 -20.17353 -19.08793 -18.81826 -18.22325 -17.26069 -16.79406 -15.44873 -15.01979 -14.80370 -14.72186 -14.37767 -14.33908 -14.20833 -14.04845 -14.03489 -13.80827 -13.57960 -12.86244 -12.65409 -12.37676 -11.89894 -11.61390 -11.19640 -11.00868 -10.59190 -10.49925 -10.06249 -9.96087 -9.75373 -9.34923 -9.17801 -8.60367 -7.49430 -6.08287 -4.06323 0.17349 0.80187 1.30126 2.15325 2.41583 3.20054 3.25381 3.33554 3.34585 3.85071 4.03782 4.38527 4.39632 4.90221 5.02517 5.11091 5.24330 5.58000 5.79912 5.94876 6.14423 6.30361 6.67981 6.82376 6.92742 7.31286 7.50363 7.79912 7.93073 8.60262 9.00133 9.52533 11.04760 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.004028 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.098277 B = 6948.999632 C = 7191.203956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.527 5.527 3 C 0.163 3.837 4 C -0.510 4.510 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.121 3.879 13 C 0.083 3.917 14 C -0.205 4.205 15 S 0.204 5.796 16 C -0.088 4.088 17 C 0.557 3.443 18 F -0.162 7.162 19 F -0.168 7.168 20 F -0.157 7.157 21 N -0.403 5.403 22 H 0.078 0.922 23 H 0.051 0.949 24 H 0.016 0.984 25 H -0.008 1.008 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 -19.498 9.270 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.251 5.251 3 C 0.037 3.963 4 C -0.549 4.549 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.010 4.010 13 C -0.050 4.050 14 C -0.346 4.346 15 S 0.457 5.543 16 C -0.365 4.365 17 C 0.498 3.502 18 F -0.144 7.144 19 F -0.149 7.149 20 F -0.138 7.138 21 N -0.119 5.119 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.010 0.990 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.277 -20.281 8.671 22.059 hybrid contribution 0.239 1.835 1.427 2.337 sum -0.038 -18.446 10.097 21.029 Atomic orbital electron populations 1.22258 0.87504 1.00091 1.01130 1.62019 1.08222 1.16559 1.38310 1.20220 0.94916 0.83539 0.97662 1.20994 1.35821 0.97282 1.00757 0.90111 1.24889 0.95792 0.97284 0.95286 1.69890 1.46729 1.13317 1.23872 0.86873 0.80828 0.79416 0.82706 1.20102 1.21146 1.19241 1.20699 1.00476 0.85351 0.94520 1.20367 0.87362 0.98705 0.98540 1.27338 1.06782 0.94152 1.06293 1.83872 1.06504 1.10646 1.53312 1.26586 1.01424 0.96091 1.12414 1.16924 0.81548 0.76342 0.75356 1.93274 1.69121 1.96188 1.55781 1.93232 1.92659 1.35771 1.93230 1.93260 1.84976 1.83138 1.52445 1.65851 1.21188 1.08938 1.15911 0.90365 0.92992 0.96546 0.99041 0.95650 0.92602 0.89078 0.93417 0.78981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.15 60.06 0.55 1.33 16 2 N -0.53 -10.90 4.74 -245.83 -1.17 -12.06 16 3 C 0.16 3.84 3.79 -4.97 -0.02 3.82 16 4 C -0.51 -14.31 9.07 -34.44 -0.31 -14.62 16 5 H 0.08 2.48 7.35 -52.48 -0.39 2.10 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 8 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.12 1.99 5.40 -4.98 -0.03 1.96 16 13 C 0.08 1.23 5.58 -84.22 -0.47 0.76 16 14 C -0.21 -2.41 11.12 29.12 0.32 -2.09 16 15 S 0.20 2.08 22.85 -107.50 -2.46 -0.38 16 16 C -0.09 -1.15 6.74 -13.46 -0.09 -1.24 16 17 C 0.56 6.72 3.55 36.00 0.13 6.85 16 18 F -0.16 -2.03 17.30 2.25 0.04 -1.99 16 19 F -0.17 -1.75 16.99 2.25 0.04 -1.72 16 20 F -0.16 -2.05 17.22 2.25 0.04 -2.01 16 21 N -0.40 -6.19 9.09 -8.06 -0.07 -6.26 16 22 H 0.08 1.74 6.86 -51.93 -0.36 1.38 16 23 H 0.05 0.99 6.21 -51.93 -0.32 0.67 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H -0.01 -0.19 7.18 -51.93 -0.37 -0.57 16 26 H 0.03 0.58 7.36 -51.93 -0.38 0.20 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.31 7.89 -51.93 -0.41 0.91 16 29 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 285.73 15.07 4.31 4.31 Total: -1.00 -30.63 285.73 -5.85 -36.48 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -2.66 Total: -4.88 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.01 Total: -1.35 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.47 Total: -44.85 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.12 Total: -5.72 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.46 Total: -0.38 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.63 -5.85 -36.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141869884.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.228 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds