Wall clock time and date at job start Tue Mar 31 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47365 * 8.12549 * 3 2 1 5 5 C 1.36913 * 119.99882 * 270.00398 * 4 3 2 6 6 H 1.08002 * 120.00101 * 21.74276 * 5 4 3 7 7 C 1.39014 * 119.99729 * 201.75036 * 5 4 3 8 8 N 1.31384 * 120.00179 * 9.46646 * 7 5 4 9 9 Si 1.86800 * 120.00007 * 189.46127 * 7 5 4 10 10 H 1.48500 * 109.46796 * 64.99551 * 9 7 5 11 11 H 1.48496 * 109.47472 * 184.99852 * 9 7 5 12 12 H 1.48497 * 109.47033 * 305.00187 * 9 7 5 13 13 C 1.34779 * 120.00150 * 89.99576 * 4 3 2 14 14 O 1.21636 * 120.00341 * 242.34215 * 13 4 3 15 15 C 1.47329 * 119.99507 * 62.34124 * 13 4 3 16 16 C 1.39868 * 120.19194 * 21.80896 * 15 13 4 17 17 C 1.37896 * 119.93240 * 180.02562 * 16 15 13 18 18 F 1.35099 * 119.83820 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.31896 * 0.02562 * 17 16 15 20 20 C 1.38116 * 120.39156 * 359.71732 * 19 17 16 21 21 F 1.35096 * 119.97622 * 180.28466 * 20 19 17 22 22 C 1.39118 * 120.05696 * 0.56241 * 20 19 17 23 23 N 1.39147 * 120.16118 * 179.72292 * 22 20 19 24 24 H 4.40642 * 5.51328 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47487 * 248.12441 * 3 2 1 26 26 H 1.09004 * 109.47108 * 128.12165 * 3 2 1 27 27 H 0.97001 * 120.00449 * 184.91788 * 8 7 5 28 28 H 1.08001 * 120.03418 * 359.97438 * 16 15 13 29 29 H 1.08004 * 119.80114 * 179.97438 * 19 17 16 30 30 H 0.97000 * 120.00059 * 190.33697 * 23 22 20 31 31 H 0.97006 * 120.00128 * 10.32540 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3665 -0.1952 5 6 3.3635 -2.1729 0.8874 6 1 2.8759 -1.9647 1.8283 7 6 4.2233 -3.2595 0.7755 8 7 4.9579 -3.4076 -0.3037 9 14 4.3344 -4.5091 2.1595 10 1 3.0340 -5.2130 2.2964 11 1 5.4012 -5.4952 1.8518 12 1 4.6562 -3.8123 3.4308 13 6 3.3599 -1.8304 -1.4405 14 8 2.7232 -2.7778 -1.8608 15 6 4.3768 -1.1899 -2.2927 16 6 5.4049 -0.4371 -1.7161 17 6 6.3536 0.1605 -2.5188 18 9 7.3456 0.8877 -1.9599 19 6 6.2937 0.0193 -3.8985 20 6 5.2873 -0.7255 -4.4817 21 9 5.2403 -0.8621 -5.8249 22 6 4.3185 -1.3304 -3.6874 23 7 3.3003 -2.0765 -4.2730 24 1 -1.0497 -0.0004 -0.0002 25 1 3.0093 0.3837 0.9536 26 1 3.0091 0.6353 -0.8085 27 1 5.5040 -4.2017 -0.4136 28 1 5.4552 -0.3232 -0.6433 29 1 7.0409 0.4913 -4.5193 30 1 2.5460 -2.3707 -3.7389 31 1 3.3448 -2.3022 -5.2154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155223093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:59 Heat of formation + Delta-G solvation = -17.792913 kcal Electronic energy + Delta-G solvation = -21801.452397 eV Core-core repulsion = 18107.571402 eV Total energy + Delta-G solvation = -3693.880994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.53587 -48.33241 -39.46243 -37.36964 -35.17073 -33.71926 -32.74375 -31.29578 -30.25852 -27.83010 -26.55674 -25.00713 -23.13665 -21.77183 -20.05172 -18.07502 -17.86863 -17.22297 -16.66852 -16.45301 -15.54115 -15.44464 -15.37765 -14.82038 -14.77549 -14.65520 -14.20306 -13.99668 -13.87483 -13.34603 -12.65373 -12.34740 -12.26829 -11.88876 -11.47061 -11.42045 -11.25052 -11.02320 -10.66520 -10.38235 -10.01846 -9.93683 -9.64330 -9.22664 -8.67512 -8.40915 -7.62073 -7.04332 -6.28160 -3.77462 1.29023 1.71658 3.17362 3.22424 3.30140 3.33486 3.40099 3.51598 4.13873 4.25702 4.33523 4.44772 4.77905 4.94685 5.02984 5.15497 5.26528 5.43718 5.70309 5.96491 6.04271 6.19782 6.32309 6.41258 6.49872 6.54701 6.70680 7.21322 7.44993 7.81114 7.94497 8.18493 8.21578 8.86150 9.09296 9.34071 9.80641 10.83628 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.007315 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.004607 B = 3826.856398 C = 4268.521333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C 0.227 3.773 4 N -0.538 5.538 5 C -0.293 4.293 6 H 0.086 0.914 7 C 0.027 3.973 8 N -0.878 5.878 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.632 3.368 14 O -0.524 6.524 15 C -0.124 4.124 16 C -0.048 4.048 17 C 0.042 3.958 18 F -0.145 7.145 19 C -0.133 4.133 20 C 0.017 3.983 21 F -0.144 7.144 22 C 0.223 3.777 23 N -0.853 5.853 24 H 0.209 0.791 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.273 0.727 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.416 0.584 31 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 7.223 -4.764 8.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.177 4.177 3 C 0.103 3.897 4 N -0.265 5.265 5 C -0.420 4.420 6 H 0.103 0.897 7 C -0.176 4.176 8 N -0.519 5.519 9 Si 0.753 3.247 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.425 3.575 14 O -0.400 6.400 15 C -0.133 4.133 16 C -0.068 4.068 17 C 0.020 3.980 18 F -0.123 7.123 19 C -0.154 4.154 20 C -0.007 4.007 21 F -0.123 7.123 22 C 0.112 3.888 23 N -0.397 5.397 24 H 0.226 0.774 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.254 0.746 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.362 6.581 -5.011 8.280 hybrid contribution 0.035 -0.957 0.318 1.009 sum -0.327 5.624 -4.694 7.333 Atomic orbital electron populations 1.24715 0.95762 1.01547 1.03077 1.24487 0.95714 0.98973 0.98577 1.18090 0.83003 0.86377 1.02251 1.42412 1.69656 1.10180 1.04224 1.19256 1.22717 1.10053 0.89938 0.89662 1.25137 0.94434 0.99727 0.98336 1.69245 1.27008 1.27433 1.28204 0.86005 0.77733 0.80420 0.80519 1.20431 1.21124 1.20098 1.16908 0.79808 0.80841 0.79930 1.90353 1.47654 1.29987 1.71980 1.19764 1.00643 1.02757 0.90174 1.21188 0.91594 0.92917 1.01095 1.16888 0.90325 1.00486 0.90260 1.91448 1.59640 1.75746 1.85514 1.20683 0.99339 1.01284 0.94086 1.16534 1.00211 1.07266 0.76694 1.91407 1.96504 1.95082 1.29279 1.17822 0.88548 0.91221 0.91249 1.42732 1.24440 1.59209 1.13293 0.77441 0.88995 0.90445 0.91556 0.83360 0.84340 0.74615 0.77938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.95 19.25 29.55 0.57 -3.38 16 2 C -0.18 -3.34 13.67 -37.12 -0.51 -3.84 16 3 C 0.23 4.30 5.79 -6.83 -0.04 4.26 16 4 N -0.54 -12.60 1.94 -119.19 -0.23 -12.83 16 5 C -0.29 -7.47 9.62 -14.99 -0.14 -7.61 16 6 H 0.09 2.10 7.85 -52.49 -0.41 1.68 16 7 C 0.03 0.70 5.24 -17.46 -0.09 0.61 16 8 N -0.88 -23.81 10.91 55.50 0.61 -23.21 16 9 Si 0.93 20.85 29.57 -169.99 -5.03 15.82 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.63 15.26 3.72 -12.56 -0.05 15.21 16 14 O -0.52 -13.95 14.52 5.25 0.08 -13.87 16 15 C -0.12 -2.62 5.16 -104.82 -0.54 -3.16 16 16 C -0.05 -0.93 8.92 -39.10 -0.35 -1.28 16 17 C 0.04 0.73 7.28 -39.49 -0.29 0.45 16 18 F -0.14 -2.47 17.26 2.25 0.04 -2.43 16 19 C -0.13 -2.15 9.98 -39.41 -0.39 -2.55 16 20 C 0.02 0.30 7.30 -39.30 -0.29 0.01 16 21 F -0.14 -2.31 16.66 2.25 0.04 -2.27 16 22 C 0.22 4.27 6.76 -83.44 -0.56 3.71 16 23 N -0.85 -15.14 8.74 32.62 0.29 -14.85 16 24 H 0.21 2.66 7.80 -54.11 -0.42 2.24 16 25 H 0.09 1.56 8.04 -51.93 -0.42 1.15 16 26 H 0.08 1.30 7.30 -51.93 -0.38 0.92 16 27 H 0.27 7.32 8.32 -40.82 -0.34 6.98 16 28 H 0.15 3.00 7.73 -52.49 -0.41 2.59 16 29 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.42 8.05 5.97 -40.82 -0.24 7.81 16 31 H 0.39 5.83 8.36 -40.82 -0.34 5.49 16 LS Contribution 293.02 15.07 4.42 4.42 Total: -1.00 -29.48 293.02 -4.66 -34.14 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -2.18 Total: 12.66 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -2.68 Total: 2.42 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.66 Total: -50.89 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.08 Total: -4.70 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.48 -4.66 -34.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155223093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.349 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds