Wall clock time and date at job start Tue Mar 31 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21528 * 120.00224 * 2 1 4 4 C 1.40306 * 119.99736 * 180.02562 * 2 1 3 5 5 C 1.35511 * 119.99924 * 185.92020 * 4 2 1 6 6 C 1.50698 * 120.00379 * 180.88856 * 5 4 2 7 7 N 1.36490 * 119.99827 * 0.87788 * 5 4 2 8 8 C 1.38619 * 119.99536 * 117.91041 * 7 5 4 9 9 N 1.32744 * 119.43414 * 5.69418 * 8 7 5 10 10 C 1.31417 * 121.75497 * 179.97438 * 9 8 7 11 11 C 1.40842 * 120.38359 * 359.97438 * 10 9 8 12 12 C 1.41160 * 120.57221 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99955 * 330.69437 * 12 11 10 14 14 C 1.39907 * 120.00184 * 150.69966 * 12 11 10 15 15 N 1.30875 * 120.00038 * 353.70783 * 14 12 11 16 16 Si 1.86803 * 120.00032 * 173.70606 * 14 12 11 17 17 H 1.48501 * 109.46932 * 94.98099 * 16 14 12 18 18 H 1.48498 * 109.47065 * 214.98335 * 16 14 12 19 19 H 1.48498 * 109.46881 * 334.98560 * 16 14 12 20 20 C 1.41270 * 118.85774 * 0.02562 * 11 10 9 21 21 C 1.36706 * 118.39388 * 359.97438 * 20 11 10 22 22 Cl 1.73602 * 120.26310 * 179.97438 * 21 20 11 23 23 H 1.08996 * 109.47321 * 239.99602 * 1 2 3 24 24 H 1.08995 * 109.47035 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46987 * 119.99763 * 1 2 3 26 26 H 1.07994 * 120.00297 * 5.91752 * 4 2 1 27 27 H 1.09010 * 109.46510 * 275.00173 * 6 5 4 28 28 H 1.09000 * 109.46899 * 34.99153 * 6 5 4 29 29 H 1.08993 * 109.47433 * 155.00017 * 6 5 4 30 30 H 0.96990 * 120.00409 * 297.91259 * 7 5 4 31 31 H 1.07994 * 119.80775 * 180.26948 * 10 9 8 32 32 H 0.96996 * 119.99704 * 180.02562 * 15 14 12 33 33 H 1.08003 * 120.80035 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1147 1.0524 0.0000 4 6 2.2085 -1.2151 -0.0005 5 6 3.5582 -1.2183 0.1205 6 6 4.3135 -2.5222 0.0998 7 7 4.2335 -0.0406 0.2610 8 6 4.9675 0.2045 1.4111 9 7 5.0996 -0.7561 2.3177 10 6 5.7854 -0.5736 3.4237 11 6 6.4079 0.6635 3.6801 12 6 7.1460 0.8637 4.8666 13 1 6.8827 0.3234 5.7639 14 6 8.2184 1.7621 4.8801 15 7 8.6157 2.3238 3.7668 16 14 9.0833 2.1599 6.4874 17 1 10.2741 1.2855 6.6383 18 1 9.5110 3.5819 6.4806 19 1 8.1524 1.9283 7.6209 20 6 6.2808 1.7007 2.7293 21 6 5.5564 1.4582 1.5957 22 17 5.3684 2.6983 0.3955 23 1 -0.3634 -0.5139 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6728 -2.1478 -0.0974 27 1 4.3270 -2.9501 1.1023 28 1 3.8236 -3.2151 -0.5843 29 1 5.3360 -2.3446 -0.2333 30 1 4.1999 0.6248 -0.4439 31 1 5.8763 -1.3785 4.1380 32 1 9.3594 2.9463 3.7762 33 1 6.7448 2.6619 2.8942 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155892166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:12 Heat of formation + Delta-G solvation = 5.440073 kcal Electronic energy + Delta-G solvation = -19214.511798 eV Core-core repulsion = 16073.434942 eV Total energy + Delta-G solvation = -3141.076856 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69163 -38.57401 -36.22244 -35.56333 -33.98055 -31.82612 -30.63668 -30.20759 -28.80618 -27.32001 -25.14330 -22.52807 -21.57217 -20.47269 -18.59212 -17.52521 -17.07385 -16.06461 -15.43468 -15.22105 -14.51981 -14.40943 -14.21197 -13.69599 -13.29836 -12.91414 -12.83226 -12.57155 -12.33523 -11.97106 -11.86435 -11.83942 -11.73411 -11.51941 -11.21163 -11.02424 -10.81514 -10.41152 -10.07986 -9.77990 -9.43161 -8.96260 -8.57783 -8.33493 -8.19476 -6.97109 -6.79620 -4.47364 1.38158 2.41967 2.72781 3.01364 3.05223 3.08338 3.17211 3.39565 3.83505 4.02745 4.50435 4.74803 5.32568 5.40177 5.50201 5.60466 5.65652 5.77001 5.81360 5.90335 6.05573 6.19480 6.30852 6.46601 6.57049 6.79351 6.88905 7.00364 7.10511 7.57041 7.62799 8.07129 8.13918 8.22250 8.30835 8.56156 8.63436 9.34178 10.07311 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025188 B = 0.005023 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.371979 B = 5572.509234 C = 6027.010364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.374 3.626 3 O -0.477 6.477 4 C -0.345 4.345 5 C 0.281 3.719 6 C -0.133 4.133 7 N -0.663 5.663 8 C 0.269 3.731 9 N -0.493 5.493 10 C 0.016 3.984 11 C 0.045 3.955 12 C -0.447 4.447 13 H 0.084 0.916 14 C 0.069 3.931 15 N -0.803 5.803 16 Si 0.918 3.082 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.089 4.089 21 C -0.083 4.083 22 Cl -0.103 7.103 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.417 0.583 31 H 0.138 0.862 32 H 0.283 0.717 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 -4.946 -5.038 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.258 3.742 3 O -0.358 6.358 4 C -0.369 4.369 5 C 0.178 3.822 6 C -0.192 4.192 7 N -0.297 5.297 8 C 0.039 3.961 9 N -0.207 5.207 10 C -0.144 4.144 11 C 0.040 3.960 12 C -0.477 4.477 13 H 0.102 0.898 14 C -0.148 4.148 15 N -0.429 5.429 16 Si 0.742 3.258 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.116 4.116 21 C -0.115 4.115 22 Cl -0.075 7.075 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.146 0.854 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.259 0.741 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.876 -4.993 -5.297 10.014 hybrid contribution 0.728 1.220 0.426 1.483 sum -6.148 -3.773 -4.871 8.704 Atomic orbital electron populations 1.22189 0.96025 1.03731 1.03288 1.20542 0.91295 0.88990 0.73326 1.90601 1.71495 1.34999 1.38698 1.22084 0.93754 0.99769 1.21285 1.20330 0.90529 0.88164 0.83213 1.21270 1.00213 0.94023 1.03648 1.41110 1.51966 1.17760 1.18826 1.17285 0.99941 0.89613 0.89284 1.66693 1.19639 1.30847 1.03549 1.22430 1.01608 0.96269 0.94076 1.18386 0.93018 0.90502 0.94105 1.19405 1.10920 1.20667 0.96736 0.89792 1.25942 0.96838 0.93992 0.97991 1.69719 1.23086 1.22651 1.27431 0.86131 0.79689 0.78414 0.81560 1.19471 1.20043 1.18411 1.21472 0.97028 1.01117 0.91937 1.20929 1.07207 0.88826 0.94557 1.98265 1.96930 1.54741 1.57548 0.89994 0.90982 0.90109 0.85356 0.88822 0.91082 0.91211 0.74053 0.84461 0.90551 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 10.19 36.01 0.37 -1.92 16 2 C 0.37 6.03 6.97 -33.53 -0.23 5.79 16 3 O -0.48 -9.54 14.81 5.34 0.08 -9.46 16 4 C -0.35 -5.17 9.38 -39.78 -0.37 -5.54 16 5 C 0.28 4.73 5.76 -81.49 -0.47 4.26 16 6 C -0.13 -1.89 9.27 36.00 0.33 -1.55 16 7 N -0.66 -13.11 3.61 -8.20 -0.03 -13.14 16 8 C 0.27 6.12 7.35 -154.87 -1.14 4.98 16 9 N -0.49 -11.21 8.58 -11.71 -0.10 -11.31 16 10 C 0.02 0.37 10.97 -16.74 -0.18 0.19 16 11 C 0.05 1.14 5.57 -106.65 -0.59 0.54 16 12 C -0.45 -11.00 9.08 -37.85 -0.34 -11.34 16 13 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 14 C 0.07 1.64 5.34 -17.34 -0.09 1.55 16 15 N -0.80 -19.80 10.69 55.55 0.59 -19.21 16 16 Si 0.92 17.81 29.56 -169.99 -5.03 12.78 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 C -0.09 -2.23 8.49 -38.98 -0.33 -2.57 16 21 C -0.08 -1.97 6.32 -39.58 -0.25 -2.22 16 22 Cl -0.10 -2.16 27.57 -51.86 -1.43 -3.59 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.09 1.40 7.88 -51.92 -0.41 0.99 16 28 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.42 8.24 6.24 -40.82 -0.25 7.98 16 31 H 0.14 2.89 8.06 -52.49 -0.42 2.46 16 32 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 33 H 0.15 3.83 6.19 -52.48 -0.32 3.50 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -27.52 304.06 -8.13 -35.65 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -3.49 Total: 11.52 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.31 Total: -7.83 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.46 Total: -43.66 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.43 Total: -3.59 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.52 -8.13 -35.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155892166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.092 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds