Wall clock time and date at job start Tue Mar 31 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21528 * 120.00224 * 2 1 4 4 C 1.40306 * 119.99736 * 180.02562 * 2 1 3 5 5 C 1.35511 * 119.99924 * 185.92020 * 4 2 1 6 6 C 1.50698 * 120.00379 * 180.88856 * 5 4 2 7 7 N 1.36490 * 119.99827 * 0.87788 * 5 4 2 8 8 C 1.38619 * 119.99536 * 117.91041 * 7 5 4 9 9 N 1.32744 * 119.43414 * 5.69418 * 8 7 5 10 10 C 1.31417 * 121.75497 * 179.97438 * 9 8 7 11 11 C 1.40842 * 120.38359 * 359.97438 * 10 9 8 12 12 C 1.41160 * 120.57221 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99955 * 330.69437 * 12 11 10 14 14 C 1.39907 * 120.00184 * 150.69966 * 12 11 10 15 15 N 1.30875 * 120.00038 * 353.70783 * 14 12 11 16 16 Si 1.86803 * 120.00032 * 173.70606 * 14 12 11 17 17 H 1.48501 * 109.46932 * 94.98099 * 16 14 12 18 18 H 1.48498 * 109.47065 * 214.98335 * 16 14 12 19 19 H 1.48498 * 109.46881 * 334.98560 * 16 14 12 20 20 C 1.41270 * 118.85774 * 0.02562 * 11 10 9 21 21 C 1.36706 * 118.39388 * 359.97438 * 20 11 10 22 22 Cl 1.73602 * 120.26310 * 179.97438 * 21 20 11 23 23 H 1.08996 * 109.47321 * 239.99602 * 1 2 3 24 24 H 1.08995 * 109.47035 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46987 * 119.99763 * 1 2 3 26 26 H 1.07994 * 120.00297 * 5.91752 * 4 2 1 27 27 H 1.09010 * 109.46510 * 275.00173 * 6 5 4 28 28 H 1.09000 * 109.46899 * 34.99153 * 6 5 4 29 29 H 1.08993 * 109.47433 * 155.00017 * 6 5 4 30 30 H 0.96990 * 120.00409 * 297.91259 * 7 5 4 31 31 H 1.07994 * 119.80775 * 180.26948 * 10 9 8 32 32 H 0.96996 * 119.99704 * 180.02562 * 15 14 12 33 33 H 1.08003 * 120.80035 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1147 1.0524 0.0000 4 6 2.2085 -1.2151 -0.0005 5 6 3.5582 -1.2183 0.1205 6 6 4.3135 -2.5222 0.0998 7 7 4.2335 -0.0406 0.2610 8 6 4.9675 0.2045 1.4111 9 7 5.0996 -0.7561 2.3177 10 6 5.7854 -0.5736 3.4237 11 6 6.4079 0.6635 3.6801 12 6 7.1460 0.8637 4.8666 13 1 6.8827 0.3234 5.7639 14 6 8.2184 1.7621 4.8801 15 7 8.6157 2.3238 3.7668 16 14 9.0833 2.1599 6.4874 17 1 10.2741 1.2855 6.6383 18 1 9.5110 3.5819 6.4806 19 1 8.1524 1.9283 7.6209 20 6 6.2808 1.7007 2.7293 21 6 5.5564 1.4582 1.5957 22 17 5.3684 2.6983 0.3955 23 1 -0.3634 -0.5139 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6728 -2.1478 -0.0974 27 1 4.3270 -2.9501 1.1023 28 1 3.8236 -3.2151 -0.5843 29 1 5.3360 -2.3446 -0.2333 30 1 4.1999 0.6248 -0.4439 31 1 5.8763 -1.3785 4.1380 32 1 9.3594 2.9463 3.7762 33 1 6.7448 2.6619 2.8942 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155892166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:12 Heat of formation + Delta-G solvation = -8.276396 kcal Electronic energy + Delta-G solvation = -19215.106589 eV Core-core repulsion = 16073.434942 eV Total energy + Delta-G solvation = -3141.671647 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18966 -40.15408 -37.72404 -37.31414 -35.70801 -33.29056 -32.45668 -31.47284 -30.40456 -28.45319 -26.88071 -24.25429 -23.31963 -21.81578 -19.99376 -19.33325 -18.70286 -17.57069 -17.01717 -16.55922 -16.16278 -15.92228 -15.66256 -15.23031 -14.96212 -14.33798 -14.05651 -14.02666 -13.75527 -13.51424 -13.25586 -13.15635 -12.88536 -12.84272 -12.80847 -12.75137 -12.49054 -12.04421 -11.75122 -11.43956 -11.05332 -10.34145 -10.26850 -10.02858 -9.82573 -8.69382 -8.52326 -6.31364 0.06552 0.60684 0.93528 1.37501 1.43012 1.51512 1.56948 2.15956 2.22247 2.51741 2.72907 3.55068 3.62065 4.02850 4.23947 4.39506 4.55504 4.60806 4.68937 4.74789 4.77103 4.84968 4.95442 5.05402 5.12122 5.23144 5.27271 5.37195 5.64651 5.74496 5.79231 6.31625 6.51961 6.61754 6.78200 6.83048 6.98611 7.55202 8.33498 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025188 B = 0.005023 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.371979 B = 5572.509234 C = 6027.010364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.361 3.639 3 O -0.523 6.523 4 C -0.324 4.324 5 C 0.246 3.754 6 C -0.124 4.124 7 N -0.666 5.666 8 C 0.275 3.725 9 N -0.492 5.492 10 C 0.015 3.985 11 C 0.017 3.983 12 C -0.474 4.474 13 H 0.091 0.909 14 C 0.029 3.971 15 N -0.837 5.837 16 Si 0.989 3.011 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.255 1.255 20 C -0.105 4.105 21 C -0.102 4.102 22 Cl -0.086 7.086 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.171 0.829 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.414 0.586 31 H 0.158 0.842 32 H 0.288 0.712 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 -6.525 -5.103 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.248 3.752 3 O -0.407 6.407 4 C -0.347 4.347 5 C 0.145 3.855 6 C -0.182 4.182 7 N -0.300 5.300 8 C 0.043 3.957 9 N -0.206 5.206 10 C -0.144 4.144 11 C 0.012 3.988 12 C -0.505 4.505 13 H 0.109 0.891 14 C -0.184 4.184 15 N -0.464 5.464 16 Si 0.810 3.190 17 H -0.188 1.188 18 H -0.198 1.198 19 H -0.179 1.179 20 C -0.133 4.133 21 C -0.135 4.135 22 Cl -0.058 7.058 23 H 0.119 0.881 24 H 0.084 0.916 25 H 0.131 0.869 26 H 0.189 0.811 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.073 0.927 30 H 0.256 0.744 31 H 0.175 0.825 32 H 0.099 0.901 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.368 -6.620 -5.396 11.957 hybrid contribution 0.987 1.667 0.276 1.957 sum -7.381 -4.952 -5.120 10.258 Atomic orbital electron populations 1.22161 0.92386 1.04205 1.05640 1.21393 0.93618 0.88587 0.71611 1.90600 1.72864 1.36623 1.40593 1.22561 0.93131 1.01129 1.17896 1.20896 0.91554 0.88009 0.85032 1.21243 0.99554 0.93314 1.04113 1.41080 1.52012 1.18984 1.17886 1.17554 0.98901 0.89173 0.90027 1.66799 1.19804 1.30592 1.03426 1.22775 1.00878 0.96266 0.94527 1.18681 0.94110 0.91244 0.94798 1.19677 1.11798 1.22041 0.96964 0.89092 1.26789 0.97117 0.93318 1.01182 1.69800 1.23793 1.23331 1.29438 0.85061 0.78503 0.78123 0.77290 1.18819 1.19761 1.17855 1.21389 0.98052 1.00736 0.93081 1.21066 1.07576 0.89999 0.94815 1.98252 1.96857 1.54048 1.56669 0.88142 0.91634 0.86857 0.81136 0.89568 0.87129 0.92723 0.74439 0.82452 0.90121 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.73 10.19 71.24 0.73 -3.01 16 2 C 0.36 10.80 6.97 26.19 0.18 10.98 16 3 O -0.52 -20.63 14.81 -3.80 -0.06 -20.68 16 4 C -0.32 -8.67 9.38 22.14 0.21 -8.46 16 5 C 0.25 7.83 5.76 41.20 0.24 8.06 16 6 C -0.12 -3.24 9.27 71.24 0.66 -2.58 16 7 N -0.67 -26.16 3.61 -179.87 -0.65 -26.81 16 8 C 0.27 12.60 7.35 133.24 0.98 13.58 16 9 N -0.49 -22.32 8.58 -190.96 -1.64 -23.95 16 10 C 0.02 0.72 10.97 85.39 0.94 1.65 16 11 C 0.02 0.88 5.57 -21.18 -0.12 0.76 16 12 C -0.47 -23.80 9.08 23.39 0.21 -23.59 16 13 H 0.09 4.26 7.85 -2.91 -0.02 4.24 16 14 C 0.03 1.41 5.34 85.24 0.46 1.87 16 15 N -0.84 -42.45 10.69 21.82 0.23 -42.21 16 16 Si 0.99 36.59 29.56 68.60 2.03 38.62 16 17 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 18 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 20 C -0.11 -5.51 8.49 22.66 0.19 -5.32 16 21 C -0.10 -4.98 6.32 22.27 0.14 -4.84 16 22 Cl -0.09 -3.72 27.57 -2.72 -0.07 -3.79 16 23 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 25 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 27 H 0.09 2.40 7.88 -2.38 -0.02 2.38 16 28 H 0.11 1.95 8.11 -2.39 -0.02 1.93 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.41 16.44 6.24 -92.72 -0.58 15.86 16 31 H 0.16 6.57 8.06 -2.91 -0.02 6.54 16 32 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 33 H 0.13 7.10 6.19 -2.91 -0.02 7.09 16 Total: -1.00 -61.39 304.06 5.22 -56.16 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.57 Total: 33.55 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.81 Total: -10.89 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -2.05 Total: -92.97 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.68 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 17 Polarization: -3.72 SS G_CDS: -0.07 Total: -3.79 kcal Total: -61.39 5.22 -56.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155892166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.887 kcal (2) G-P(sol) polarization free energy of solvation -61.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds