Wall clock time and date at job start Tue Mar 31 2020 01:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48503 * 109.46859 * 240.00130 * 3 2 1 5 5 H 1.48496 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46896 * 120.00456 * 3 2 1 7 7 C 1.39872 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99702 * 163.25104 * 7 2 1 9 9 C 1.41197 * 119.99897 * 343.24928 * 7 2 1 10 10 C 1.40789 * 120.56055 * 155.70829 * 9 7 2 11 11 N 1.31475 * 120.38630 * 180.02562 * 10 9 7 12 12 C 1.32744 * 121.74005 * 0.02562 * 11 10 9 13 13 N 1.38410 * 119.43638 * 179.97438 * 12 11 10 14 14 C 1.46500 * 120.00211 * 0.02562 * 13 12 11 15 15 C 1.52999 * 109.47072 * 179.97438 * 14 13 12 16 16 C 1.53844 * 113.65550 * 273.99773 * 15 14 13 17 17 C 1.51778 * 86.68492 * 220.76422 * 16 15 14 18 18 O 1.20758 * 135.74690 * 205.16037 * 17 16 15 19 19 C 1.51578 * 88.47103 * 25.08086 * 17 16 15 20 20 C 1.39790 * 121.12561 * 359.97438 * 12 11 10 21 21 Cl 1.73608 * 120.26279 * 180.02562 * 20 12 11 22 22 C 1.36669 * 119.47667 * 0.02562 * 20 12 11 23 23 H 0.97002 * 119.99496 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.81098 * 359.74324 * 10 9 7 25 25 H 0.97006 * 120.00069 * 180.02562 * 13 12 11 26 26 H 1.08999 * 109.46590 * 300.00008 * 14 13 12 27 27 H 1.09000 * 109.46762 * 59.99902 * 14 13 12 28 28 H 1.08994 * 112.88299 * 45.33436 * 15 14 13 29 29 H 1.09000 * 113.66771 * 335.19440 * 16 15 14 30 30 H 1.08998 * 113.66694 * 106.26878 * 16 15 14 31 31 H 1.08997 * 113.66428 * 220.45974 * 19 17 16 32 32 H 1.08994 * 113.66828 * 89.38505 * 19 17 16 33 33 H 1.07996 * 120.80237 * 180.02562 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2126 5 1 1.2782 2.7464 0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0540 -1.2311 -0.2701 9 6 1.3473 -2.4083 0.3513 10 6 1.8243 -3.6510 -0.1073 11 7 1.2057 -4.7634 0.2220 12 6 0.1221 -4.7592 0.9887 13 7 -0.4917 -5.9587 1.3056 14 6 0.0555 -7.2186 0.7962 15 6 -0.8034 -8.3843 1.2903 16 6 -0.3992 -8.9027 2.6812 17 6 -0.6311 -10.2983 2.1315 18 8 -0.9114 -11.3762 2.5981 19 6 -0.3605 -9.7525 0.7435 20 6 -0.4098 -3.5641 1.4816 21 17 -1.8277 -3.5847 2.4831 22 6 0.1954 -2.3792 1.1688 23 1 -0.4849 0.8401 0.0004 24 1 2.7007 -3.6905 -0.7371 25 1 -1.2842 -5.9651 1.8649 26 1 0.0532 -7.2013 -0.2937 27 1 1.0771 -7.3425 1.1555 28 1 -1.8721 -8.1971 1.1868 29 1 0.6407 -8.7009 2.9383 30 1 -1.0948 -8.6217 3.4720 31 1 -1.0250 -10.1538 -0.0216 32 1 0.6902 -9.7894 0.4560 33 1 -0.1971 -1.4434 1.5382 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157611113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:31 Heat of formation + Delta-G solvation = 6.158766 kcal Electronic energy + Delta-G solvation = -18532.830737 eV Core-core repulsion = 15391.785046 eV Total energy + Delta-G solvation = -3141.045691 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17692 -38.75547 -37.02443 -35.61659 -34.79081 -33.35435 -30.55841 -29.60406 -27.00868 -26.30486 -24.57545 -22.37894 -21.23320 -20.83189 -19.15767 -17.48921 -16.82232 -16.21395 -15.92221 -15.43135 -15.30455 -14.86655 -14.32861 -14.22481 -13.66791 -13.23048 -13.07894 -12.75222 -12.44986 -12.26807 -11.82517 -11.49670 -11.44549 -11.24419 -11.11435 -11.04777 -10.92752 -10.70639 -10.43460 -9.89987 -9.59178 -9.52121 -8.86735 -8.34248 -8.18391 -6.96869 -6.73718 -4.35503 1.69504 2.46730 2.77424 3.02810 3.04668 3.14090 3.16438 3.70343 3.85735 3.91663 4.39049 4.52924 4.61955 4.81800 5.08811 5.29112 5.33191 5.44748 5.48928 5.62031 5.81460 5.93523 6.11882 6.18950 6.37590 6.59128 6.89220 7.02766 7.11236 7.29695 7.59956 7.64304 8.04945 8.30470 8.36093 8.63367 8.68490 9.47600 10.09059 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.003711 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.813636 B = 7543.713905 C = 8137.859376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.039 3.961 10 C 0.014 3.986 11 N -0.502 5.502 12 C 0.289 3.711 13 N -0.742 5.742 14 C 0.163 3.837 15 C -0.114 4.114 16 C -0.187 4.187 17 C 0.358 3.642 18 O -0.435 6.435 19 C -0.182 4.182 20 C -0.103 4.103 21 Cl -0.115 7.115 22 C -0.088 4.088 23 H 0.283 0.717 24 H 0.134 0.866 25 H 0.397 0.603 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -8.763 2.187 9.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.033 3.967 10 C -0.145 4.145 11 N -0.218 5.218 12 C 0.055 3.945 13 N -0.383 5.383 14 C 0.037 3.963 15 C -0.133 4.133 16 C -0.224 4.224 17 C 0.232 3.768 18 O -0.306 6.306 19 C -0.220 4.220 20 C -0.135 4.135 21 Cl -0.087 7.087 22 C -0.115 4.115 23 H 0.094 0.906 24 H 0.152 0.848 25 H 0.232 0.768 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.299 -10.071 2.101 10.369 hybrid contribution -0.495 1.842 0.466 1.963 sum -1.795 -8.229 2.567 8.805 Atomic orbital electron populations 1.69786 1.07530 1.29627 1.35456 1.25906 0.94787 1.01445 0.92310 0.86303 0.80053 0.80031 0.80013 1.18937 1.20351 1.18811 1.19313 0.97777 0.90625 1.40635 0.89940 1.18297 0.92540 0.93900 0.91932 1.22347 1.01672 0.87204 1.03262 1.66758 1.07838 1.32287 1.14926 1.17396 0.93374 0.84148 0.99561 1.43706 1.33099 1.02116 1.59396 1.20800 0.95538 0.81530 0.98386 1.22508 1.01263 0.94229 0.95282 1.24209 1.04677 0.94421 0.99110 1.25875 0.69579 0.87920 0.93408 1.90409 1.37024 1.27117 1.76084 1.24027 1.04578 0.95314 0.98062 1.20934 0.93044 0.95256 1.04263 1.98242 1.41968 1.98704 1.69807 1.21314 0.97145 0.95647 0.97394 0.90580 0.84812 0.76773 0.92425 0.92512 0.88149 0.86137 0.89000 0.88841 0.86034 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.63 10.91 55.54 0.61 -19.03 16 2 C 0.07 1.73 5.18 -17.33 -0.09 1.64 16 3 Si 0.91 17.74 29.59 -169.99 -5.03 12.71 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.15 9.07 -37.85 -0.34 -11.50 16 8 H 0.08 1.92 7.90 -52.49 -0.41 1.50 16 9 C 0.04 0.97 5.59 -106.65 -0.60 0.37 16 10 C 0.01 0.32 10.97 -16.74 -0.18 0.14 16 11 N -0.50 -11.20 9.52 -11.75 -0.11 -11.31 16 12 C 0.29 6.13 7.48 -155.05 -1.16 4.97 16 13 N -0.74 -12.47 5.64 -60.32 -0.34 -12.81 16 14 C 0.16 2.20 5.49 -4.04 -0.02 2.17 16 15 C -0.11 -1.13 3.77 -89.83 -0.34 -1.46 16 16 C -0.19 -1.75 7.62 -26.91 -0.21 -1.96 16 17 C 0.36 3.77 9.14 -28.16 -0.26 3.51 16 18 O -0.43 -6.08 17.99 6.00 0.11 -5.97 16 19 C -0.18 -1.54 7.62 -27.01 -0.21 -1.75 16 20 C -0.10 -2.28 6.32 -39.57 -0.25 -2.53 16 21 Cl -0.12 -2.17 27.56 -51.86 -1.43 -3.59 16 22 C -0.09 -2.15 8.52 -38.99 -0.33 -2.49 16 23 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 24 H 0.13 2.84 8.06 -52.49 -0.42 2.42 16 25 H 0.40 6.15 7.08 -40.82 -0.29 5.86 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.12 1.07 7.92 -51.93 -0.41 0.66 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.12 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.14 3.55 6.20 -52.49 -0.33 3.22 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -27.27 303.28 -9.13 -36.40 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.52 Total: 7.91 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.98 Total: -8.88 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.15 Total: -43.14 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -1.43 Total: -3.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.27 -9.13 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157611113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.557 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds