Wall clock time and date at job start Tue Mar 31 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48503 * 109.46859 * 240.00130 * 3 2 1 5 5 H 1.48496 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46896 * 120.00456 * 3 2 1 7 7 C 1.39872 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99702 * 163.25104 * 7 2 1 9 9 C 1.41197 * 119.99897 * 343.24928 * 7 2 1 10 10 C 1.40789 * 120.56055 * 155.70829 * 9 7 2 11 11 N 1.31475 * 120.38630 * 180.02562 * 10 9 7 12 12 C 1.32744 * 121.74005 * 0.02562 * 11 10 9 13 13 N 1.38410 * 119.43638 * 179.97438 * 12 11 10 14 14 C 1.46500 * 120.00211 * 0.02562 * 13 12 11 15 15 C 1.52999 * 109.47072 * 179.97438 * 14 13 12 16 16 C 1.53844 * 113.65550 * 273.99773 * 15 14 13 17 17 C 1.51778 * 86.68492 * 220.76422 * 16 15 14 18 18 O 1.20758 * 135.74690 * 205.16037 * 17 16 15 19 19 C 1.51578 * 88.47103 * 25.08086 * 17 16 15 20 20 C 1.39790 * 121.12561 * 359.97438 * 12 11 10 21 21 Cl 1.73608 * 120.26279 * 180.02562 * 20 12 11 22 22 C 1.36669 * 119.47667 * 0.02562 * 20 12 11 23 23 H 0.97002 * 119.99496 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.81098 * 359.74324 * 10 9 7 25 25 H 0.97006 * 120.00069 * 180.02562 * 13 12 11 26 26 H 1.08999 * 109.46590 * 300.00008 * 14 13 12 27 27 H 1.09000 * 109.46762 * 59.99902 * 14 13 12 28 28 H 1.08994 * 112.88299 * 45.33436 * 15 14 13 29 29 H 1.09000 * 113.66771 * 335.19440 * 16 15 14 30 30 H 1.08998 * 113.66694 * 106.26878 * 16 15 14 31 31 H 1.08997 * 113.66428 * 220.45974 * 19 17 16 32 32 H 1.08994 * 113.66828 * 89.38505 * 19 17 16 33 33 H 1.07996 * 120.80237 * 180.02562 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2126 5 1 1.2782 2.7464 0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0540 -1.2311 -0.2701 9 6 1.3473 -2.4083 0.3513 10 6 1.8243 -3.6510 -0.1073 11 7 1.2057 -4.7634 0.2220 12 6 0.1221 -4.7592 0.9887 13 7 -0.4917 -5.9587 1.3056 14 6 0.0555 -7.2186 0.7962 15 6 -0.8034 -8.3843 1.2903 16 6 -0.3992 -8.9027 2.6812 17 6 -0.6311 -10.2983 2.1315 18 8 -0.9114 -11.3762 2.5981 19 6 -0.3605 -9.7525 0.7435 20 6 -0.4098 -3.5641 1.4816 21 17 -1.8277 -3.5847 2.4831 22 6 0.1954 -2.3792 1.1688 23 1 -0.4849 0.8401 0.0004 24 1 2.7007 -3.6905 -0.7371 25 1 -1.2842 -5.9651 1.8649 26 1 0.0532 -7.2013 -0.2937 27 1 1.0771 -7.3425 1.1555 28 1 -1.8721 -8.1971 1.1868 29 1 0.6407 -8.7009 2.9383 30 1 -1.0948 -8.6217 3.4720 31 1 -1.0250 -10.1538 -0.0216 32 1 0.6902 -9.7894 0.4560 33 1 -0.1971 -1.4434 1.5382 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157611113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:30 Heat of formation + Delta-G solvation = -8.296390 kcal Electronic energy + Delta-G solvation = -18533.457560 eV Core-core repulsion = 15391.785046 eV Total energy + Delta-G solvation = -3141.672514 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.08160 -40.42185 -38.06364 -37.25334 -36.33353 -34.92479 -32.33298 -31.23436 -28.39094 -27.05753 -26.20465 -23.91744 -22.87724 -22.08144 -19.98715 -19.27720 -18.28772 -17.62462 -16.91497 -16.72606 -16.36861 -16.21709 -15.94922 -15.48227 -15.05898 -14.80833 -14.47107 -13.94037 -13.61635 -13.58405 -13.44347 -13.16100 -12.86280 -12.65889 -12.46928 -12.36358 -12.06439 -11.92182 -11.83332 -11.57792 -11.19067 -10.47993 -10.40149 -10.10299 -9.95004 -8.68926 -8.40997 -6.16677 0.68542 0.86851 1.02649 1.44323 1.45165 1.54260 1.58220 2.24723 2.63046 2.76927 2.91526 3.47849 3.67837 3.82417 3.93738 4.17603 4.31882 4.37664 4.57126 4.65807 4.75499 4.79670 4.89016 4.96899 5.06200 5.12299 5.24844 5.30621 5.36798 5.83070 5.83478 6.35841 6.48330 6.63163 6.79304 6.87015 6.92763 7.75277 8.36289 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.003711 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.813636 B = 7543.713905 C = 8137.859376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.009 3.991 10 C 0.010 3.990 11 N -0.508 5.508 12 C 0.296 3.704 13 N -0.732 5.732 14 C 0.162 3.838 15 C -0.106 4.106 16 C -0.183 4.183 17 C 0.360 3.640 18 O -0.474 6.474 19 C -0.168 4.168 20 C -0.117 4.117 21 Cl -0.087 7.087 22 C -0.103 4.103 23 H 0.288 0.712 24 H 0.148 0.852 25 H 0.404 0.596 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -9.367 2.210 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.515 4.515 8 H 0.104 0.896 9 C 0.004 3.996 10 C -0.148 4.148 11 N -0.224 5.224 12 C 0.060 3.940 13 N -0.373 5.373 14 C 0.038 3.962 15 C -0.125 4.125 16 C -0.220 4.220 17 C 0.237 3.763 18 O -0.348 6.348 19 C -0.206 4.206 20 C -0.150 4.150 21 Cl -0.059 7.059 22 C -0.131 4.131 23 H 0.098 0.902 24 H 0.165 0.835 25 H 0.241 0.759 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.270 -10.707 2.126 10.989 hybrid contribution -0.593 1.883 0.502 2.037 sum -1.862 -8.824 2.628 9.393 Atomic orbital electron populations 1.69850 1.08889 1.30609 1.36521 1.26691 0.95442 1.04417 0.91440 0.85251 0.78675 0.75789 0.80046 1.18278 1.19809 1.18603 1.19574 0.98192 0.91515 1.42194 0.89577 1.18576 0.93368 0.94787 0.92903 1.22589 1.02054 0.87067 1.03132 1.66841 1.08348 1.31754 1.15504 1.17713 0.92743 0.85426 0.98075 1.43850 1.32817 1.01877 1.58726 1.20935 0.96182 0.81090 0.97989 1.22389 1.01041 0.93322 0.95758 1.24245 1.05326 0.93467 0.98988 1.26147 0.68052 0.87516 0.94586 1.90403 1.38897 1.28566 1.76965 1.24013 1.05863 0.93456 0.97229 1.21023 0.94085 0.95059 1.04806 1.98238 1.40132 1.98671 1.68821 1.21253 0.97788 0.95863 0.98162 0.90183 0.83475 0.75913 0.93093 0.92563 0.87344 0.85322 0.88486 0.87454 0.84401 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.70 10.91 21.82 0.24 -41.46 16 2 C 0.03 1.64 5.18 85.23 0.44 2.08 16 3 Si 0.98 36.43 29.59 68.60 2.03 38.46 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.48 -24.28 9.07 23.39 0.21 -24.07 16 8 H 0.09 4.07 7.90 -2.91 -0.02 4.05 16 9 C 0.01 0.47 5.59 -21.18 -0.12 0.35 16 10 C 0.01 0.45 10.97 85.37 0.94 1.39 16 11 N -0.51 -22.24 9.52 -191.09 -1.82 -24.06 16 12 C 0.30 12.25 7.48 133.32 1.00 13.24 16 13 N -0.73 -23.13 5.64 -344.76 -1.94 -25.08 16 14 C 0.16 3.99 5.49 86.38 0.47 4.46 16 15 C -0.11 -1.80 3.77 -10.28 -0.04 -1.83 16 16 C -0.18 -2.97 7.62 30.48 0.23 -2.73 16 17 C 0.36 6.82 9.14 29.67 0.27 7.09 16 18 O -0.47 -12.73 17.99 -1.44 -0.03 -12.76 16 19 C -0.17 -2.34 7.62 30.41 0.23 -2.11 16 20 C -0.12 -5.16 6.32 22.28 0.14 -5.01 16 21 Cl -0.09 -3.16 27.56 -2.72 -0.07 -3.24 16 22 C -0.10 -5.15 8.52 22.65 0.19 -4.95 16 23 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 24 H 0.15 6.24 8.06 -2.91 -0.02 6.22 16 25 H 0.40 11.56 7.08 -92.70 -0.66 10.90 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.43 7.87 -2.39 -0.02 1.41 16 28 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.13 1.94 7.92 -2.39 -0.02 1.92 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.14 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.12 6.44 6.20 -2.91 -0.02 6.42 16 Total: -1.00 -58.87 303.28 2.87 -55.99 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.50 Total: 24.24 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 3.97 Total: -12.10 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.52 Total: -90.60 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.03 Total: -12.76 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Atomic # 17 Polarization: -3.16 SS G_CDS: -0.07 Total: -3.24 kcal Total: -58.87 2.87 -55.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157611113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.698 kcal (2) G-P(sol) polarization free energy of solvation -58.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds