Wall clock time and date at job start Tue Mar 31 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43199 * 119.99963 * 309.39422 * 3 2 1 5 5 N 3.51031 * 140.68661 * 309.39827 * 2 1 3 6 6 C 1.41154 * 119.99698 * 129.40286 * 3 2 1 7 7 C 1.38968 * 119.99991 * 5.60517 * 6 3 2 8 8 H 1.08001 * 120.00552 * 341.49259 * 7 6 3 9 9 C 1.40856 * 120.00015 * 161.49295 * 7 6 3 10 10 N 1.30327 * 119.99796 * 350.66276 * 9 7 6 11 11 Si 1.86796 * 120.00260 * 170.66386 * 9 7 6 12 12 H 1.48504 * 109.46906 * 90.00183 * 11 9 7 13 13 H 1.48501 * 109.47247 * 209.99715 * 11 9 7 14 14 H 1.48497 * 109.47296 * 330.00282 * 11 9 7 15 15 N 1.38376 * 119.99509 * 185.60908 * 6 3 2 16 16 C 1.38932 * 120.00014 * 120.16465 * 15 6 3 17 17 N 1.32381 * 120.02649 * 356.69259 * 16 15 6 18 18 C 1.32300 * 121.99520 * 180.02562 * 17 16 15 19 19 C 1.37695 * 121.60860 * 0.04330 * 18 17 16 20 20 C 1.39365 * 119.08482 * 359.97438 * 19 18 17 21 21 O 1.34371 * 134.55892 * 180.34491 * 20 19 18 22 22 C 1.34576 * 110.87014 * 180.12425 * 21 20 19 23 23 C 1.34081 * 110.10797 * 359.54809 * 22 21 20 24 24 C 1.39909 * 120.02965 * 176.74337 * 16 15 6 25 25 H 0.96998 * 120.00307 * 185.05297 * 10 9 7 26 26 H 0.96995 * 119.99685 * 300.15905 * 15 6 3 27 27 H 1.08002 * 119.19435 * 180.02562 * 18 17 16 28 28 H 1.08004 * 120.46066 * 179.97438 * 19 18 17 29 29 H 1.08000 * 124.95252 * 179.81346 * 22 21 20 30 30 H 1.08000 * 126.92236 * 180.24139 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.7861 0.9584 5 7 3.8519 -1.4116 1.7186 6 6 3.2734 0.7769 -0.9446 7 6 2.5831 1.6296 -1.7977 8 1 1.5237 1.4928 -1.9570 9 6 3.2651 2.6723 -2.4547 10 7 4.4952 2.9535 -2.1285 11 14 2.4065 3.6521 -3.7934 12 1 1.7169 4.8193 -3.1874 13 1 3.4098 4.1272 -4.7798 14 1 1.4104 2.7888 -4.4771 15 7 4.6522 0.6888 -1.0211 16 6 5.2578 0.2830 -2.2039 17 7 4.5150 -0.0823 -3.2370 18 6 5.0504 -0.4758 -4.3810 19 6 6.4148 -0.5276 -4.5592 20 6 7.2500 -0.1555 -3.5074 21 8 8.5814 -0.0818 -3.3415 22 6 8.8872 0.3452 -2.1024 23 6 7.7658 0.5792 -1.4057 24 6 6.6531 0.2590 -2.3037 25 1 4.9404 3.7171 -2.5279 26 1 5.1959 0.9105 -0.2491 27 1 4.4015 -0.7636 -5.1949 28 1 6.8321 -0.8522 -5.5010 29 1 9.8898 0.4837 -1.7256 30 1 7.6965 0.9325 -0.3874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158210786.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:34 Heat of formation + Delta-G solvation = 104.542121 kcal Electronic energy + Delta-G solvation = -20557.871211 eV Core-core repulsion = 17319.984249 eV Total energy + Delta-G solvation = -3237.886963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.19955 -39.00102 -36.96755 -35.18937 -34.66787 -33.68130 -32.38188 -31.02961 -30.21568 -28.02593 -27.08905 -23.52429 -22.76578 -21.63597 -20.66240 -18.91497 -18.09327 -17.37690 -16.87675 -16.30336 -15.86510 -15.57613 -15.37554 -14.60499 -14.00110 -13.58350 -13.15312 -13.08848 -12.73609 -12.55930 -12.52627 -12.26051 -11.75794 -11.69150 -11.51991 -11.49371 -11.33446 -11.00997 -10.85436 -10.73374 -10.22781 -10.08274 -9.36464 -8.99954 -8.83163 -8.07642 -7.69326 -6.82017 -5.36485 1.35595 1.82174 2.28155 2.65739 2.72547 2.79106 2.91289 3.01796 3.42443 3.75509 3.91421 4.09782 4.29297 4.36043 4.46149 4.74322 4.99129 5.18996 5.27476 5.44067 5.46557 5.64771 5.77381 5.90703 6.15227 6.23119 6.34881 6.43383 6.59113 6.72135 7.09762 7.27333 7.39946 7.64461 7.78969 8.07098 8.31855 8.85872 9.00921 9.18579 9.22546 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.008183 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.236675 B = 3420.848185 C = 4604.512191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C 0.328 3.672 3 C -0.318 4.318 4 C 0.310 3.690 5 N -0.540 5.540 6 C 0.381 3.619 7 C -0.342 4.342 8 H 0.110 0.890 9 C 0.078 3.922 10 N -0.726 5.726 11 Si 0.926 3.074 12 H -0.259 1.259 13 H -0.268 1.268 14 H -0.246 1.246 15 N -0.627 5.627 16 C 0.507 3.493 17 N -0.535 5.535 18 C 0.171 3.829 19 C -0.249 4.249 20 C 0.123 3.877 21 O -0.196 6.196 22 C -0.036 4.036 23 C -0.164 4.164 24 C -0.243 4.243 25 H 0.300 0.700 26 H 0.409 0.591 27 H 0.160 0.840 28 H 0.129 0.871 29 H 0.202 0.798 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 3.266 -7.629 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.220 5.220 2 C 0.020 3.980 3 C -0.336 4.336 4 C 0.003 3.997 5 N -0.223 5.223 6 C 0.277 3.723 7 C -0.369 4.369 8 H 0.128 0.872 9 C -0.153 4.153 10 N -0.345 5.345 11 Si 0.747 3.253 12 H -0.183 1.183 13 H -0.193 1.193 14 H -0.169 1.169 15 N -0.248 5.248 16 C 0.266 3.734 17 N -0.254 5.254 18 C 0.016 3.984 19 C -0.274 4.274 20 C 0.069 3.931 21 O -0.096 6.096 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.250 4.250 25 H 0.112 0.888 26 H 0.246 0.754 27 H 0.177 0.823 28 H 0.147 0.853 29 H 0.219 0.781 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.132 2.369 -6.639 10.762 hybrid contribution 1.245 0.972 -0.466 1.647 sum 9.378 3.341 -7.105 12.231 Atomic orbital electron populations 1.81051 1.12216 1.15282 1.13451 1.24652 0.91264 0.90878 0.91198 1.12821 0.83067 1.25195 1.12551 1.25233 0.92439 0.90742 0.91260 1.81074 1.09956 1.16225 1.15034 1.16637 0.79799 0.86781 0.89046 1.20223 0.97799 1.03947 1.14966 0.87170 1.26517 0.94301 0.97841 0.96680 1.69479 1.10510 1.21641 1.32848 0.85930 0.80369 0.79703 0.79280 1.18341 1.19291 1.16873 1.41282 1.05385 1.67357 1.10789 1.17374 0.84678 0.85201 0.86104 1.67500 1.38224 1.19800 0.99890 1.22187 0.90977 0.91368 0.93890 1.20479 0.92590 1.15730 0.98594 1.19501 0.81086 0.97182 0.95374 1.83885 1.22310 1.70994 1.32424 1.23708 0.99861 1.03942 0.82479 1.22296 0.90515 1.05162 1.00487 1.20040 0.93710 1.14659 0.96633 0.88808 0.75401 0.82312 0.85271 0.78094 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -13.01 18.54 41.84 0.78 -12.23 16 2 C 0.33 7.67 13.88 -22.47 -0.31 7.36 16 3 C -0.32 -7.12 5.88 -104.94 -0.62 -7.73 16 4 C 0.31 7.11 14.80 -22.46 -0.33 6.78 16 5 N -0.54 -12.81 18.54 41.85 0.78 -12.03 16 6 C 0.38 8.10 5.52 -83.53 -0.46 7.64 16 7 C -0.34 -7.17 7.86 -38.32 -0.30 -7.47 16 8 H 0.11 2.37 6.96 -52.49 -0.37 2.01 16 9 C 0.08 1.49 4.82 -17.20 -0.08 1.41 16 10 N -0.73 -13.84 10.74 55.60 0.60 -13.24 16 11 Si 0.93 15.23 29.58 -169.99 -5.03 10.21 16 12 H -0.26 -4.23 7.11 56.52 0.40 -3.83 16 13 H -0.27 -4.36 7.11 56.52 0.40 -3.96 16 14 H -0.25 -4.15 7.11 56.52 0.40 -3.75 16 15 N -0.63 -12.34 3.35 -9.60 -0.03 -12.37 16 16 C 0.51 9.81 5.69 -154.81 -0.88 8.93 16 17 N -0.53 -10.32 8.70 -12.27 -0.11 -10.43 16 18 C 0.17 2.72 11.13 -17.55 -0.20 2.52 16 19 C -0.25 -3.78 10.13 -39.36 -0.40 -4.18 16 20 C 0.12 2.06 7.49 -38.27 -0.29 1.78 16 21 O -0.20 -2.98 10.57 4.78 0.05 -2.93 16 22 C -0.04 -0.45 11.97 29.27 0.35 -0.10 16 23 C -0.16 -2.41 10.98 -37.70 -0.41 -2.82 16 24 C -0.24 -4.30 6.31 -105.04 -0.66 -4.96 16 25 H 0.30 5.28 8.29 -40.82 -0.34 4.94 16 26 H 0.41 7.59 8.65 -40.82 -0.35 7.23 16 27 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 293.93 15.07 4.43 4.43 Total: -1.00 -26.72 293.93 -4.68 -31.40 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -1.54 Total: 8.07 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -4.59 Total: 9.14 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 2.01 Total: -60.31 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.05 Total: -2.93 kcal Atomic # 14 Polarization: 15.23 SS G_CDS: -5.03 Total: 10.21 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.72 -4.68 -31.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210786.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.938 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds