Wall clock time and date at job start Tue Mar 31 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43199 * 119.99963 * 309.39422 * 3 2 1 5 5 N 3.51031 * 140.68661 * 309.39827 * 2 1 3 6 6 C 1.41154 * 119.99698 * 129.40286 * 3 2 1 7 7 C 1.38968 * 119.99991 * 5.60517 * 6 3 2 8 8 H 1.08001 * 120.00552 * 341.49259 * 7 6 3 9 9 C 1.40856 * 120.00015 * 161.49295 * 7 6 3 10 10 N 1.30327 * 119.99796 * 350.66276 * 9 7 6 11 11 Si 1.86796 * 120.00260 * 170.66386 * 9 7 6 12 12 H 1.48504 * 109.46906 * 90.00183 * 11 9 7 13 13 H 1.48501 * 109.47247 * 209.99715 * 11 9 7 14 14 H 1.48497 * 109.47296 * 330.00282 * 11 9 7 15 15 N 1.38376 * 119.99509 * 185.60908 * 6 3 2 16 16 C 1.38932 * 120.00014 * 120.16465 * 15 6 3 17 17 N 1.32381 * 120.02649 * 356.69259 * 16 15 6 18 18 C 1.32300 * 121.99520 * 180.02562 * 17 16 15 19 19 C 1.37695 * 121.60860 * 0.04330 * 18 17 16 20 20 C 1.39365 * 119.08482 * 359.97438 * 19 18 17 21 21 O 1.34371 * 134.55892 * 180.34491 * 20 19 18 22 22 C 1.34576 * 110.87014 * 180.12425 * 21 20 19 23 23 C 1.34081 * 110.10797 * 359.54809 * 22 21 20 24 24 C 1.39909 * 120.02965 * 176.74337 * 16 15 6 25 25 H 0.96998 * 120.00307 * 185.05297 * 10 9 7 26 26 H 0.96995 * 119.99685 * 300.15905 * 15 6 3 27 27 H 1.08002 * 119.19435 * 180.02562 * 18 17 16 28 28 H 1.08004 * 120.46066 * 179.97438 * 19 18 17 29 29 H 1.08000 * 124.95252 * 179.81346 * 22 21 20 30 30 H 1.08000 * 126.92236 * 180.24139 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.7861 0.9584 5 7 3.8519 -1.4116 1.7186 6 6 3.2734 0.7769 -0.9446 7 6 2.5831 1.6296 -1.7977 8 1 1.5237 1.4928 -1.9570 9 6 3.2651 2.6723 -2.4547 10 7 4.4952 2.9535 -2.1285 11 14 2.4065 3.6521 -3.7934 12 1 1.7169 4.8193 -3.1874 13 1 3.4098 4.1272 -4.7798 14 1 1.4104 2.7888 -4.4771 15 7 4.6522 0.6888 -1.0211 16 6 5.2578 0.2830 -2.2039 17 7 4.5150 -0.0823 -3.2370 18 6 5.0504 -0.4758 -4.3810 19 6 6.4148 -0.5276 -4.5592 20 6 7.2500 -0.1555 -3.5074 21 8 8.5814 -0.0818 -3.3415 22 6 8.8872 0.3452 -2.1024 23 6 7.7658 0.5792 -1.4057 24 6 6.6531 0.2590 -2.3037 25 1 4.9404 3.7171 -2.5279 26 1 5.1959 0.9105 -0.2491 27 1 4.4015 -0.7636 -5.1949 28 1 6.8321 -0.8522 -5.5010 29 1 9.8898 0.4837 -1.7256 30 1 7.6965 0.9325 -0.3874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158210786.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:33 Heat of formation + Delta-G solvation = 90.637251 kcal Electronic energy + Delta-G solvation = -20558.474172 eV Core-core repulsion = 17319.984249 eV Total energy + Delta-G solvation = -3238.489923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.37073 -40.35148 -38.47879 -36.91370 -36.50594 -35.15220 -33.65059 -32.43421 -31.54411 -29.33294 -28.74700 -24.84831 -23.99241 -23.05788 -21.98930 -20.51192 -19.38214 -18.93859 -18.14929 -17.80176 -17.05343 -16.92345 -16.79511 -15.79786 -15.36938 -14.86523 -14.62464 -14.49641 -14.28958 -14.23617 -13.87879 -13.60408 -13.43391 -13.36302 -13.18059 -13.09965 -12.72022 -12.65926 -12.48877 -12.10147 -11.62986 -11.49208 -10.65093 -10.32131 -10.10730 -9.61769 -9.13993 -8.18698 -7.07366 0.12046 0.48451 0.84354 1.36254 1.48881 1.53310 1.57393 1.91218 2.04641 2.09344 2.23610 2.27929 2.61268 2.73003 3.12856 3.45860 3.61903 3.84025 3.85864 4.06453 4.29864 4.34529 4.63646 4.67634 4.70330 4.80187 4.99228 5.18548 5.41404 5.47558 5.54741 5.78657 6.03912 6.17683 6.24722 6.61434 6.77910 7.21030 7.36002 7.53144 7.73001 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.008183 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.236675 B = 3420.848185 C = 4604.512191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C 0.331 3.669 3 C -0.334 4.334 4 C 0.316 3.684 5 N -0.561 5.561 6 C 0.376 3.624 7 C -0.342 4.342 8 H 0.100 0.900 9 C 0.054 3.946 10 N -0.724 5.724 11 Si 0.977 3.023 12 H -0.254 1.254 13 H -0.260 1.260 14 H -0.254 1.254 15 N -0.631 5.631 16 C 0.484 3.516 17 N -0.563 5.563 18 C 0.154 3.846 19 C -0.235 4.235 20 C 0.102 3.898 21 O -0.199 6.199 22 C -0.009 4.009 23 C -0.194 4.194 24 C -0.259 4.259 25 H 0.309 0.691 26 H 0.409 0.591 27 H 0.190 0.810 28 H 0.161 0.839 29 H 0.252 0.748 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.439 4.117 -9.291 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.244 5.244 2 C 0.025 3.975 3 C -0.353 4.353 4 C 0.011 3.989 5 N -0.245 5.245 6 C 0.271 3.729 7 C -0.369 4.369 8 H 0.118 0.882 9 C -0.177 4.177 10 N -0.342 5.342 11 Si 0.796 3.204 12 H -0.178 1.178 13 H -0.184 1.184 14 H -0.177 1.177 15 N -0.254 5.254 16 C 0.244 3.756 17 N -0.283 5.283 18 C 0.000 4.000 19 C -0.259 4.259 20 C 0.047 3.953 21 O -0.099 6.099 22 C -0.073 4.073 23 C -0.214 4.214 24 C -0.266 4.266 25 H 0.121 0.879 26 H 0.246 0.754 27 H 0.207 0.793 28 H 0.179 0.821 29 H 0.268 0.732 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.997 3.205 -8.316 13.393 hybrid contribution 0.850 0.751 -0.064 1.136 sum 10.847 3.956 -8.380 14.267 Atomic orbital electron populations 1.81027 1.12675 1.16346 1.14366 1.24844 0.91489 0.90447 0.90743 1.12927 0.82654 1.26299 1.13427 1.25312 0.92114 0.90449 0.91012 1.81051 1.10503 1.17139 1.15782 1.16626 0.80792 0.86573 0.88866 1.20353 0.97498 1.04107 1.14907 0.88195 1.27011 0.94814 0.98016 0.97866 1.69473 1.10710 1.21526 1.32481 0.85185 0.79477 0.78495 0.77239 1.17813 1.18366 1.17705 1.41163 1.04521 1.68376 1.11305 1.17533 0.85465 0.86518 0.86101 1.67444 1.39528 1.20459 1.00916 1.22736 0.92049 0.91445 0.93730 1.20857 0.92200 1.13477 0.99330 1.19834 0.81856 0.97957 0.95647 1.83915 1.21413 1.70991 1.33574 1.24640 1.01338 1.00387 0.80905 1.22558 0.90309 1.07210 1.01346 1.20356 0.93689 1.14573 0.98002 0.87850 0.75357 0.79322 0.82141 0.73234 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.57 18.54 19.00 0.35 -27.22 16 2 C 0.33 15.82 13.88 88.33 1.23 17.04 16 3 C -0.33 -15.29 5.88 -20.07 -0.12 -15.41 16 4 C 0.32 14.83 14.80 88.33 1.31 16.14 16 5 N -0.56 -27.00 18.54 19.01 0.35 -26.65 16 6 C 0.38 16.22 5.52 39.00 0.22 16.43 16 7 C -0.34 -14.39 7.86 23.09 0.18 -14.21 16 8 H 0.10 4.36 6.96 -2.91 -0.02 4.34 16 9 C 0.05 2.02 4.82 85.56 0.41 2.43 16 10 N -0.72 -26.84 10.74 21.98 0.24 -26.61 16 11 Si 0.98 29.93 29.58 68.60 2.03 31.96 16 12 H -0.25 -7.58 7.11 99.48 0.71 -6.87 16 13 H -0.26 -7.57 7.11 99.48 0.71 -6.86 16 14 H -0.25 -8.07 7.11 99.48 0.71 -7.37 16 15 N -0.63 -25.09 3.35 -184.27 -0.62 -25.71 16 16 C 0.48 18.61 5.69 133.28 0.76 19.36 16 17 N -0.56 -21.51 8.70 -192.75 -1.68 -23.19 16 18 C 0.15 4.66 11.13 84.49 0.94 5.60 16 19 C -0.23 -6.58 10.13 22.41 0.23 -6.36 16 20 C 0.10 3.22 7.49 23.12 0.17 3.39 16 21 O -0.20 -5.49 10.57 -5.82 -0.06 -5.55 16 22 C -0.01 -0.20 11.97 66.87 0.80 0.60 16 23 C -0.19 -5.37 10.98 23.49 0.26 -5.11 16 24 C -0.26 -8.92 6.31 -20.13 -0.13 -9.05 16 25 H 0.31 10.38 8.29 -92.71 -0.77 9.61 16 26 H 0.41 15.50 8.65 -92.71 -0.80 14.70 16 27 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.25 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -57.54 293.93 7.30 -50.24 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.44 Total: 21.87 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 6.25 Total: 30.86 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -1.35 Total: -129.38 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.06 Total: -5.55 kcal Atomic # 14 Polarization: 29.93 SS G_CDS: 2.03 Total: 31.96 kcal Total: -57.54 7.30 -50.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210786.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.876 kcal (2) G-P(sol) polarization free energy of solvation -57.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds