Wall clock time and date at job start Tue Mar 31 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86794 * 119.99922 * 2 1 4 4 H 1.48503 * 109.46941 * 270.00150 * 3 2 1 5 5 H 1.48504 * 109.47401 * 30.00007 * 3 2 1 6 6 H 1.48494 * 109.47146 * 150.00348 * 3 2 1 7 7 C 1.39866 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00118 * 194.14946 * 7 2 1 9 9 C 1.41199 * 119.99593 * 14.15262 * 7 2 1 10 10 C 1.40789 * 120.56208 * 208.02174 * 9 7 2 11 11 N 1.31467 * 120.39246 * 179.97438 * 10 9 7 12 12 C 1.32749 * 121.73846 * 0.02562 * 11 10 9 13 13 N 1.38410 * 119.43948 * 179.97438 * 12 11 10 14 14 C 1.48340 * 110.99898 * 345.46431 * 13 12 11 15 15 C 1.56005 * 104.99088 * 122.92436 * 14 13 12 16 16 H 1.08999 * 116.12591 * 159.60385 * 15 14 13 17 17 C 1.57061 * 99.74038 * 32.88926 * 15 14 13 18 18 C 1.49792 * 111.00306 * 102.66745 * 13 12 11 19 19 H 1.09006 * 116.41182 * 74.05458 * 18 13 12 20 20 C 1.56104 * 103.75481 * 304.61585 * 18 13 12 21 21 O 1.44115 * 105.40305 * 288.51768 * 20 18 13 22 22 C 1.39794 * 121.12475 * 359.97438 * 12 11 10 23 23 Cl 1.73604 * 120.26166 * 180.02562 * 22 12 11 24 24 C 1.36670 * 119.47090 * 0.02562 * 22 12 11 25 25 H 0.96993 * 120.00029 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.80516 * 0.25613 * 10 9 7 27 27 H 1.08997 * 110.33870 * 241.80319 * 14 13 12 28 28 H 1.09001 * 110.33556 * 4.04363 * 14 13 12 29 29 H 1.08998 * 112.44630 * 63.60231 * 17 15 14 30 30 H 1.09009 * 112.44706 * 191.25834 * 17 15 14 31 31 H 1.09000 * 110.26022 * 169.54270 * 20 18 13 32 32 H 1.08995 * 110.26056 * 47.50004 * 20 18 13 33 33 H 1.08003 * 120.79493 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4401 0.6999 7 6 2.0084 -1.2113 0.0005 8 1 3.0638 -1.2254 0.2292 9 6 1.3345 -2.4156 -0.2979 10 6 1.7849 -3.6388 0.2341 11 7 1.1546 -4.7581 -0.0456 12 6 0.0839 -4.7794 -0.8300 13 7 -0.5427 -5.9851 -1.0934 14 6 0.3200 -7.1281 -0.7064 15 6 -0.5319 -7.9510 0.3089 16 1 -0.2361 -8.9903 0.4523 17 6 -1.9663 -7.6912 -0.2757 18 6 -1.7931 -6.1290 -0.2812 19 1 -2.6471 -5.5287 -0.5953 20 6 -1.3055 -5.9331 1.1887 21 8 -0.5580 -7.1236 1.5060 22 6 -0.4217 -3.6047 -1.3946 23 17 -1.8238 -3.6583 -2.4168 24 6 0.1968 -2.4138 -1.1355 25 1 -0.4850 0.8400 0.0004 26 1 2.6507 -3.6572 0.8795 27 1 0.5590 -7.7350 -1.5797 28 1 1.2334 -6.7697 -0.2317 29 1 -2.0873 -8.1002 -1.2788 30 1 -2.7567 -8.0201 0.3992 31 1 -2.1590 -5.8335 1.8594 32 1 -0.6642 -5.0546 1.2598 33 1 -0.1754 -1.4934 -1.5608 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166755261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:15 Heat of formation + Delta-G solvation = 21.526039 kcal Electronic energy + Delta-G solvation = -20099.509009 eV Core-core repulsion = 16959.129693 eV Total energy + Delta-G solvation = -3140.379316 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98882 -38.34847 -35.52764 -34.89933 -33.71127 -30.95223 -30.58500 -29.44837 -28.62372 -25.25567 -24.38965 -22.04032 -21.55933 -20.90251 -19.34709 -17.62599 -16.99522 -16.46273 -15.65420 -15.47311 -14.86941 -14.44160 -14.28412 -13.28766 -13.12299 -12.56142 -12.30037 -12.18191 -12.02397 -11.85285 -11.72248 -11.49187 -11.42627 -11.18587 -11.14701 -10.94308 -10.84859 -10.71587 -10.35207 -9.95819 -9.56657 -9.20031 -8.61137 -8.23163 -8.13388 -7.28393 -7.00674 -4.63867 2.27322 2.64676 2.94668 2.98030 2.98854 3.20288 3.73825 4.01861 4.24676 4.55521 4.59999 4.85621 5.11333 5.20074 5.32660 5.64436 5.76087 5.87816 5.91936 5.98038 6.04887 6.17344 6.36803 6.47469 6.52714 6.55939 6.78294 6.89649 6.97731 7.13238 7.14093 7.51462 7.66523 7.96130 8.20500 8.46164 8.48057 9.26915 9.90208 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.005832 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.464433 B = 4800.068359 C = 5328.827018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.441 4.441 8 H 0.088 0.912 9 C 0.068 3.932 10 C -0.004 4.004 11 N -0.468 5.468 12 C 0.149 3.851 13 N -0.442 5.442 14 C 0.006 3.994 15 C 0.051 3.949 16 H 0.132 0.868 17 C -0.154 4.154 18 C 0.035 3.965 19 H 0.128 0.872 20 C 0.019 3.981 21 O -0.375 6.375 22 C -0.030 4.030 23 Cl -0.101 7.101 24 C -0.119 4.119 25 H 0.287 0.713 26 H 0.135 0.865 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -6.654 -1.067 7.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.471 4.471 8 H 0.106 0.894 9 C 0.063 3.937 10 C -0.167 4.167 11 N -0.179 5.179 12 C -0.081 4.081 13 N -0.163 5.163 14 C -0.122 4.122 15 C -0.007 4.007 16 H 0.150 0.850 17 C -0.192 4.192 18 C -0.072 4.072 19 H 0.145 0.855 20 C -0.059 4.059 21 O -0.294 6.294 22 C -0.061 4.061 23 Cl -0.073 7.073 24 C -0.145 4.145 25 H 0.098 0.902 26 H 0.152 0.848 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.059 -7.322 -1.169 8.021 hybrid contribution -0.066 1.821 0.209 1.834 sum -3.125 -5.500 -0.960 6.398 Atomic orbital electron populations 1.69784 1.07667 1.30096 1.33459 1.26013 0.94911 1.01822 0.92038 0.86141 0.80384 0.79779 0.79570 1.19022 1.20055 1.18325 1.19536 0.97206 0.90275 1.40034 0.89398 1.18451 0.91571 0.93953 0.89736 1.22500 1.02622 0.87661 1.03883 1.67054 1.07898 1.31222 1.11688 1.18610 0.97126 0.89291 1.03056 1.62539 1.03793 1.00234 1.49707 1.23881 0.98710 0.91816 0.97798 1.24988 0.94874 0.95387 0.85440 0.85014 1.24262 0.97526 0.95305 1.02136 1.25113 0.94613 0.96221 0.91229 0.85475 1.24232 0.95937 0.89490 0.96195 1.89015 1.75093 1.31422 1.33870 1.20992 0.91687 0.94860 0.98519 1.98256 1.42099 1.98879 1.68051 1.21299 0.98227 0.95595 0.99412 0.90207 0.84800 0.90850 0.87734 0.89116 0.90068 0.92081 0.89607 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.82 11.01 55.54 0.61 -18.21 16 2 C 0.07 1.65 5.21 -17.34 -0.09 1.56 16 3 Si 0.92 17.26 29.58 -169.99 -5.03 12.23 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.44 -10.64 9.06 -37.85 -0.34 -10.98 16 8 H 0.09 2.00 7.88 -52.49 -0.41 1.59 16 9 C 0.07 1.68 5.55 -106.65 -0.59 1.09 16 10 C 0.00 -0.09 10.97 -16.74 -0.18 -0.27 16 11 N -0.47 -10.77 6.89 -11.75 -0.08 -10.85 16 12 C 0.15 3.30 4.46 -155.05 -0.69 2.61 16 13 N -0.44 -8.52 4.77 -155.94 -0.74 -9.26 16 14 C 0.01 0.10 6.16 -1.42 -0.01 0.09 16 15 C 0.05 0.77 5.95 -22.92 -0.14 0.63 16 16 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 17 C -0.15 -2.12 6.87 -22.26 -0.15 -2.28 16 18 C 0.04 0.60 4.77 -62.16 -0.30 0.31 16 19 H 0.13 2.14 7.37 -51.93 -0.38 1.76 16 20 C 0.02 0.36 6.77 38.82 0.26 0.63 16 21 O -0.37 -6.98 11.24 -35.23 -0.40 -7.37 16 22 C -0.03 -0.69 6.23 -39.57 -0.25 -0.93 16 23 Cl -0.10 -2.01 27.27 -51.86 -1.41 -3.42 16 24 C -0.12 -2.91 8.49 -38.99 -0.33 -3.24 16 25 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 26 H 0.13 2.91 8.06 -52.48 -0.42 2.49 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.10 2.09 6.03 -51.93 -0.31 1.78 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.91 5.62 -51.93 -0.29 1.62 16 33 H 0.14 3.45 6.39 -52.48 -0.34 3.12 16 LS Contribution 282.94 15.07 4.26 4.26 Total: -1.00 -26.07 282.94 -9.01 -35.08 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.41 Total: 8.33 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.81 Total: -10.79 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.21 Total: -38.32 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.40 Total: -7.37 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.41 Total: -3.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.07 -9.01 -35.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166755261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.602 kcal (2) G-P(sol) polarization free energy of solvation -26.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds