Wall clock time and date at job start Tue Mar 31 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86794 * 119.99922 * 2 1 4 4 H 1.48503 * 109.46941 * 270.00150 * 3 2 1 5 5 H 1.48504 * 109.47401 * 30.00007 * 3 2 1 6 6 H 1.48494 * 109.47146 * 150.00348 * 3 2 1 7 7 C 1.39866 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00118 * 194.14946 * 7 2 1 9 9 C 1.41199 * 119.99593 * 14.15262 * 7 2 1 10 10 C 1.40789 * 120.56208 * 208.02174 * 9 7 2 11 11 N 1.31467 * 120.39246 * 179.97438 * 10 9 7 12 12 C 1.32749 * 121.73846 * 0.02562 * 11 10 9 13 13 N 1.38410 * 119.43948 * 179.97438 * 12 11 10 14 14 C 1.48340 * 110.99898 * 345.46431 * 13 12 11 15 15 C 1.56005 * 104.99088 * 122.92436 * 14 13 12 16 16 H 1.08999 * 116.12591 * 159.60385 * 15 14 13 17 17 C 1.57061 * 99.74038 * 32.88926 * 15 14 13 18 18 C 1.49792 * 111.00306 * 102.66745 * 13 12 11 19 19 H 1.09006 * 116.41182 * 74.05458 * 18 13 12 20 20 C 1.56104 * 103.75481 * 304.61585 * 18 13 12 21 21 O 1.44115 * 105.40305 * 288.51768 * 20 18 13 22 22 C 1.39794 * 121.12475 * 359.97438 * 12 11 10 23 23 Cl 1.73604 * 120.26166 * 180.02562 * 22 12 11 24 24 C 1.36670 * 119.47090 * 0.02562 * 22 12 11 25 25 H 0.96993 * 120.00029 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.80516 * 0.25613 * 10 9 7 27 27 H 1.08997 * 110.33870 * 241.80319 * 14 13 12 28 28 H 1.09001 * 110.33556 * 4.04363 * 14 13 12 29 29 H 1.08998 * 112.44630 * 63.60231 * 17 15 14 30 30 H 1.09009 * 112.44706 * 191.25834 * 17 15 14 31 31 H 1.09000 * 110.26022 * 169.54270 * 20 18 13 32 32 H 1.08995 * 110.26056 * 47.50004 * 20 18 13 33 33 H 1.08003 * 120.79493 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4401 0.6999 7 6 2.0084 -1.2113 0.0005 8 1 3.0638 -1.2254 0.2292 9 6 1.3345 -2.4156 -0.2979 10 6 1.7849 -3.6388 0.2341 11 7 1.1546 -4.7581 -0.0456 12 6 0.0839 -4.7794 -0.8300 13 7 -0.5427 -5.9851 -1.0934 14 6 0.3200 -7.1281 -0.7064 15 6 -0.5319 -7.9510 0.3089 16 1 -0.2361 -8.9903 0.4523 17 6 -1.9663 -7.6912 -0.2757 18 6 -1.7931 -6.1290 -0.2812 19 1 -2.6471 -5.5287 -0.5953 20 6 -1.3055 -5.9331 1.1887 21 8 -0.5580 -7.1236 1.5060 22 6 -0.4217 -3.6047 -1.3946 23 17 -1.8238 -3.6583 -2.4168 24 6 0.1968 -2.4138 -1.1355 25 1 -0.4850 0.8400 0.0004 26 1 2.6507 -3.6572 0.8795 27 1 0.5590 -7.7350 -1.5797 28 1 1.2334 -6.7697 -0.2317 29 1 -2.0873 -8.1002 -1.2788 30 1 -2.7567 -8.0201 0.3992 31 1 -2.1590 -5.8335 1.8594 32 1 -0.6642 -5.0546 1.2598 33 1 -0.1754 -1.4934 -1.5608 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166755261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:15 Heat of formation + Delta-G solvation = 6.307421 kcal Electronic energy + Delta-G solvation = -20100.168938 eV Core-core repulsion = 16959.129693 eV Total energy + Delta-G solvation = -3141.039245 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42502 -40.05059 -37.23637 -36.52829 -35.33700 -32.63863 -32.22436 -30.83038 -30.21760 -26.90408 -25.93939 -23.74117 -23.25335 -22.20798 -20.81146 -19.42288 -18.46958 -17.91836 -17.30310 -17.00872 -16.51776 -16.01059 -15.89248 -14.90019 -14.73708 -14.18409 -13.86336 -13.67551 -13.55451 -13.37405 -13.13965 -13.04183 -12.90194 -12.74633 -12.53546 -12.40276 -12.28152 -12.19549 -11.94509 -11.65454 -11.25229 -10.70889 -10.24154 -10.03696 -9.81522 -8.97862 -8.73653 -6.47035 0.49927 0.81832 1.39680 1.43730 1.47791 1.53280 2.16402 2.54024 2.71792 3.04251 3.32091 3.45915 3.64005 3.82405 3.94436 4.08269 4.28881 4.47267 4.57525 4.65445 4.72218 4.79531 4.90184 4.96091 4.98493 4.99463 5.13575 5.19068 5.26829 5.59368 5.69959 5.79714 5.88165 6.20100 6.43828 6.67177 6.68465 7.46247 8.19460 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.005832 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.464433 B = 4800.068359 C = 5328.827018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.470 4.470 8 H 0.092 0.908 9 C 0.044 3.956 10 C -0.018 4.018 11 N -0.473 5.473 12 C 0.158 3.842 13 N -0.448 5.448 14 C -0.001 4.001 15 C 0.055 3.945 16 H 0.172 0.828 17 C -0.133 4.133 18 C 0.030 3.970 19 H 0.129 0.871 20 C 0.020 3.980 21 O -0.395 6.395 22 C -0.043 4.043 23 Cl -0.075 7.075 24 C -0.133 4.133 25 H 0.294 0.706 26 H 0.143 0.857 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 -7.929 -1.412 8.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.499 4.499 8 H 0.110 0.890 9 C 0.039 3.961 10 C -0.180 4.180 11 N -0.184 5.184 12 C -0.073 4.073 13 N -0.170 5.170 14 C -0.128 4.128 15 C -0.001 4.001 16 H 0.189 0.811 17 C -0.170 4.170 18 C -0.077 4.077 19 H 0.147 0.853 20 C -0.058 4.058 21 O -0.314 6.314 22 C -0.073 4.073 23 Cl -0.047 7.047 24 C -0.160 4.160 25 H 0.105 0.895 26 H 0.160 0.840 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.822 -8.621 -1.512 9.550 hybrid contribution 0.092 2.072 0.279 2.093 sum -3.730 -6.549 -1.233 7.636 Atomic orbital electron populations 1.69835 1.09081 1.31332 1.34013 1.26845 0.95566 1.04803 0.90962 0.85070 0.79066 0.75293 0.79615 1.18636 1.19350 1.17788 1.19797 0.97622 0.91025 1.41435 0.88979 1.18725 0.92226 0.94750 0.90409 1.22684 1.03182 0.87783 1.04325 1.67158 1.08433 1.30920 1.11902 1.18926 0.96465 0.90377 1.01492 1.62543 1.04673 0.99517 1.50217 1.23974 0.97745 0.91748 0.99372 1.25369 0.95188 0.96170 0.83414 0.81126 1.24254 0.97209 0.91769 1.03803 1.25255 0.93482 0.99361 0.89611 0.85291 1.24089 0.95503 0.88358 0.97824 1.89000 1.75244 1.31548 1.35631 1.21115 0.92537 0.94697 0.98975 1.98246 1.40487 1.98840 1.67132 1.21241 0.98899 0.95733 1.00111 0.89536 0.83980 0.88674 0.90655 0.87072 0.87653 0.90477 0.93942 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.11 11.01 21.82 0.24 -39.87 16 2 C 0.03 1.63 5.21 85.22 0.44 2.07 16 3 Si 0.99 35.46 29.58 68.60 2.03 37.48 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 6 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 7 C -0.47 -23.39 9.06 23.39 0.21 -23.17 16 8 H 0.09 4.33 7.88 -2.91 -0.02 4.30 16 9 C 0.04 2.26 5.55 -21.18 -0.12 2.14 16 10 C -0.02 -0.86 10.97 85.37 0.94 0.08 16 11 N -0.47 -22.35 6.89 -191.08 -1.32 -23.67 16 12 C 0.16 7.07 4.46 133.32 0.59 7.66 16 13 N -0.45 -16.73 4.77 -647.29 -3.09 -19.82 16 14 C 0.00 -0.03 6.16 87.07 0.54 0.51 16 15 C 0.06 1.48 5.95 33.06 0.20 1.68 16 16 H 0.17 3.23 8.14 -2.39 -0.02 3.21 16 17 C -0.13 -3.10 6.87 33.49 0.23 -2.87 16 18 C 0.03 0.96 4.77 46.90 0.22 1.18 16 19 H 0.13 4.10 7.37 -2.38 -0.02 4.08 16 20 C 0.02 0.75 6.77 73.06 0.49 1.24 16 21 O -0.39 -14.03 11.24 -148.98 -1.67 -15.71 16 22 C -0.04 -1.98 6.23 22.28 0.14 -1.84 16 23 Cl -0.08 -2.96 27.27 -2.72 -0.07 -3.04 16 24 C -0.13 -6.75 8.49 22.65 0.19 -6.55 16 25 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 26 H 0.14 6.47 8.06 -2.91 -0.02 6.45 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.08 2.99 6.03 -2.39 -0.01 2.97 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.04 1.93 5.62 -2.39 -0.01 1.92 16 33 H 0.12 6.49 6.39 -2.91 -0.02 6.48 16 Total: -1.00 -57.89 282.94 1.34 -56.55 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.14 Total: 25.95 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 4.08 Total: -17.87 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -4.17 Total: -83.37 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.67 Total: -15.71 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.48 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.07 Total: -3.04 kcal Total: -57.89 1.34 -56.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166755261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.856 kcal (2) G-P(sol) polarization free energy of solvation -57.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds