Wall clock time and date at job start Tue Mar 31 2020 01:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 120.00103 * 2 1 4 4 H 1.48495 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.46756 * 300.00176 * 3 2 1 6 6 H 1.48502 * 109.47078 * 59.99453 * 3 2 1 7 7 C 1.39865 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 197.64571 * 7 2 1 9 9 C 1.41198 * 119.99497 * 17.64829 * 7 2 1 10 10 C 1.40795 * 120.55991 * 203.66162 * 9 7 2 11 11 N 1.31473 * 120.38405 * 179.72200 * 10 9 7 12 12 C 1.32749 * 121.74119 * 0.52881 * 11 10 9 13 13 N 1.38409 * 119.43198 * 179.74848 * 12 11 10 14 14 C 1.48099 * 111.00543 * 359.72426 * 13 12 11 15 15 C 1.53205 * 85.93402 * 222.90574 * 14 13 12 16 16 C 1.52625 * 120.92859 * 258.57902 * 15 14 13 17 17 C 1.53499 * 81.00087 * 207.53142 * 16 15 14 18 18 O 1.42509 * 121.07504 * 148.26056 * 15 14 13 19 19 C 1.48103 * 110.99936 * 260.17354 * 13 12 11 20 20 C 1.39781 * 121.12439 * 359.47033 * 12 11 10 21 21 Cl 1.73607 * 120.26137 * 180.27919 * 20 12 11 22 22 C 1.36665 * 119.47611 * 0.25591 * 20 12 11 23 23 H 0.96996 * 120.00053 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.81031 * 0.02562 * 10 9 7 25 25 H 1.09010 * 113.79784 * 108.64999 * 14 13 12 26 26 H 1.09005 * 113.90820 * 337.17537 * 14 13 12 27 27 H 1.08990 * 114.60850 * 320.56136 * 16 15 14 28 28 H 1.09005 * 114.60504 * 94.46242 * 16 15 14 29 29 H 1.09001 * 113.35854 * 270.75389 * 17 16 15 30 30 H 1.09001 * 113.34970 * 140.68243 * 17 16 15 31 31 H 1.09000 * 113.80192 * 22.84712 * 19 13 12 32 32 H 1.09000 * 113.80449 * 251.35403 * 19 13 12 33 33 H 1.08001 * 120.79985 * 179.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2126 6 1 1.8842 2.3965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0503 -1.2331 0.2841 9 6 1.3522 -2.4054 -0.3697 10 6 1.8308 -3.6526 0.0749 11 7 1.2139 -4.7620 -0.2674 12 6 0.1368 -4.7513 -1.0433 13 7 -0.4720 -5.9484 -1.3784 14 6 0.2433 -7.0953 -0.7733 15 6 0.0586 -7.7853 -2.1286 16 6 -1.0309 -8.8345 -2.3328 17 6 -0.0258 -9.3242 -3.3845 18 8 1.0231 -8.7124 -2.6196 19 6 -0.0729 -6.3849 -2.7362 20 6 -0.3963 -3.5515 -1.5229 21 17 -1.8101 -3.5631 -2.5303 22 6 0.2041 -2.3691 -1.1922 23 1 -0.4850 0.8400 -0.0004 24 1 2.7068 -3.6980 0.7048 25 1 -0.3012 -7.5731 0.0414 26 1 1.2837 -6.8857 -0.5245 27 1 -1.1726 -9.5115 -1.4905 28 1 -1.9639 -8.4464 -2.7416 29 1 -0.1687 -8.8681 -4.3641 30 1 0.0527 -10.4103 -3.4342 31 1 0.8729 -5.9615 -3.0742 32 1 -0.8679 -6.2998 -3.4771 33 1 -0.1895 -1.4297 -1.5512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166942616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:13 Heat of formation + Delta-G solvation = 58.788586 kcal Electronic energy + Delta-G solvation = -19388.066091 eV Core-core repulsion = 16249.302600 eV Total energy + Delta-G solvation = -3138.763491 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39239 -39.07863 -36.97582 -35.51693 -34.13704 -30.79318 -30.41676 -29.49289 -27.30507 -26.01952 -24.54693 -22.87562 -21.67741 -20.71780 -18.72432 -17.65622 -17.11273 -16.14019 -16.00344 -15.75348 -15.17086 -14.34516 -14.20340 -14.12655 -13.49295 -13.00579 -12.69524 -12.46281 -12.17823 -12.06644 -11.79971 -11.61867 -11.41121 -11.15930 -10.98663 -10.84361 -10.79986 -10.43875 -10.15099 -9.89763 -9.58647 -9.46034 -9.00909 -8.42805 -8.24008 -7.44286 -7.04234 -4.65607 2.26504 2.64586 2.92832 2.95519 2.99256 3.20598 3.71060 3.91069 4.22063 4.24273 4.49356 4.58068 5.07912 5.15606 5.28583 5.36223 5.62894 5.75629 5.76220 5.88733 5.96971 6.03991 6.13898 6.18626 6.43191 6.51218 6.56670 6.70171 6.78430 6.90181 7.01375 7.48794 7.64586 7.91820 8.17454 8.43388 8.44894 9.25954 9.84210 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.004712 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.212807 B = 5940.240354 C = 6489.669924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.436 4.436 8 H 0.090 0.910 9 C 0.068 3.932 10 C -0.009 4.009 11 N -0.468 5.468 12 C 0.120 3.880 13 N -0.403 5.403 14 C 0.029 3.971 15 C 0.049 3.951 16 C -0.154 4.154 17 C 0.028 3.972 18 O -0.358 6.358 19 C 0.017 3.983 20 C -0.026 4.026 21 Cl -0.101 7.101 22 C -0.126 4.126 23 H 0.288 0.712 24 H 0.135 0.865 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 -7.810 -4.708 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.108 0.892 9 C 0.063 3.937 10 C -0.172 4.172 11 N -0.179 5.179 12 C -0.110 4.110 13 N -0.124 5.124 14 C -0.099 4.099 15 C 0.009 3.991 16 C -0.191 4.191 17 C -0.049 4.049 18 O -0.275 6.275 19 C -0.111 4.111 20 C -0.056 4.056 21 Cl -0.072 7.072 22 C -0.152 4.152 23 H 0.099 0.901 24 H 0.153 0.847 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.204 -8.381 -4.308 9.678 hybrid contribution 0.494 1.722 -0.438 1.844 sum -1.710 -6.660 -4.746 8.355 Atomic orbital electron populations 1.69812 1.07795 1.30175 1.32291 1.26058 0.94858 1.01996 0.91953 0.86121 0.80975 0.80073 0.78916 1.18029 1.19382 1.19618 1.19603 0.98400 0.90700 1.37819 0.89243 1.18456 0.91516 0.93916 0.89830 1.22379 1.02328 0.87475 1.05012 1.66987 1.06178 1.32533 1.12206 1.19003 0.95718 0.89769 1.06513 1.65991 1.43546 0.99418 1.03426 1.23864 1.01448 0.89799 0.94831 1.23958 0.87705 0.90223 0.97223 1.23941 0.98442 0.97183 0.99548 1.23524 0.86608 0.99173 0.95619 1.89810 1.29274 1.46252 1.62191 1.24163 1.00880 0.91962 0.94099 1.20945 0.90750 0.94701 0.99190 1.98257 1.41365 1.98968 1.68642 1.21347 0.98364 0.96033 0.99495 0.90109 0.84716 0.89424 0.87849 0.88199 0.89666 0.90477 0.89880 0.90551 0.89092 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.63 10.92 55.54 0.61 -18.02 16 2 C 0.07 1.65 5.17 -17.34 -0.09 1.56 16 3 Si 0.92 17.08 29.59 -169.99 -5.03 12.05 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.44 -10.53 9.06 -37.85 -0.34 -10.87 16 8 H 0.09 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.07 1.70 5.59 -106.65 -0.60 1.10 16 10 C -0.01 -0.20 10.97 -16.74 -0.18 -0.39 16 11 N -0.47 -11.01 8.15 -11.75 -0.10 -11.11 16 12 C 0.12 2.74 5.89 -155.05 -0.91 1.82 16 13 N -0.40 -7.95 5.69 -181.34 -1.03 -8.98 16 14 C 0.03 0.52 7.51 -3.06 -0.02 0.50 16 15 C 0.05 0.77 1.73 -105.18 -0.18 0.59 16 16 C -0.15 -1.83 8.41 -26.66 -0.22 -2.06 16 17 C 0.03 0.32 8.73 22.93 0.20 0.52 16 18 O -0.36 -5.71 12.75 -35.23 -0.45 -6.16 16 19 C 0.02 0.29 7.28 -3.05 -0.02 0.27 16 20 C -0.03 -0.60 6.25 -39.57 -0.25 -0.84 16 21 Cl -0.10 -2.04 28.01 -51.86 -1.45 -3.49 16 22 C -0.13 -3.13 8.52 -39.00 -0.33 -3.46 16 23 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 24 H 0.14 2.92 8.06 -52.49 -0.42 2.50 16 25 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 26 H 0.10 2.06 6.65 -51.93 -0.35 1.71 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.44 7.91 -51.93 -0.41 1.03 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.14 3.55 6.19 -52.49 -0.32 3.23 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -26.59 295.42 -9.55 -36.14 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.59 Total: 6.38 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.96 Total: -11.26 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.52 Total: -38.11 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.45 Total: -6.16 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -1.45 Total: -3.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.59 -9.55 -36.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166942616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.927 kcal (2) G-P(sol) polarization free energy of solvation -26.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds