Wall clock time and date at job start Tue Mar 31 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 120.00103 * 2 1 4 4 H 1.48495 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.46756 * 300.00176 * 3 2 1 6 6 H 1.48502 * 109.47078 * 59.99453 * 3 2 1 7 7 C 1.39865 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 197.64571 * 7 2 1 9 9 C 1.41198 * 119.99497 * 17.64829 * 7 2 1 10 10 C 1.40795 * 120.55991 * 203.66162 * 9 7 2 11 11 N 1.31473 * 120.38405 * 179.72200 * 10 9 7 12 12 C 1.32749 * 121.74119 * 0.52881 * 11 10 9 13 13 N 1.38409 * 119.43198 * 179.74848 * 12 11 10 14 14 C 1.48099 * 111.00543 * 359.72426 * 13 12 11 15 15 C 1.53205 * 85.93402 * 222.90574 * 14 13 12 16 16 C 1.52625 * 120.92859 * 258.57902 * 15 14 13 17 17 C 1.53499 * 81.00087 * 207.53142 * 16 15 14 18 18 O 1.42509 * 121.07504 * 148.26056 * 15 14 13 19 19 C 1.48103 * 110.99936 * 260.17354 * 13 12 11 20 20 C 1.39781 * 121.12439 * 359.47033 * 12 11 10 21 21 Cl 1.73607 * 120.26137 * 180.27919 * 20 12 11 22 22 C 1.36665 * 119.47611 * 0.25591 * 20 12 11 23 23 H 0.96996 * 120.00053 * 0.02562 * 1 2 3 24 24 H 1.07995 * 119.81031 * 0.02562 * 10 9 7 25 25 H 1.09010 * 113.79784 * 108.64999 * 14 13 12 26 26 H 1.09005 * 113.90820 * 337.17537 * 14 13 12 27 27 H 1.08990 * 114.60850 * 320.56136 * 16 15 14 28 28 H 1.09005 * 114.60504 * 94.46242 * 16 15 14 29 29 H 1.09001 * 113.35854 * 270.75389 * 17 16 15 30 30 H 1.09001 * 113.34970 * 140.68243 * 17 16 15 31 31 H 1.09000 * 113.80192 * 22.84712 * 19 13 12 32 32 H 1.09000 * 113.80449 * 251.35403 * 19 13 12 33 33 H 1.08001 * 120.79985 * 179.97438 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2126 6 1 1.8842 2.3965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0503 -1.2331 0.2841 9 6 1.3522 -2.4054 -0.3697 10 6 1.8308 -3.6526 0.0749 11 7 1.2139 -4.7620 -0.2674 12 6 0.1368 -4.7513 -1.0433 13 7 -0.4720 -5.9484 -1.3784 14 6 0.2433 -7.0953 -0.7733 15 6 0.0586 -7.7853 -2.1286 16 6 -1.0309 -8.8345 -2.3328 17 6 -0.0258 -9.3242 -3.3845 18 8 1.0231 -8.7124 -2.6196 19 6 -0.0729 -6.3849 -2.7362 20 6 -0.3963 -3.5515 -1.5229 21 17 -1.8101 -3.5631 -2.5303 22 6 0.2041 -2.3691 -1.1922 23 1 -0.4850 0.8400 -0.0004 24 1 2.7068 -3.6980 0.7048 25 1 -0.3012 -7.5731 0.0414 26 1 1.2837 -6.8857 -0.5245 27 1 -1.1726 -9.5115 -1.4905 28 1 -1.9639 -8.4464 -2.7416 29 1 -0.1687 -8.8681 -4.3641 30 1 0.0527 -10.4103 -3.4342 31 1 0.8729 -5.9615 -3.0742 32 1 -0.8679 -6.2998 -3.4771 33 1 -0.1895 -1.4297 -1.5512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166942616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:12 Heat of formation + Delta-G solvation = 42.787202 kcal Electronic energy + Delta-G solvation = -19388.759963 eV Core-core repulsion = 16249.302600 eV Total energy + Delta-G solvation = -3139.457363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.66313 -40.68357 -38.51383 -37.25252 -35.89129 -32.58693 -32.09382 -30.67423 -28.85703 -27.45761 -26.14857 -24.25519 -23.37329 -22.31918 -19.92473 -19.45731 -18.64556 -17.66130 -17.19815 -17.10968 -16.78890 -16.03196 -15.70495 -15.56361 -14.99646 -14.57514 -14.16839 -13.93310 -13.76663 -13.52970 -13.31085 -13.21912 -12.95109 -12.68868 -12.53195 -12.35099 -11.99299 -11.86660 -11.65988 -11.34623 -11.27618 -10.67834 -10.60537 -10.25078 -10.05544 -9.21159 -8.78111 -6.49581 0.47174 0.79777 1.39177 1.40591 1.47150 1.55937 2.15093 2.50805 2.71162 3.08675 3.15647 3.34480 3.46999 3.80269 3.98346 4.29494 4.35139 4.46337 4.50602 4.58128 4.66946 4.74985 4.80480 4.90035 4.93572 5.03530 5.04276 5.10074 5.16849 5.30952 5.33332 5.67763 5.78488 6.15757 6.38219 6.62955 6.63272 7.42384 8.13659 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.004712 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.212807 B = 5940.240354 C = 6489.669924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.096 0.904 9 C 0.044 3.956 10 C -0.022 4.022 11 N -0.476 5.476 12 C 0.119 3.881 13 N -0.408 5.408 14 C 0.022 3.978 15 C 0.056 3.944 16 C -0.139 4.139 17 C 0.027 3.973 18 O -0.386 6.386 19 C 0.018 3.982 20 C -0.037 4.037 21 Cl -0.075 7.075 22 C -0.143 4.143 23 H 0.296 0.704 24 H 0.148 0.852 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -8.510 -5.381 10.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.490 4.490 8 H 0.114 0.886 9 C 0.039 3.961 10 C -0.185 4.185 11 N -0.187 5.187 12 C -0.112 4.112 13 N -0.130 5.130 14 C -0.106 4.106 15 C 0.015 3.985 16 C -0.176 4.176 17 C -0.049 4.049 18 O -0.304 6.304 19 C -0.110 4.110 20 C -0.068 4.068 21 Cl -0.047 7.047 22 C -0.169 4.169 23 H 0.107 0.893 24 H 0.166 0.834 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.764 -9.109 -4.986 10.746 hybrid contribution 0.597 1.833 -0.271 1.947 sum -2.167 -7.276 -5.258 9.234 Atomic orbital electron populations 1.69852 1.09289 1.31598 1.32533 1.26919 0.95491 1.05038 0.90798 0.85023 0.79584 0.75369 0.79062 1.17552 1.18894 1.18911 1.19899 0.98905 0.91387 1.38802 0.88589 1.18753 0.92103 0.94791 0.90459 1.22637 1.02997 0.87437 1.05431 1.67074 1.06581 1.32392 1.12656 1.19368 0.95218 0.90957 1.05608 1.65957 1.43327 0.98661 1.05027 1.23884 1.00055 0.89803 0.96905 1.23898 0.89768 0.90192 0.94609 1.23965 0.97993 0.95414 1.00198 1.23796 0.84735 1.00796 0.95598 1.89798 1.30984 1.46506 1.63109 1.24136 1.00377 0.93243 0.93221 1.21071 0.91624 0.94538 0.99534 1.98247 1.39730 1.98938 1.67744 1.21318 0.99098 0.96117 1.00392 0.89264 0.83422 0.88092 0.90290 0.86623 0.88230 0.89208 0.87198 0.92795 0.87228 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.22 10.92 21.82 0.24 -38.98 16 2 C 0.04 1.63 5.17 85.23 0.44 2.07 16 3 Si 0.99 34.63 29.59 68.60 2.03 36.66 16 4 H -0.25 -8.56 7.11 99.48 0.71 -7.86 16 5 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 6 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.46 -22.69 9.06 23.39 0.21 -22.48 16 8 H 0.10 4.42 7.90 -2.91 -0.02 4.40 16 9 C 0.04 2.27 5.59 -21.18 -0.12 2.15 16 10 C -0.02 -1.09 10.97 85.37 0.94 -0.15 16 11 N -0.48 -22.91 8.15 -191.09 -1.56 -24.47 16 12 C 0.12 5.49 5.89 133.32 0.79 6.27 16 13 N -0.41 -15.92 5.69 -732.43 -4.17 -20.09 16 14 C 0.02 0.78 7.51 86.14 0.65 1.42 16 15 C 0.06 1.66 1.73 -20.13 -0.03 1.63 16 16 C -0.14 -2.83 8.41 30.64 0.26 -2.57 16 17 C 0.03 0.53 8.73 62.76 0.55 1.07 16 18 O -0.39 -11.66 12.75 -148.98 -1.90 -13.56 16 19 C 0.02 0.61 7.28 86.14 0.63 1.24 16 20 C -0.04 -1.76 6.25 22.27 0.14 -1.63 16 21 Cl -0.08 -3.01 28.01 -2.72 -0.08 -3.08 16 22 C -0.14 -7.29 8.52 22.65 0.19 -7.09 16 23 H 0.30 12.87 8.30 -92.71 -0.77 12.10 16 24 H 0.15 6.59 8.06 -2.91 -0.02 6.57 16 25 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 26 H 0.08 3.20 6.65 -2.38 -0.02 3.19 16 27 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 2.06 7.91 -2.39 -0.02 2.04 16 32 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.13 6.73 6.19 -2.91 -0.02 6.71 16 Total: -1.00 -57.96 295.42 0.34 -57.62 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.14 Total: 23.97 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 4.63 Total: -18.07 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -5.48 Total: -83.54 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.90 Total: -13.56 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -0.08 Total: -3.08 kcal Total: -57.96 0.34 -57.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166942616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.412 kcal (2) G-P(sol) polarization free energy of solvation -57.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds