Wall clock time and date at job start Tue Mar 31 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43200 * 119.99857 * 287.02652 * 3 2 1 5 5 N 3.51036 * 140.68528 * 287.03762 * 2 1 3 6 6 C 1.41161 * 120.00108 * 107.03386 * 3 2 1 7 7 C 1.38993 * 119.99795 * 354.71308 * 6 3 2 8 8 H 1.08001 * 120.00215 * 18.37892 * 7 6 3 9 9 C 1.40838 * 119.99705 * 198.38471 * 7 6 3 10 10 N 1.30337 * 120.00097 * 9.41297 * 9 7 6 11 11 Si 1.86803 * 119.99920 * 189.41984 * 9 7 6 12 12 H 1.48506 * 109.46860 * 59.99398 * 11 9 7 13 13 H 1.48499 * 109.47374 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46918 * 300.00017 * 11 9 7 15 15 N 1.38311 * 119.99852 * 174.71623 * 6 3 2 16 16 C 1.39515 * 119.99691 * 241.49815 * 15 6 3 17 17 C 1.39514 * 119.78320 * 7.80410 * 16 15 6 18 18 C 1.36426 * 120.42876 * 180.02562 * 17 16 15 19 19 C 1.39811 * 119.89655 * 0.02562 * 18 17 16 20 20 C 1.46481 * 133.62423 * 179.97438 * 19 18 17 21 21 N 1.29791 * 107.44259 * 180.02562 * 20 19 18 22 22 O 1.41354 * 109.74850 * 359.97438 * 21 20 19 23 23 C 1.34857 * 109.31130 * 0.02562 * 22 21 20 24 24 C 1.38563 * 119.78167 * 187.83153 * 16 15 6 25 25 H 0.96998 * 119.99705 * 184.99002 * 10 9 7 26 26 H 0.96994 * 120.00358 * 61.49600 * 15 6 3 27 27 H 1.07997 * 119.78587 * 0.05240 * 17 16 15 28 28 H 1.08000 * 120.04806 * 180.02562 * 18 17 16 29 29 H 1.08003 * 126.27506 * 359.74976 * 20 19 18 30 30 H 1.07998 * 120.13346 * 359.95290 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2841 -0.3622 1.1858 5 7 3.8519 -0.6517 2.1265 6 6 3.2736 0.3591 -1.1689 7 6 2.5830 0.6046 -2.3498 8 1 1.5240 0.8150 -2.3223 9 6 3.2641 0.5788 -3.5822 10 7 4.4928 0.1478 -3.6389 11 14 2.4066 1.1627 -5.1357 12 1 2.0069 2.5840 -4.9761 13 1 3.3324 1.0358 -6.2898 14 1 1.1987 0.3329 -5.3759 15 7 4.6523 0.4659 -1.1389 16 6 5.2634 1.6883 -1.4193 17 6 4.4831 2.8351 -1.5684 18 6 5.0669 4.0372 -1.8432 19 6 6.4559 4.1229 -1.9773 20 6 7.3776 5.2250 -2.2626 21 7 8.5792 4.7345 -2.2732 22 8 8.5309 3.3468 -2.0082 23 6 7.2482 2.9714 -1.8286 24 6 6.6414 1.7552 -1.5485 25 1 4.9862 0.1974 -4.4725 26 1 5.1942 -0.3090 -0.9230 27 1 3.4100 2.7710 -1.4651 28 1 4.4569 4.9212 -1.9569 29 1 7.1065 6.2558 -2.4370 30 1 7.2408 0.8645 -1.4318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:27 Heat of formation + Delta-G solvation = 122.921583 kcal Electronic energy + Delta-G solvation = -20260.942017 eV Core-core repulsion = 17023.852047 eV Total energy + Delta-G solvation = -3237.089970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27702 -38.86489 -36.44456 -35.19774 -34.81657 -33.73181 -33.17819 -31.07244 -29.81676 -27.94766 -27.28066 -22.91817 -22.73641 -21.64546 -21.16653 -19.18366 -17.52436 -17.24759 -16.68606 -16.63600 -16.10722 -15.52200 -14.84450 -14.19500 -13.95738 -13.47171 -13.26946 -12.90790 -12.74174 -12.53889 -12.41051 -12.29534 -11.81470 -11.75493 -11.65603 -11.61476 -11.19740 -11.15601 -11.06108 -11.00127 -10.83027 -10.75149 -10.19910 -9.85229 -8.38371 -8.27194 -7.86076 -6.92614 -5.58794 1.10751 1.74892 2.03321 2.50599 2.62250 2.67474 2.77268 2.86748 3.29778 3.72963 3.83501 3.96444 4.08440 4.15124 4.28351 4.56468 4.74122 4.99491 5.05909 5.42929 5.49803 5.64449 5.69887 6.00680 6.07201 6.15817 6.22150 6.48852 6.52420 6.69368 6.85332 6.93739 7.17124 7.48571 7.57393 7.63187 8.07955 8.30018 8.85915 9.02012 9.06348 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.006950 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.908681 B = 4027.622384 C = 5157.101051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.324 3.676 3 C -0.310 4.310 4 C 0.308 3.692 5 N -0.530 5.530 6 C 0.373 3.627 7 C -0.371 4.371 8 H 0.112 0.888 9 C 0.071 3.929 10 N -0.714 5.714 11 Si 0.922 3.078 12 H -0.249 1.249 13 H -0.268 1.268 14 H -0.252 1.252 15 N -0.646 5.646 16 C 0.322 3.678 17 C -0.197 4.197 18 C -0.005 4.005 19 C -0.273 4.273 20 C 0.118 3.882 21 N -0.320 5.320 22 O -0.108 6.108 23 C 0.130 3.870 24 C -0.219 4.219 25 H 0.306 0.694 26 H 0.406 0.594 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.200 0.800 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 7.090 -6.881 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C 0.016 3.984 3 C -0.328 4.328 4 C 0.000 4.000 5 N -0.212 5.212 6 C 0.269 3.731 7 C -0.398 4.398 8 H 0.130 0.870 9 C -0.161 4.161 10 N -0.332 5.332 11 Si 0.743 3.257 12 H -0.173 1.173 13 H -0.192 1.192 14 H -0.176 1.176 15 N -0.264 5.264 16 C 0.212 3.788 17 C -0.218 4.218 18 C -0.026 4.026 19 C -0.280 4.280 20 C -0.081 4.081 21 N -0.065 5.065 22 O -0.116 6.116 23 C 0.075 3.925 24 C -0.245 4.245 25 H 0.118 0.882 26 H 0.243 0.757 27 H 0.162 0.838 28 H 0.146 0.854 29 H 0.217 0.783 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.132 6.627 -5.718 9.680 hybrid contribution -0.510 -0.124 -1.017 1.145 sum 3.622 6.503 -6.735 10.038 Atomic orbital electron populations 1.81080 1.12195 1.18444 1.09504 1.24675 0.91290 0.90521 0.91960 1.12907 0.83053 1.45372 0.91474 1.25179 0.92529 0.90577 0.91686 1.81102 1.09753 1.18877 1.11502 1.16735 0.80061 0.86401 0.89854 1.20321 0.98305 1.31820 0.89353 0.86983 1.26472 0.95024 0.92040 1.02604 1.69461 1.09447 1.22680 1.31581 0.86007 0.80473 0.81396 0.77789 1.17298 1.19237 1.17576 1.41512 1.04924 1.09059 1.70882 1.17223 0.89837 0.85575 0.86142 1.20648 1.01299 0.90971 1.08920 1.20074 0.91365 0.97538 0.93634 1.20488 0.95841 0.91362 1.20271 1.25838 0.90148 1.00009 0.92120 1.79762 1.19599 0.86477 1.20646 1.89071 1.23000 1.20469 1.79065 1.19727 0.84195 0.94688 0.93855 1.18965 0.92609 0.95029 1.17852 0.88207 0.75681 0.83829 0.85438 0.78325 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.89 18.54 41.84 0.78 -11.12 16 2 C 0.32 6.91 13.88 -22.47 -0.31 6.60 16 3 C -0.31 -6.26 5.88 -104.94 -0.62 -6.87 16 4 C 0.31 6.55 14.82 -22.47 -0.33 6.22 16 5 N -0.53 -11.92 18.54 41.85 0.78 -11.14 16 6 C 0.37 6.95 4.90 -83.55 -0.41 6.54 16 7 C -0.37 -6.77 7.11 -38.32 -0.27 -7.04 16 8 H 0.11 2.08 6.96 -52.49 -0.37 1.72 16 9 C 0.07 1.21 4.82 -17.20 -0.08 1.12 16 10 N -0.71 -12.34 10.82 55.60 0.60 -11.74 16 11 Si 0.92 13.60 29.58 -169.99 -5.03 8.57 16 12 H -0.25 -3.65 7.11 56.52 0.40 -3.25 16 13 H -0.27 -3.94 7.11 56.52 0.40 -3.54 16 14 H -0.25 -3.85 7.11 56.52 0.40 -3.45 16 15 N -0.65 -11.20 3.29 -8.17 -0.03 -11.23 16 16 C 0.32 5.39 4.99 -83.77 -0.42 4.97 16 17 C -0.20 -3.12 8.54 -39.76 -0.34 -3.46 16 18 C -0.01 -0.07 10.04 -39.65 -0.40 -0.47 16 19 C -0.27 -4.08 6.35 -105.12 -0.67 -4.75 16 20 C 0.12 1.52 12.32 -15.10 -0.19 1.33 16 21 N -0.32 -5.06 12.81 31.93 0.41 -4.65 16 22 O -0.11 -1.91 12.07 7.58 0.09 -1.82 16 23 C 0.13 2.20 7.47 -38.51 -0.29 1.91 16 24 C -0.22 -3.63 9.91 -39.26 -0.39 -4.02 16 25 H 0.31 4.95 8.29 -40.82 -0.34 4.61 16 26 H 0.41 6.82 8.82 -40.82 -0.36 6.46 16 27 H 0.14 2.30 6.28 -52.49 -0.33 1.98 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.20 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -24.31 292.52 -4.16 -28.47 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -1.46 Total: 8.17 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -4.71 Total: 2.08 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 2.54 Total: -49.88 kcal Atomic # 8 Polarization: -1.91 SS G_CDS: 0.09 Total: -1.82 kcal Atomic # 14 Polarization: 13.60 SS G_CDS: -5.03 Total: 8.57 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -24.31 -4.16 -28.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.396 kcal (2) G-P(sol) polarization free energy of solvation -24.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds