Wall clock time and date at job start Tue Mar 31 2020 01:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43200 * 120.00149 * 295.85975 * 3 2 1 5 5 N 3.51037 * 140.68669 * 295.86905 * 2 1 3 6 6 C 1.41175 * 120.00006 * 115.86793 * 3 2 1 7 7 C 1.39015 * 120.00306 * 174.51595 * 6 3 2 8 8 H 1.08005 * 119.99922 * 337.77904 * 7 6 3 9 9 C 1.40824 * 120.00280 * 157.50898 * 7 6 3 10 10 N 1.30338 * 120.00086 * 351.18656 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 171.19155 * 9 7 6 12 12 H 1.48511 * 109.47234 * 89.99722 * 11 9 7 13 13 H 1.48501 * 109.47462 * 209.99419 * 11 9 7 14 14 H 1.48495 * 109.47288 * 330.00181 * 11 9 7 15 15 N 1.38264 * 119.99727 * 354.51431 * 6 3 2 16 16 C 1.39642 * 119.99821 * 119.94164 * 15 6 3 17 17 C 1.38449 * 120.20538 * 353.71569 * 16 15 6 18 18 C 1.38564 * 120.32945 * 179.97438 * 17 16 15 19 19 C 1.37979 * 120.54659 * 0.02562 * 18 17 16 20 20 C 1.38747 * 120.02853 * 359.97144 * 19 18 17 21 21 O 1.35126 * 133.89376 * 179.97438 * 20 19 18 22 22 C 1.34288 * 108.14273 * 179.32339 * 21 20 19 23 23 N 1.29891 * 110.25259 * 0.63431 * 22 21 20 24 24 C 1.36018 * 108.80142 * 359.45147 * 23 22 21 25 25 H 0.97001 * 120.00836 * 185.02206 * 10 9 7 26 26 H 0.96995 * 119.99950 * 299.93741 * 15 6 3 27 27 H 1.07992 * 119.83684 * 0.02562 * 17 16 15 28 28 H 1.07996 * 119.72072 * 180.02562 * 18 17 16 29 29 H 1.07999 * 119.98457 * 179.97438 * 19 18 17 30 30 H 1.08001 * 124.87471 * 180.08466 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.5399 1.1159 5 7 3.8519 -0.9704 2.0012 6 6 3.2736 0.5344 -1.1001 7 6 4.6589 0.6398 -1.0525 8 1 5.1661 0.6648 -0.0992 9 6 5.4015 0.7082 -2.2471 10 7 4.8143 0.5010 -3.3921 11 14 7.2279 1.0956 -2.1907 12 1 7.9989 -0.1685 -2.0757 13 1 7.6223 1.8043 -3.4347 14 1 7.5149 1.9588 -1.0170 15 7 2.5868 0.9523 -2.2250 16 6 2.6743 2.2819 -2.6426 17 6 3.3396 3.2140 -1.8645 18 6 3.4284 4.5340 -2.2766 19 6 2.8558 4.9375 -3.4654 20 6 2.1847 4.0190 -4.2598 21 8 1.5367 4.1004 -5.4428 22 6 1.0812 2.8764 -5.7552 23 7 1.3967 2.0280 -4.8236 24 6 2.0946 2.6798 -3.8550 25 1 5.3379 0.4759 -4.2083 26 1 2.0443 0.3219 -2.7240 27 1 3.7923 2.9107 -0.9322 28 1 3.9501 5.2528 -1.6622 29 1 2.9302 5.9687 -3.7777 30 1 0.5242 2.6341 -6.6482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080742.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:48 Heat of formation + Delta-G solvation = 98.167481 kcal Electronic energy + Delta-G solvation = -20544.181133 eV Core-core repulsion = 17306.017745 eV Total energy + Delta-G solvation = -3238.163388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.74152 -38.73678 -36.53971 -35.18593 -34.73819 -34.30045 -33.46973 -30.92237 -29.42631 -27.84659 -27.18734 -23.45652 -22.73410 -21.81184 -20.76701 -18.99132 -17.71738 -17.50072 -17.11449 -16.34822 -16.15779 -15.68864 -15.39401 -14.66228 -13.96499 -13.48714 -13.15032 -12.84521 -12.65296 -12.44345 -12.27696 -11.91855 -11.71520 -11.70289 -11.63035 -11.54001 -11.30618 -11.05422 -11.03668 -10.91876 -10.69970 -10.15330 -10.11551 -9.75559 -8.31679 -8.16529 -7.71661 -6.62625 -5.50604 1.27541 1.74889 2.23559 2.68188 2.75144 2.83114 2.90669 3.01536 3.36601 3.79407 3.91725 4.04068 4.16446 4.26972 4.32447 4.39202 5.12030 5.20755 5.31763 5.49824 5.58777 5.64117 5.82818 6.15732 6.19072 6.34811 6.43478 6.59952 6.65622 6.85777 6.99252 7.09706 7.26036 7.60669 7.72786 7.96824 8.25839 8.44669 8.94243 9.10023 9.18212 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.008080 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.388767 B = 3464.610585 C = 4617.643250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.308 3.692 3 C -0.308 4.308 4 C 0.325 3.675 5 N -0.531 5.531 6 C 0.375 3.625 7 C -0.377 4.377 8 H 0.113 0.887 9 C 0.070 3.930 10 N -0.712 5.712 11 Si 0.923 3.077 12 H -0.258 1.258 13 H -0.267 1.267 14 H -0.246 1.246 15 N -0.641 5.641 16 C 0.327 3.673 17 C -0.212 4.212 18 C -0.036 4.036 19 C -0.186 4.186 20 C 0.055 3.945 21 O -0.227 6.227 22 C 0.183 3.817 23 N -0.456 5.456 24 C -0.049 4.049 25 H 0.302 0.698 26 H 0.410 0.590 27 H 0.146 0.854 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 8.261 -8.755 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C 0.001 3.999 3 C -0.326 4.326 4 C 0.017 3.983 5 N -0.214 5.214 6 C 0.271 3.729 7 C -0.404 4.404 8 H 0.131 0.869 9 C -0.162 4.162 10 N -0.330 5.330 11 Si 0.745 3.255 12 H -0.183 1.183 13 H -0.191 1.191 14 H -0.169 1.169 15 N -0.257 5.257 16 C 0.218 3.782 17 C -0.237 4.237 18 C -0.055 4.055 19 C -0.207 4.207 20 C 0.004 3.996 21 O -0.119 6.119 22 C -0.049 4.049 23 N -0.184 5.184 24 C -0.164 4.164 25 H 0.114 0.886 26 H 0.247 0.753 27 H 0.164 0.836 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.136 6.908 -7.510 10.425 hybrid contribution 0.848 0.558 -1.045 1.457 sum 2.984 7.466 -8.555 11.740 Atomic orbital electron populations 1.81068 1.12409 1.17293 1.10478 1.25193 0.91845 0.90737 0.92175 1.12952 0.82210 1.38346 0.99103 1.24672 0.92002 0.90478 0.91103 1.81075 1.09666 1.17768 1.12858 1.16784 0.89349 0.85614 0.81185 1.20327 0.91185 1.33607 0.95315 0.86909 1.26498 1.03706 0.91785 0.94196 1.69503 1.40318 1.23092 1.00124 0.85952 0.78630 0.80615 0.80349 1.18253 1.19100 1.16902 1.41614 1.49291 1.07180 1.27616 1.16745 0.89488 0.84521 0.87462 1.20785 1.07367 0.92360 1.03150 1.20685 0.95596 0.95396 0.93818 1.19403 1.06974 0.98019 0.96302 1.20051 0.97622 0.96131 0.85755 1.84470 1.58857 1.34699 1.33865 1.27808 0.99676 0.76975 1.00468 1.70343 1.13313 1.33011 1.01726 1.19125 1.08761 0.91206 0.97300 0.88568 0.75294 0.83587 0.84947 0.86032 0.73907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.70 18.54 41.84 0.78 -11.92 16 2 C 0.31 7.03 14.82 -22.47 -0.33 6.70 16 3 C -0.31 -6.66 5.88 -104.93 -0.62 -7.28 16 4 C 0.33 7.32 13.98 -22.46 -0.31 7.00 16 5 N -0.53 -12.42 18.54 41.85 0.78 -11.64 16 6 C 0.37 7.65 4.96 -83.56 -0.41 7.23 16 7 C -0.38 -7.40 6.77 -38.32 -0.26 -7.66 16 8 H 0.11 2.21 7.16 -52.48 -0.38 1.83 16 9 C 0.07 1.29 4.84 -17.21 -0.08 1.21 16 10 N -0.71 -13.65 11.10 55.59 0.62 -13.03 16 11 Si 0.92 14.44 29.58 -169.99 -5.03 9.41 16 12 H -0.26 -4.12 7.11 56.52 0.40 -3.72 16 13 H -0.27 -4.15 7.11 56.52 0.40 -3.75 16 14 H -0.25 -3.81 7.11 56.52 0.40 -3.41 16 15 N -0.64 -12.77 3.31 -8.02 -0.03 -12.79 16 16 C 0.33 6.24 5.28 -83.50 -0.44 5.80 16 17 C -0.21 -3.69 8.61 -39.38 -0.34 -4.03 16 18 C -0.04 -0.53 10.02 -39.56 -0.40 -0.92 16 19 C -0.19 -2.79 10.06 -39.49 -0.40 -3.19 16 20 C 0.06 0.95 7.43 -38.66 -0.29 0.66 16 21 O -0.23 -3.49 10.78 3.43 0.04 -3.45 16 22 C 0.18 2.52 13.13 51.94 0.68 3.20 16 23 N -0.46 -8.07 11.33 -12.43 -0.14 -8.21 16 24 C -0.05 -0.93 7.10 -84.55 -0.60 -1.53 16 25 H 0.30 5.38 8.29 -40.82 -0.34 5.04 16 26 H 0.41 8.42 8.84 -40.82 -0.36 8.06 16 27 H 0.15 2.54 6.17 -52.49 -0.32 2.22 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.25 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -26.29 292.02 -3.85 -30.15 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -1.46 Total: 9.90 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -3.80 Total: 7.19 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 2.00 Total: -57.60 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 14.44 SS G_CDS: -5.03 Total: 9.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.29 -3.85 -30.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080742.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.315 kcal (2) G-P(sol) polarization free energy of solvation -26.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds