Wall clock time and date at job start Tue Mar 31 2020 01:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43200 * 120.00149 * 295.85975 * 3 2 1 5 5 N 3.51037 * 140.68669 * 295.86905 * 2 1 3 6 6 C 1.41175 * 120.00006 * 115.86793 * 3 2 1 7 7 C 1.39015 * 120.00306 * 174.51595 * 6 3 2 8 8 H 1.08005 * 119.99922 * 337.77904 * 7 6 3 9 9 C 1.40824 * 120.00280 * 157.50898 * 7 6 3 10 10 N 1.30338 * 120.00086 * 351.18656 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 171.19155 * 9 7 6 12 12 H 1.48511 * 109.47234 * 89.99722 * 11 9 7 13 13 H 1.48501 * 109.47462 * 209.99419 * 11 9 7 14 14 H 1.48495 * 109.47288 * 330.00181 * 11 9 7 15 15 N 1.38264 * 119.99727 * 354.51431 * 6 3 2 16 16 C 1.39642 * 119.99821 * 119.94164 * 15 6 3 17 17 C 1.38449 * 120.20538 * 353.71569 * 16 15 6 18 18 C 1.38564 * 120.32945 * 179.97438 * 17 16 15 19 19 C 1.37979 * 120.54659 * 0.02562 * 18 17 16 20 20 C 1.38747 * 120.02853 * 359.97144 * 19 18 17 21 21 O 1.35126 * 133.89376 * 179.97438 * 20 19 18 22 22 C 1.34288 * 108.14273 * 179.32339 * 21 20 19 23 23 N 1.29891 * 110.25259 * 0.63431 * 22 21 20 24 24 C 1.36018 * 108.80142 * 359.45147 * 23 22 21 25 25 H 0.97001 * 120.00836 * 185.02206 * 10 9 7 26 26 H 0.96995 * 119.99950 * 299.93741 * 15 6 3 27 27 H 1.07992 * 119.83684 * 0.02562 * 17 16 15 28 28 H 1.07996 * 119.72072 * 180.02562 * 18 17 16 29 29 H 1.07999 * 119.98457 * 179.97438 * 19 18 17 30 30 H 1.08001 * 124.87471 * 180.08466 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.5399 1.1159 5 7 3.8519 -0.9704 2.0012 6 6 3.2736 0.5344 -1.1001 7 6 4.6589 0.6398 -1.0525 8 1 5.1661 0.6648 -0.0992 9 6 5.4015 0.7082 -2.2471 10 7 4.8143 0.5010 -3.3921 11 14 7.2279 1.0956 -2.1907 12 1 7.9989 -0.1685 -2.0757 13 1 7.6223 1.8043 -3.4347 14 1 7.5149 1.9588 -1.0170 15 7 2.5868 0.9523 -2.2250 16 6 2.6743 2.2819 -2.6426 17 6 3.3396 3.2140 -1.8645 18 6 3.4284 4.5340 -2.2766 19 6 2.8558 4.9375 -3.4654 20 6 2.1847 4.0190 -4.2598 21 8 1.5367 4.1004 -5.4428 22 6 1.0812 2.8764 -5.7552 23 7 1.3967 2.0280 -4.8236 24 6 2.0946 2.6798 -3.8550 25 1 5.3379 0.4759 -4.2083 26 1 2.0443 0.3219 -2.7240 27 1 3.7923 2.9107 -0.9322 28 1 3.9501 5.2528 -1.6622 29 1 2.9302 5.9687 -3.7777 30 1 0.5242 2.6341 -6.6482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080742.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:48 Heat of formation + Delta-G solvation = 81.745127 kcal Electronic energy + Delta-G solvation = -20544.893259 eV Core-core repulsion = 17306.017745 eV Total energy + Delta-G solvation = -3238.875515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.94666 -40.13305 -38.00734 -36.82793 -36.53546 -35.55694 -34.92064 -32.43885 -30.66049 -29.20220 -28.80056 -24.70391 -23.97878 -23.22676 -22.14508 -20.56583 -19.07023 -18.93190 -18.49734 -17.78425 -17.41669 -16.91772 -16.78062 -15.92518 -15.32384 -14.67559 -14.63710 -14.41205 -14.37251 -13.88316 -13.76939 -13.50195 -13.41300 -13.18170 -13.11219 -12.92360 -12.76235 -12.63467 -12.47281 -12.28373 -12.03420 -11.52061 -11.37636 -11.15172 -9.74550 -9.53791 -9.14855 -8.02960 -7.15491 0.06012 0.39753 0.81782 1.38387 1.53415 1.56315 1.73025 1.88229 2.03533 2.08432 2.21742 2.31995 2.59611 2.76556 2.96178 3.28090 3.39173 3.82208 3.96046 4.18933 4.35370 4.48661 4.57685 4.65680 4.69282 4.97019 5.21337 5.37509 5.39018 5.48821 5.62760 5.68058 5.91835 6.05798 6.19719 6.64571 6.89516 6.90717 7.18718 7.33595 7.73170 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.008080 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.388767 B = 3464.610585 C = 4617.643250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C 0.315 3.685 3 C -0.324 4.324 4 C 0.331 3.669 5 N -0.553 5.553 6 C 0.371 3.629 7 C -0.368 4.368 8 H 0.113 0.887 9 C 0.046 3.954 10 N -0.722 5.722 11 Si 0.978 3.022 12 H -0.261 1.261 13 H -0.261 1.261 14 H -0.241 1.241 15 N -0.648 5.648 16 C 0.296 3.704 17 C -0.221 4.221 18 C -0.034 4.034 19 C -0.174 4.174 20 C 0.035 3.965 21 O -0.226 6.226 22 C 0.210 3.790 23 N -0.504 5.504 24 C -0.071 4.071 25 H 0.309 0.691 26 H 0.401 0.599 27 H 0.140 0.860 28 H 0.171 0.829 29 H 0.153 0.847 30 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 10.172 -10.307 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.244 5.244 2 C 0.010 3.990 3 C -0.343 4.343 4 C 0.025 3.975 5 N -0.237 5.237 6 C 0.267 3.733 7 C -0.395 4.395 8 H 0.130 0.870 9 C -0.185 4.185 10 N -0.339 5.339 11 Si 0.797 3.203 12 H -0.185 1.185 13 H -0.185 1.185 14 H -0.164 1.164 15 N -0.265 5.265 16 C 0.190 3.810 17 C -0.246 4.246 18 C -0.052 4.052 19 C -0.195 4.195 20 C -0.016 4.016 21 O -0.118 6.118 22 C -0.022 4.022 23 N -0.232 5.232 24 C -0.184 4.184 25 H 0.121 0.879 26 H 0.236 0.764 27 H 0.158 0.842 28 H 0.189 0.811 29 H 0.171 0.829 30 H 0.313 0.687 Dipole moment (debyes) X Y Z Total from point charges 3.389 8.847 -9.065 13.112 hybrid contribution 0.466 0.059 -0.778 0.909 sum 3.855 8.906 -9.843 13.823 Atomic orbital electron populations 1.81042 1.13072 1.18810 1.11469 1.25383 0.92045 0.90135 0.91475 1.13021 0.81655 1.39914 0.99702 1.24777 0.91693 0.90095 0.90955 1.81059 1.10273 1.18951 1.13383 1.16797 0.89663 0.85750 0.81127 1.20529 0.91009 1.31998 0.95963 0.86958 1.27097 1.06629 0.91359 0.93386 1.69537 1.41677 1.22006 1.00696 0.85154 0.74306 0.80280 0.80600 1.18520 1.18517 1.16353 1.41490 1.49827 1.07593 1.27542 1.17017 0.91213 0.84282 0.88505 1.20952 1.07288 0.93491 1.02820 1.21102 0.95176 0.94877 0.94076 1.19875 1.04950 0.99135 0.95563 1.20429 0.98587 0.96010 0.86606 1.84494 1.58736 1.35362 1.33241 1.29044 0.96967 0.75734 1.00425 1.70346 1.15339 1.34502 1.02974 1.19379 1.09191 0.92303 0.97569 0.87870 0.76356 0.84229 0.81139 0.82891 0.68681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.59 18.54 19.00 0.35 -27.23 16 2 C 0.32 14.83 14.82 88.33 1.31 16.14 16 3 C -0.32 -14.37 5.88 -20.06 -0.12 -14.49 16 4 C 0.33 15.14 13.98 88.33 1.23 16.38 16 5 N -0.55 -26.08 18.54 19.01 0.35 -25.73 16 6 C 0.37 15.41 4.96 39.04 0.19 15.61 16 7 C -0.37 -14.37 6.77 23.09 0.16 -14.21 16 8 H 0.11 4.36 7.16 -2.91 -0.02 4.34 16 9 C 0.05 1.66 4.84 85.55 0.41 2.08 16 10 N -0.72 -27.20 11.10 21.98 0.24 -26.95 16 11 Si 0.98 27.94 29.58 68.60 2.03 29.97 16 12 H -0.26 -7.58 7.11 99.48 0.71 -6.87 16 13 H -0.26 -7.22 7.11 99.48 0.71 -6.52 16 14 H -0.24 -6.68 7.11 99.48 0.71 -5.97 16 15 N -0.65 -26.40 3.31 -179.28 -0.59 -26.99 16 16 C 0.30 11.34 5.28 38.41 0.20 11.54 16 17 C -0.22 -7.52 8.61 22.40 0.19 -7.33 16 18 C -0.03 -0.90 10.02 22.29 0.22 -0.68 16 19 C -0.17 -4.74 10.06 22.33 0.22 -4.51 16 20 C 0.03 1.12 7.43 22.87 0.17 1.29 16 21 O -0.23 -6.39 10.78 -10.63 -0.11 -6.51 16 22 C 0.21 5.27 13.13 130.53 1.71 6.98 16 23 N -0.50 -17.46 11.33 -308.04 -3.49 -20.96 16 24 C -0.07 -2.64 7.10 39.44 0.28 -2.36 16 25 H 0.31 10.68 8.29 -92.71 -0.77 9.91 16 26 H 0.40 17.17 8.84 -92.71 -0.82 16.35 16 27 H 0.14 4.82 6.17 -2.91 -0.02 4.80 16 28 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.30 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -57.64 292.02 5.40 -52.24 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.42 Total: 25.71 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 6.20 Total: 26.45 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -3.14 Total: -127.86 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.11 Total: -6.51 kcal Atomic # 14 Polarization: 27.94 SS G_CDS: 2.03 Total: 29.97 kcal Total: -57.64 5.40 -52.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080742.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.985 kcal (2) G-P(sol) polarization free energy of solvation -57.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds