Wall clock time and date at job start Tue Mar 31 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43197 * 120.00280 * 349.27381 * 3 2 1 5 5 N 3.51038 * 140.68231 * 349.27645 * 2 1 3 6 6 C 1.41174 * 120.00006 * 169.27861 * 3 2 1 7 7 C 1.39016 * 119.99543 * 354.72228 * 6 3 2 8 8 H 1.07998 * 120.00057 * 18.38418 * 7 6 3 9 9 C 1.40831 * 119.99477 * 198.39019 * 7 6 3 10 10 N 1.30330 * 120.00235 * 9.39992 * 9 7 6 11 11 Si 1.86799 * 119.99593 * 189.40217 * 9 7 6 12 12 H 1.48503 * 109.46866 * 89.99583 * 11 9 7 13 13 H 1.48498 * 109.47117 * 209.99771 * 11 9 7 14 14 H 1.48507 * 109.47288 * 329.99899 * 11 9 7 15 15 N 1.38256 * 120.00299 * 174.72072 * 6 3 2 16 16 C 1.39926 * 120.00044 * 241.21986 * 15 6 3 17 17 C 1.39339 * 119.86958 * 7.77249 * 16 15 6 18 18 C 1.37807 * 120.40463 * 180.02562 * 17 16 15 19 19 C 1.38708 * 119.97335 * 359.91257 * 18 17 16 20 20 O 1.35202 * 133.83871 * 180.02562 * 19 18 17 21 21 C 1.34218 * 108.16089 * 180.02562 * 20 19 18 22 22 N 1.29920 * 110.29108 * 0.24414 * 21 20 19 23 23 C 1.36082 * 108.80827 * 359.60876 * 22 21 20 24 24 C 1.38328 * 119.86951 * 187.75626 * 16 15 6 25 25 H 0.96997 * 119.99969 * 184.99342 * 10 9 7 26 26 H 0.97003 * 120.00253 * 61.21505 * 15 6 3 27 27 H 1.07996 * 119.79385 * 0.02562 * 17 16 15 28 28 H 1.07993 * 120.01181 * 179.97438 * 18 17 16 29 29 H 1.07998 * 124.85422 * 179.97438 * 21 20 19 30 30 H 1.08002 * 120.16845 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2175 0.2308 5 7 3.8518 -2.1854 0.4139 6 6 3.2733 1.2022 -0.2274 7 6 2.5821 2.3616 -0.5597 8 1 1.5232 2.4350 -0.3601 9 6 3.2626 3.4404 -1.1568 10 7 4.4911 3.2902 -1.5652 11 14 2.4043 5.0866 -1.3635 12 1 2.6439 5.9241 -0.1607 13 1 2.9415 5.7778 -2.5630 14 1 0.9452 4.8666 -1.5308 15 7 4.6515 1.2259 -0.1197 16 6 5.2649 2.0502 0.8301 17 6 4.4877 2.7214 1.7719 18 6 5.0803 3.5364 2.7120 19 6 6.4587 3.6908 2.7251 20 8 7.3145 4.3979 3.4968 21 6 8.5611 4.1734 3.0530 22 7 8.5387 3.3646 2.0365 23 6 7.2480 3.0177 1.7803 24 6 6.6406 2.1954 0.8305 25 1 4.9841 4.0511 -1.9097 26 1 5.1932 0.6710 -0.7025 27 1 3.4144 2.6020 1.7652 28 1 4.4718 4.0538 3.4388 29 1 9.4547 4.6069 3.4771 30 1 7.2415 1.6746 0.0997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080870.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:25 Heat of formation + Delta-G solvation = 100.812163 kcal Electronic energy + Delta-G solvation = -20301.062153 eV Core-core repulsion = 17063.013447 eV Total energy + Delta-G solvation = -3238.048706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.78558 -38.88526 -36.50481 -35.17255 -34.74982 -34.29144 -33.44373 -31.10088 -29.48026 -27.92374 -27.19981 -23.44647 -22.74477 -21.57237 -21.14226 -19.17645 -17.60579 -17.48921 -16.89538 -16.56892 -16.28638 -16.13833 -15.22379 -14.01906 -13.89399 -13.75304 -13.28383 -12.84061 -12.68739 -12.55791 -12.41193 -12.30619 -11.79837 -11.70456 -11.59267 -11.55114 -11.24969 -11.21714 -11.05080 -10.93153 -10.68978 -10.19459 -10.10730 -9.76919 -8.28634 -8.14474 -7.76284 -6.73721 -5.51722 1.09350 1.73104 2.21464 2.66824 2.72918 2.79222 2.86081 2.95540 3.34999 3.76893 3.86641 4.02250 4.14881 4.21146 4.26591 4.46549 4.96587 5.12368 5.40046 5.49428 5.55897 5.70357 5.72404 6.05058 6.14576 6.28921 6.48603 6.54632 6.67747 6.74383 6.80920 7.00349 7.26252 7.60161 7.72165 7.90915 8.23144 8.45199 8.92971 9.08449 9.14062 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.006990 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.637109 B = 4004.822612 C = 5134.839741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C 0.324 3.676 3 C -0.313 4.313 4 C 0.310 3.690 5 N -0.533 5.533 6 C 0.380 3.620 7 C -0.377 4.377 8 H 0.111 0.889 9 C 0.071 3.929 10 N -0.711 5.711 11 Si 0.919 3.081 12 H -0.254 1.254 13 H -0.267 1.267 14 H -0.249 1.249 15 N -0.658 5.658 16 C 0.263 3.737 17 C -0.135 4.135 18 C -0.062 4.062 19 C -0.052 4.052 20 O -0.224 6.224 21 C 0.213 3.787 22 N -0.491 5.491 23 C 0.059 3.941 24 C -0.151 4.151 25 H 0.303 0.697 26 H 0.404 0.596 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.247 0.753 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.784 10.072 3.614 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.215 5.215 2 C 0.016 3.984 3 C -0.331 4.331 4 C 0.002 3.998 5 N -0.216 5.216 6 C 0.276 3.724 7 C -0.405 4.405 8 H 0.129 0.871 9 C -0.161 4.161 10 N -0.329 5.329 11 Si 0.740 3.260 12 H -0.179 1.179 13 H -0.192 1.192 14 H -0.172 1.172 15 N -0.278 5.278 16 C 0.157 3.843 17 C -0.157 4.157 18 C -0.081 4.081 19 C -0.102 4.102 20 O -0.115 6.115 21 C -0.018 4.018 22 N -0.222 5.222 23 C -0.052 4.052 24 C -0.175 4.175 25 H 0.115 0.885 26 H 0.241 0.759 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.262 0.738 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.448 8.445 3.378 11.149 hybrid contribution -0.058 1.264 -0.149 1.274 sum 6.389 9.709 3.229 12.063 Atomic orbital electron populations 1.81072 1.12233 1.09170 1.19030 1.24703 0.91320 0.92010 0.90334 1.12966 0.83000 0.88384 1.48747 1.25197 0.92452 0.91818 0.90305 1.81110 1.09835 1.11280 1.19334 1.16730 0.80381 0.90377 0.84952 1.20350 0.98238 0.97292 1.24596 0.87116 1.26444 0.95003 1.02282 0.92337 1.69486 1.09446 1.34529 1.19474 0.86011 0.81369 0.78736 0.79877 1.17855 1.19178 1.17157 1.41393 1.04492 1.44804 1.37135 1.17147 0.90223 0.89179 0.87741 1.20907 1.01124 0.98753 0.94873 1.19547 0.88442 1.00128 1.00001 1.20088 0.92963 1.00837 0.96310 1.84435 1.17089 1.58676 1.51327 1.28010 0.86914 0.95235 0.91686 1.70547 1.21141 1.14954 1.15527 1.19328 0.87916 1.00146 0.97826 1.19329 0.92352 1.04500 1.01358 0.88468 0.75894 0.83236 0.85270 0.73768 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.24 18.54 41.84 0.78 -11.47 16 2 C 0.32 7.12 13.88 -22.47 -0.31 6.80 16 3 C -0.31 -6.50 5.88 -104.93 -0.62 -7.12 16 4 C 0.31 6.77 14.82 -22.45 -0.33 6.44 16 5 N -0.53 -12.28 18.54 41.86 0.78 -11.50 16 6 C 0.38 7.34 4.92 -83.56 -0.41 6.93 16 7 C -0.38 -7.14 7.10 -38.31 -0.27 -7.41 16 8 H 0.11 2.14 6.96 -52.49 -0.37 1.77 16 9 C 0.07 1.26 4.80 -17.21 -0.08 1.18 16 10 N -0.71 -12.80 10.81 55.59 0.60 -12.20 16 11 Si 0.92 14.11 29.58 -169.99 -5.03 9.08 16 12 H -0.25 -3.90 7.11 56.52 0.40 -3.50 16 13 H -0.27 -4.10 7.11 56.52 0.40 -3.70 16 14 H -0.25 -3.94 7.11 56.52 0.40 -3.54 16 15 N -0.66 -11.91 3.31 -8.18 -0.03 -11.93 16 16 C 0.26 4.62 4.97 -83.72 -0.42 4.20 16 17 C -0.14 -2.28 8.58 -39.33 -0.34 -2.61 16 18 C -0.06 -0.96 10.05 -39.57 -0.40 -1.36 16 19 C -0.05 -0.86 7.43 -38.63 -0.29 -1.15 16 20 O -0.22 -3.26 10.78 3.40 0.04 -3.22 16 21 C 0.21 2.61 13.13 51.95 0.68 3.29 16 22 N -0.49 -7.88 11.34 -12.55 -0.14 -8.02 16 23 C 0.06 1.04 7.23 -84.72 -0.61 0.42 16 24 C -0.15 -2.63 9.94 -39.06 -0.39 -3.02 16 25 H 0.30 5.09 8.29 -40.82 -0.34 4.75 16 26 H 0.40 7.14 8.83 -40.82 -0.36 6.78 16 27 H 0.15 2.49 6.29 -52.49 -0.33 2.16 16 28 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.25 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 291.49 15.07 4.39 4.39 Total: -1.00 -25.67 291.49 -3.86 -29.53 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.46 Total: 8.74 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -3.79 Total: 6.60 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 1.98 Total: -55.12 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 14.11 SS G_CDS: -5.03 Total: 9.08 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.67 -3.86 -29.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080870.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.344 kcal (2) G-P(sol) polarization free energy of solvation -25.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds