Wall clock time and date at job start Tue Mar 31 2020 01:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43197 * 120.00280 * 349.27381 * 3 2 1 5 5 N 3.51038 * 140.68231 * 349.27645 * 2 1 3 6 6 C 1.41174 * 120.00006 * 169.27861 * 3 2 1 7 7 C 1.39016 * 119.99543 * 354.72228 * 6 3 2 8 8 H 1.07998 * 120.00057 * 18.38418 * 7 6 3 9 9 C 1.40831 * 119.99477 * 198.39019 * 7 6 3 10 10 N 1.30330 * 120.00235 * 9.39992 * 9 7 6 11 11 Si 1.86799 * 119.99593 * 189.40217 * 9 7 6 12 12 H 1.48503 * 109.46866 * 89.99583 * 11 9 7 13 13 H 1.48498 * 109.47117 * 209.99771 * 11 9 7 14 14 H 1.48507 * 109.47288 * 329.99899 * 11 9 7 15 15 N 1.38256 * 120.00299 * 174.72072 * 6 3 2 16 16 C 1.39926 * 120.00044 * 241.21986 * 15 6 3 17 17 C 1.39339 * 119.86958 * 7.77249 * 16 15 6 18 18 C 1.37807 * 120.40463 * 180.02562 * 17 16 15 19 19 C 1.38708 * 119.97335 * 359.91257 * 18 17 16 20 20 O 1.35202 * 133.83871 * 180.02562 * 19 18 17 21 21 C 1.34218 * 108.16089 * 180.02562 * 20 19 18 22 22 N 1.29920 * 110.29108 * 0.24414 * 21 20 19 23 23 C 1.36082 * 108.80827 * 359.60876 * 22 21 20 24 24 C 1.38328 * 119.86951 * 187.75626 * 16 15 6 25 25 H 0.96997 * 119.99969 * 184.99342 * 10 9 7 26 26 H 0.97003 * 120.00253 * 61.21505 * 15 6 3 27 27 H 1.07996 * 119.79385 * 0.02562 * 17 16 15 28 28 H 1.07993 * 120.01181 * 179.97438 * 18 17 16 29 29 H 1.07998 * 124.85422 * 179.97438 * 21 20 19 30 30 H 1.08002 * 120.16845 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2175 0.2308 5 7 3.8518 -2.1854 0.4139 6 6 3.2733 1.2022 -0.2274 7 6 2.5821 2.3616 -0.5597 8 1 1.5232 2.4350 -0.3601 9 6 3.2626 3.4404 -1.1568 10 7 4.4911 3.2902 -1.5652 11 14 2.4043 5.0866 -1.3635 12 1 2.6439 5.9241 -0.1607 13 1 2.9415 5.7778 -2.5630 14 1 0.9452 4.8666 -1.5308 15 7 4.6515 1.2259 -0.1197 16 6 5.2649 2.0502 0.8301 17 6 4.4877 2.7214 1.7719 18 6 5.0803 3.5364 2.7120 19 6 6.4587 3.6908 2.7251 20 8 7.3145 4.3979 3.4968 21 6 8.5611 4.1734 3.0530 22 7 8.5387 3.3646 2.0365 23 6 7.2480 3.0177 1.7803 24 6 6.6406 2.1954 0.8305 25 1 4.9841 4.0511 -1.9097 26 1 5.1932 0.6710 -0.7025 27 1 3.4144 2.6020 1.7652 28 1 4.4718 4.0538 3.4388 29 1 9.4547 4.6069 3.4771 30 1 7.2415 1.6746 0.0997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080870.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:24 Heat of formation + Delta-G solvation = 85.244467 kcal Electronic energy + Delta-G solvation = -20301.737218 eV Core-core repulsion = 17063.013447 eV Total energy + Delta-G solvation = -3238.723772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.94155 -40.26026 -37.97733 -36.75756 -36.49825 -35.48878 -34.86139 -32.55701 -30.75633 -29.24686 -28.75983 -24.60450 -24.10982 -22.82367 -22.50273 -20.71448 -19.04187 -18.83955 -18.21307 -17.88098 -17.53521 -17.41447 -16.55885 -15.33171 -15.11796 -14.99149 -14.57550 -14.51678 -14.35192 -13.88310 -13.85981 -13.74470 -13.36406 -13.35624 -13.11811 -13.03657 -12.65953 -12.63190 -12.44926 -12.38963 -12.03292 -11.52654 -11.31866 -11.12576 -9.79672 -9.38321 -9.16047 -8.13706 -7.11809 -0.08110 0.36220 0.84667 1.39640 1.52750 1.57122 1.68980 1.86193 2.06292 2.10081 2.25811 2.35832 2.62171 2.77583 2.92012 3.35827 3.44532 3.75016 3.87733 4.22022 4.35173 4.40583 4.49521 4.64778 4.70661 4.90472 5.22074 5.30408 5.39936 5.42119 5.53036 5.55133 5.81729 6.08486 6.23196 6.74522 6.81772 6.98707 7.23406 7.37606 7.73013 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.006990 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.637109 B = 4004.822612 C = 5134.839741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C 0.330 3.670 3 C -0.326 4.326 4 C 0.317 3.683 5 N -0.561 5.561 6 C 0.377 3.623 7 C -0.369 4.369 8 H 0.107 0.893 9 C 0.050 3.950 10 N -0.715 5.715 11 Si 0.970 3.030 12 H -0.249 1.249 13 H -0.263 1.263 14 H -0.255 1.255 15 N -0.658 5.658 16 C 0.255 3.745 17 C -0.152 4.152 18 C -0.051 4.051 19 C -0.066 4.066 20 O -0.224 6.224 21 C 0.244 3.756 22 N -0.532 5.532 23 C 0.044 3.956 24 C -0.164 4.164 25 H 0.311 0.689 26 H 0.403 0.597 27 H 0.148 0.852 28 H 0.157 0.843 29 H 0.306 0.694 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 12.485 4.360 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.241 5.241 2 C 0.024 3.976 3 C -0.345 4.345 4 C 0.012 3.988 5 N -0.245 5.245 6 C 0.273 3.727 7 C -0.396 4.396 8 H 0.125 0.875 9 C -0.182 4.182 10 N -0.332 5.332 11 Si 0.790 3.210 12 H -0.173 1.173 13 H -0.187 1.187 14 H -0.179 1.179 15 N -0.280 5.280 16 C 0.151 3.849 17 C -0.173 4.173 18 C -0.071 4.071 19 C -0.117 4.117 20 O -0.116 6.116 21 C 0.014 3.986 22 N -0.262 5.262 23 C -0.067 4.067 24 C -0.189 4.189 25 H 0.124 0.876 26 H 0.240 0.760 27 H 0.165 0.835 28 H 0.175 0.825 29 H 0.321 0.679 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.453 10.849 4.128 13.794 hybrid contribution -0.183 0.678 -0.348 0.784 sum 7.270 11.527 3.779 14.142 Atomic orbital electron populations 1.81059 1.12762 1.09817 1.20454 1.24847 0.91465 0.91462 0.89852 1.13017 0.82539 0.88611 1.50380 1.25342 0.92016 0.91700 0.89770 1.81097 1.10586 1.11931 1.20870 1.16688 0.80944 0.89988 0.85084 1.20501 0.98108 0.97559 1.23386 0.87511 1.26933 0.95315 1.03992 0.91940 1.69488 1.09881 1.35542 1.18318 0.85256 0.79978 0.75800 0.80012 1.17301 1.18724 1.17891 1.41333 1.03947 1.45206 1.37467 1.17249 0.90402 0.89400 0.87859 1.20941 1.01025 0.99730 0.95583 1.19805 0.88586 0.99080 0.99610 1.20246 0.93482 1.01323 0.96620 1.84467 1.17688 1.58373 1.51055 1.29379 0.87466 0.92315 0.89439 1.70566 1.20537 1.17282 1.17834 1.19559 0.89000 1.00156 0.97974 1.19358 0.92391 1.05198 1.01924 0.87645 0.76024 0.83458 0.82541 0.67948 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -25.75 18.54 19.00 0.35 -25.40 16 2 C 0.33 14.61 13.88 88.33 1.23 15.84 16 3 C -0.33 -13.74 5.88 -20.07 -0.12 -13.86 16 4 C 0.32 14.12 14.82 88.32 1.31 15.43 16 5 N -0.56 -26.27 18.54 19.01 0.35 -25.91 16 6 C 0.38 14.63 4.92 39.04 0.19 14.82 16 7 C -0.37 -13.73 7.10 23.09 0.16 -13.57 16 8 H 0.11 4.07 6.96 -2.91 -0.02 4.05 16 9 C 0.05 1.70 4.80 85.55 0.41 2.11 16 10 N -0.71 -24.90 10.81 21.98 0.24 -24.66 16 11 Si 0.97 27.25 29.58 68.60 2.03 29.28 16 12 H -0.25 -6.81 7.11 99.48 0.71 -6.11 16 13 H -0.26 -7.22 7.11 99.48 0.71 -6.51 16 14 H -0.26 -7.47 7.11 99.48 0.71 -6.77 16 15 N -0.66 -24.04 3.31 -179.78 -0.59 -24.63 16 16 C 0.26 8.97 4.97 38.14 0.19 9.16 16 17 C -0.15 -4.99 8.58 22.43 0.19 -4.79 16 18 C -0.05 -1.51 10.05 22.28 0.22 -1.29 16 19 C -0.07 -2.07 7.43 22.89 0.17 -1.90 16 20 O -0.22 -5.82 10.78 -10.76 -0.12 -5.93 16 21 C 0.24 5.09 13.13 130.53 1.71 6.81 16 22 N -0.53 -16.02 11.34 -308.44 -3.50 -19.52 16 23 C 0.04 1.49 7.23 39.30 0.28 1.78 16 24 C -0.16 -5.74 9.94 22.61 0.22 -5.52 16 25 H 0.31 9.97 8.29 -92.71 -0.77 9.20 16 26 H 0.40 14.56 8.83 -92.71 -0.82 13.74 16 27 H 0.15 4.84 6.29 -2.91 -0.02 4.82 16 28 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.31 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -54.95 291.49 5.37 -49.58 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.42 Total: 22.19 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 6.18 Total: 25.01 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -3.15 Total: -120.13 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.12 Total: -5.93 kcal Atomic # 14 Polarization: 27.25 SS G_CDS: 2.03 Total: 29.28 kcal Total: -54.95 5.37 -49.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080870.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.825 kcal (2) G-P(sol) polarization free energy of solvation -54.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds