Wall clock time and date at job start Tue Mar 31 2020 01:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99805 * 299.96644 * 3 2 1 5 5 N 3.51042 * 140.68592 * 299.96968 * 2 1 3 6 6 C 1.41175 * 120.00015 * 119.96693 * 3 2 1 7 7 C 1.39018 * 119.99825 * 174.50973 * 6 3 2 8 8 H 1.08001 * 120.00024 * 333.19008 * 7 6 3 9 9 C 1.40824 * 119.99821 * 152.91934 * 7 6 3 10 10 N 1.30341 * 119.99724 * 165.17758 * 9 7 6 11 11 Si 1.86799 * 120.00018 * 345.17461 * 9 7 6 12 12 H 1.48498 * 109.46949 * 90.80212 * 11 9 7 13 13 H 1.48506 * 109.46789 * 210.79990 * 11 9 7 14 14 H 1.48499 * 109.47194 * 330.79795 * 11 9 7 15 15 N 1.38249 * 119.99715 * 354.50575 * 6 3 2 16 16 C 1.39865 * 119.99577 * 121.01856 * 15 6 3 17 17 C 1.38465 * 120.17182 * 353.89300 * 16 15 6 18 18 C 1.38676 * 120.51216 * 179.76783 * 17 16 15 19 19 C 1.36655 * 120.58211 * 0.51535 * 18 17 16 20 20 C 1.39796 * 119.94000 * 359.74057 * 19 18 17 21 21 C 1.46575 * 133.68256 * 180.02562 * 20 19 18 22 22 N 1.29754 * 107.42523 * 179.97438 * 21 20 19 23 23 O 1.41357 * 109.70755 * 0.02562 * 22 21 20 24 24 C 1.34868 * 109.30623 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99623 * 179.97438 * 10 9 7 26 26 H 0.96994 * 120.00073 * 301.00963 * 15 6 3 27 27 H 1.07995 * 119.74505 * 0.02562 * 17 16 15 28 28 H 1.07995 * 119.70692 * 180.27539 * 18 17 16 29 29 H 1.07998 * 120.03175 * 179.76982 * 19 18 17 30 30 H 1.07995 * 126.28462 * 0.02945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2843 -0.6185 1.0744 5 7 3.8520 -1.1110 1.9267 6 6 3.2737 0.6116 -1.0592 7 6 4.6590 0.7134 -1.0040 8 1 5.1605 0.7449 -0.0480 9 6 5.4089 0.7697 -2.1947 10 7 6.6549 1.1508 -2.1627 11 14 4.6178 0.2981 -3.8198 12 1 4.0237 1.5046 -4.4496 13 1 5.6472 -0.2759 -4.7232 14 1 3.5537 -0.7092 -3.5785 15 7 2.5869 1.1087 -2.1512 16 6 2.6923 2.4624 -2.4866 17 6 3.3795 3.3332 -1.6579 18 6 3.4925 4.6759 -1.9859 19 6 2.9190 5.1636 -3.1264 20 6 2.2157 4.3046 -3.9760 21 6 1.5005 4.4942 -5.2414 22 7 1.0271 3.3396 -5.5969 23 8 1.3807 2.3635 -4.6375 24 6 2.1002 2.9437 -3.6554 25 1 7.1715 1.1892 -2.9828 26 1 2.0321 0.5186 -2.6849 27 1 3.8346 2.9631 -0.7511 28 1 4.0352 5.3427 -1.3324 29 1 3.0093 6.2115 -3.3714 30 1 1.3891 5.4239 -5.7794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:29 Heat of formation + Delta-G solvation = 114.026968 kcal Electronic energy + Delta-G solvation = -20629.085399 eV Core-core repulsion = 17391.609730 eV Total energy + Delta-G solvation = -3237.475669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70753 -40.16972 -38.07979 -36.94817 -36.59665 -35.64918 -34.44702 -32.55226 -30.97371 -29.54825 -29.01610 -24.54558 -23.71612 -23.26871 -22.32959 -20.70924 -19.24016 -19.12244 -18.32589 -17.92866 -17.26768 -16.91644 -16.34173 -15.86360 -15.04730 -14.80533 -14.69325 -14.56583 -14.45105 -14.38210 -13.95934 -13.58880 -13.46222 -13.31336 -13.12125 -12.95223 -12.83967 -12.73440 -12.46736 -12.40795 -12.33209 -12.09289 -11.64364 -11.05428 -9.94343 -9.72275 -9.41455 -8.39063 -7.21111 -0.27747 0.28151 0.51898 1.22592 1.23817 1.31860 1.38737 1.47948 1.91755 1.98058 2.12865 2.18698 2.47782 2.59451 2.78643 3.31038 3.35927 3.42171 3.69482 3.87572 4.16362 4.35006 4.47295 4.48838 4.53458 4.72618 4.99390 5.11971 5.29678 5.38203 5.53910 5.58113 5.74016 5.85653 6.07151 6.15534 6.47862 6.60600 7.10637 7.28239 7.56671 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.007869 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.796339 B = 3557.515607 C = 4123.267095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C 0.316 3.684 3 C -0.304 4.304 4 C 0.329 3.671 5 N -0.549 5.549 6 C 0.355 3.645 7 C -0.356 4.356 8 H 0.106 0.894 9 C 0.073 3.927 10 N -0.734 5.734 11 Si 0.951 3.049 12 H -0.252 1.252 13 H -0.280 1.280 14 H -0.258 1.258 15 N -0.695 5.695 16 C 0.184 3.816 17 C -0.123 4.123 18 C -0.106 4.106 19 C -0.073 4.073 20 C -0.180 4.180 21 C 0.134 3.866 22 N -0.324 5.324 23 O -0.137 6.137 24 C 0.003 3.997 25 H 0.317 0.683 26 H 0.404 0.596 27 H 0.144 0.856 28 H 0.165 0.835 29 H 0.177 0.823 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 13.413 -10.335 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 C 0.010 3.990 3 C -0.322 4.322 4 C 0.022 3.978 5 N -0.232 5.232 6 C 0.251 3.749 7 C -0.383 4.383 8 H 0.124 0.876 9 C -0.159 4.159 10 N -0.352 5.352 11 Si 0.775 3.225 12 H -0.177 1.177 13 H -0.207 1.207 14 H -0.182 1.182 15 N -0.324 5.324 16 C 0.084 3.916 17 C -0.147 4.147 18 C -0.125 4.125 19 C -0.094 4.094 20 C -0.184 4.184 21 C -0.066 4.066 22 N -0.070 5.070 23 O -0.145 6.145 24 C -0.053 4.053 25 H 0.130 0.870 26 H 0.242 0.758 27 H 0.161 0.839 28 H 0.183 0.817 29 H 0.195 0.805 30 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -0.127 11.916 -9.830 15.448 hybrid contribution 0.249 -0.446 -0.417 0.659 sum 0.121 11.471 -10.246 15.381 Atomic orbital electron populations 1.81077 1.12889 1.17496 1.11897 1.25252 0.91854 0.90383 0.91525 1.12877 0.81712 1.34501 1.03155 1.24802 0.91704 0.90317 0.91002 1.81075 1.10065 1.18091 1.13980 1.16613 0.89207 0.87201 0.81836 1.19999 0.90061 1.31743 0.96533 0.87588 1.26845 0.94874 0.90843 1.03344 1.69365 1.08795 1.22390 1.34649 0.85586 0.79006 0.81140 0.76793 1.17695 1.20712 1.18230 1.42169 1.51599 1.07173 1.31483 1.16808 0.99356 0.84185 0.91211 1.21224 0.99732 0.93854 0.99876 1.20992 0.99733 0.93966 0.97769 1.20714 0.95401 1.00783 0.92502 1.20999 1.07051 0.92114 0.98245 1.26895 0.89114 0.98605 0.91982 1.79737 1.19982 0.99247 1.08066 1.89069 1.63359 1.32406 1.29667 1.19918 0.99175 0.94366 0.91792 0.87031 0.75844 0.83861 0.81715 0.80543 0.71986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -25.70 18.54 19.01 0.35 -25.35 16 2 C 0.32 14.08 14.82 88.33 1.31 15.39 16 3 C -0.30 -12.95 5.88 -20.06 -0.12 -13.07 16 4 C 0.33 14.93 14.04 88.33 1.24 16.17 16 5 N -0.55 -26.16 18.54 19.01 0.35 -25.81 16 6 C 0.35 14.07 4.48 39.04 0.18 14.25 16 7 C -0.36 -14.40 7.07 23.09 0.16 -14.24 16 8 H 0.11 4.68 7.46 -2.91 -0.02 4.66 16 9 C 0.07 2.82 5.15 85.55 0.44 3.26 16 10 N -0.73 -28.35 13.90 21.98 0.31 -28.05 16 11 Si 0.95 33.87 24.40 68.60 1.67 35.54 16 12 H -0.25 -9.11 5.46 99.48 0.54 -8.56 16 13 H -0.28 -9.72 7.11 99.48 0.71 -9.02 16 14 H -0.26 -9.48 6.67 99.48 0.66 -8.82 16 15 N -0.70 -25.98 2.26 -179.54 -0.41 -26.39 16 16 C 0.18 6.32 4.44 38.24 0.17 6.49 16 17 C -0.12 -3.77 8.70 22.43 0.20 -3.58 16 18 C -0.11 -2.37 9.97 22.00 0.22 -2.16 16 19 C -0.07 -1.39 10.05 22.28 0.22 -1.17 16 20 C -0.18 -4.49 6.35 -20.23 -0.13 -4.61 16 21 C 0.13 2.70 12.32 87.18 1.07 3.78 16 22 N -0.32 -9.55 12.81 -52.85 -0.68 -10.22 16 23 O -0.14 -4.95 12.07 29.38 0.35 -4.60 16 24 C 0.00 0.11 6.13 23.10 0.14 0.25 16 25 H 0.32 10.85 8.29 -92.71 -0.77 10.08 16 26 H 0.40 15.19 7.91 -92.71 -0.73 14.45 16 27 H 0.14 4.71 6.10 -2.91 -0.02 4.69 16 28 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 30 H 0.26 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -57.99 285.09 7.36 -50.63 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.30 Total: 13.50 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 5.11 Total: 20.75 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -0.07 Total: -115.81 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: 0.35 Total: -4.60 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 1.67 Total: 35.54 kcal Total: -57.99 7.36 -50.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.655 kcal (2) G-P(sol) polarization free energy of solvation -57.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds