Wall clock time and date at job start Tue Mar 31 2020 01:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47241 * 14.86944 * 3 2 1 5 5 C 1.36931 * 119.99689 * 274.99894 * 4 3 2 6 6 H 1.08001 * 119.99913 * 187.00328 * 5 4 3 7 7 C 1.38816 * 120.00243 * 7.00076 * 5 4 3 8 8 N 1.31617 * 119.99801 * 24.75216 * 7 5 4 9 9 Si 1.86802 * 119.99981 * 204.75077 * 7 5 4 10 10 H 1.48510 * 109.46835 * 90.00441 * 9 7 5 11 11 H 1.48498 * 109.47181 * 209.99971 * 9 7 5 12 12 H 1.48496 * 109.47523 * 330.00348 * 9 7 5 13 13 S 1.65595 * 120.00252 * 95.00017 * 4 3 2 14 14 O 1.42096 * 106.40534 * 150.33282 * 13 4 3 15 15 O 1.42107 * 106.40368 * 17.41258 * 13 4 3 16 16 C 1.76203 * 107.21646 * 263.87526 * 13 4 3 17 17 C 1.38228 * 120.41555 * 270.02033 * 16 13 4 18 18 N 1.31854 * 120.76194 * 179.97438 * 17 16 13 19 19 C 1.31883 * 121.72638 * 359.97438 * 18 17 16 20 20 C 1.38179 * 120.76505 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.42052 * 179.97438 * 20 19 18 22 22 C 1.38626 * 120.42344 * 90.00208 * 16 13 4 23 23 H 4.40637 * 5.51434 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47148 * 254.86560 * 3 2 1 25 25 H 1.09003 * 109.46868 * 134.86685 * 3 2 1 26 26 H 0.96997 * 120.00243 * 180.02562 * 8 7 5 27 27 H 1.08001 * 119.62096 * 359.97438 * 17 16 13 28 28 H 1.08003 * 119.61783 * 180.02562 * 19 18 17 29 29 H 1.08999 * 109.47060 * 89.99274 * 21 20 19 30 30 H 1.08994 * 109.46933 * 209.99509 * 21 20 19 31 31 H 1.09004 * 109.46897 * 329.99561 * 21 20 19 32 32 H 1.08003 * 120.78825 * 0.04034 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3341 -0.3544 5 6 3.2662 -2.2943 0.6129 6 1 3.7314 -3.2397 0.3758 7 6 2.8013 -2.0527 1.8984 8 7 1.8405 -1.1752 2.0966 9 14 3.5392 -2.9729 3.3469 10 1 4.6905 -2.2054 3.8863 11 1 2.5114 -3.1338 4.4066 12 1 4.0024 -4.3109 2.8993 13 16 3.5290 -1.6816 -1.9249 14 8 4.5518 -2.6666 -1.8734 15 8 3.6850 -0.4329 -2.5852 16 6 2.1261 -2.4586 -2.6549 17 6 1.9821 -3.8324 -2.6050 18 7 0.9348 -4.4209 -3.1485 19 6 -0.0106 -3.7310 -3.7563 20 6 0.0655 -2.3542 -3.8454 21 6 -1.0190 -1.5735 -4.5423 22 6 1.1527 -1.6999 -3.2861 23 1 -1.0498 -0.0004 -0.0003 24 1 3.0092 0.2691 0.9920 25 1 3.0090 0.7258 -0.7284 26 1 1.5159 -1.0060 2.9948 27 1 2.7361 -4.4308 -2.1151 28 1 -0.8541 -4.2481 -4.1895 29 1 -1.7898 -1.2998 -3.8218 30 1 -0.5930 -0.6704 -4.9793 31 1 -1.4586 -2.1857 -5.3297 32 1 1.2389 -0.6247 -3.3408 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189562250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:56 Heat of formation + Delta-G solvation = 32.442371 kcal Electronic energy + Delta-G solvation = -20070.478054 eV Core-core repulsion = 16932.615811 eV Total energy + Delta-G solvation = -3137.862242 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.64550 -36.43585 -35.96948 -34.54426 -33.26387 -32.09609 -31.54457 -31.23802 -27.04705 -26.67331 -23.97088 -23.41193 -22.01628 -18.62479 -18.04700 -17.10683 -16.79533 -16.56636 -16.14863 -15.71308 -14.73839 -14.38949 -13.99476 -13.52469 -13.44799 -13.28563 -12.68573 -12.63967 -12.46186 -12.42367 -11.93959 -11.85144 -11.36345 -11.07817 -10.86534 -10.84523 -10.56273 -10.41193 -10.27254 -9.82720 -9.55840 -9.26137 -9.04065 -8.87476 -8.63984 -8.40265 -6.68471 -4.06825 1.18393 1.59638 1.67611 3.04399 3.11011 3.15700 3.68294 3.93358 4.05499 4.11911 4.48985 4.60295 4.80518 4.96704 4.98670 5.21384 5.24098 5.46283 5.51673 5.66094 5.67136 5.87089 6.05274 6.16056 6.23526 6.46927 6.48505 6.64366 6.89870 7.05406 7.06076 7.16031 8.04489 8.26369 8.44978 8.84961 8.88242 10.20458 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.007606 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.282570 B = 3680.232612 C = 3845.545379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.108 4.108 3 C 0.234 3.766 4 N -0.791 5.791 5 C -0.240 4.240 6 H 0.124 0.876 7 C 0.029 3.971 8 N -0.812 5.812 9 Si 0.933 3.067 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.262 1.262 13 S 2.526 3.474 14 O -0.978 6.978 15 O -0.999 6.999 16 C -0.701 4.701 17 C 0.179 3.821 18 N -0.502 5.502 19 C 0.119 3.881 20 C -0.168 4.168 21 C -0.104 4.104 22 C 0.015 3.985 23 H 0.195 0.805 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.278 0.722 27 H 0.164 0.836 28 H 0.149 0.851 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 0.912 -3.665 5.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.111 4.111 3 C 0.109 3.891 4 N -0.612 5.612 5 C -0.389 4.389 6 H 0.141 0.859 7 C -0.185 4.185 8 N -0.450 5.450 9 Si 0.758 3.242 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.186 1.186 13 S 2.623 3.377 14 O -0.968 6.968 15 O -0.988 6.988 16 C -0.780 4.780 17 C 0.022 3.978 18 N -0.210 5.210 19 C -0.038 4.038 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.012 4.012 23 H 0.212 0.788 24 H 0.132 0.868 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.181 0.819 28 H 0.167 0.833 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.710 0.266 -4.252 5.649 hybrid contribution -1.066 0.099 0.645 1.250 sum -4.776 0.365 -3.608 5.997 Atomic orbital electron populations 1.24150 0.95252 1.02882 1.06468 1.23305 0.94489 0.97815 0.95463 1.18508 0.84049 0.84027 1.02518 1.55527 1.71687 1.14699 1.19319 1.20188 1.30368 1.00981 0.87326 0.85861 1.25667 0.94874 0.97797 1.00130 1.70220 1.20263 1.31062 1.23494 0.85790 0.78872 0.80098 0.79434 1.19536 1.20685 1.18613 1.12102 0.78489 0.73053 0.74006 1.93369 1.56298 1.60677 1.86429 1.93331 1.87403 1.42760 1.75326 1.33468 1.25663 1.06090 1.12743 1.22423 0.93417 0.90994 0.91015 1.67700 1.02584 1.40923 1.09811 1.22682 0.96258 0.90747 0.94080 1.20928 0.97958 0.95842 1.02344 1.20662 0.96430 0.99513 0.99551 1.21098 0.90410 0.99957 0.89739 0.78816 0.86785 0.89829 0.91097 0.81888 0.83335 0.91090 0.91426 0.91608 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.44 19.21 29.55 0.57 -4.87 16 2 C -0.11 -2.34 11.06 -37.12 -0.41 -2.76 16 3 C 0.23 5.04 5.45 -6.83 -0.04 5.01 16 4 N -0.79 -18.10 2.89 -62.77 -0.18 -18.28 16 5 C -0.24 -5.61 9.46 -15.06 -0.14 -5.75 16 6 H 0.12 2.84 7.36 -52.49 -0.39 2.45 16 7 C 0.03 0.65 4.94 -17.43 -0.09 0.56 16 8 N -0.81 -18.62 8.82 55.49 0.49 -18.13 16 9 Si 0.93 17.83 29.62 -169.99 -5.04 12.79 16 10 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 11 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 13 S 2.53 57.56 5.65 -107.50 -0.61 56.95 16 14 O -0.98 -24.06 16.26 -57.17 -0.93 -24.99 16 15 O -1.00 -23.70 15.81 -57.17 -0.90 -24.60 16 16 C -0.70 -14.91 5.99 -39.44 -0.24 -15.15 16 17 C 0.18 3.73 10.69 -17.55 -0.19 3.54 16 18 N -0.50 -9.82 10.36 -13.25 -0.14 -9.96 16 19 C 0.12 2.01 10.86 -17.55 -0.19 1.82 16 20 C -0.17 -2.79 5.90 -104.48 -0.62 -3.40 16 21 C -0.10 -1.26 10.04 36.01 0.36 -0.90 16 22 C 0.01 0.29 9.33 -39.28 -0.37 -0.08 16 23 H 0.19 3.28 7.80 -54.10 -0.42 2.86 16 24 H 0.11 2.45 6.55 -51.93 -0.34 2.11 16 25 H 0.08 1.68 6.87 -51.93 -0.36 1.32 16 26 H 0.28 6.04 8.31 -40.82 -0.34 5.70 16 27 H 0.16 3.25 7.63 -52.49 -0.40 2.85 16 28 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.14 2.54 7.71 -52.48 -0.40 2.13 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -28.81 298.28 -7.29 -36.09 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.13 Total: 7.60 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.34 Total: -21.98 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.17 Total: -46.36 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.83 Total: -49.59 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.04 Total: 12.79 kcal Atomic # 16 Polarization: 57.56 SS G_CDS: -0.61 Total: 56.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.81 -7.29 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189562250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.536 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds