Wall clock time and date at job start Tue Mar 31 2020 01:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47241 * 14.86944 * 3 2 1 5 5 C 1.36931 * 119.99689 * 274.99894 * 4 3 2 6 6 H 1.08001 * 119.99913 * 187.00328 * 5 4 3 7 7 C 1.38816 * 120.00243 * 7.00076 * 5 4 3 8 8 N 1.31617 * 119.99801 * 24.75216 * 7 5 4 9 9 Si 1.86802 * 119.99981 * 204.75077 * 7 5 4 10 10 H 1.48510 * 109.46835 * 90.00441 * 9 7 5 11 11 H 1.48498 * 109.47181 * 209.99971 * 9 7 5 12 12 H 1.48496 * 109.47523 * 330.00348 * 9 7 5 13 13 S 1.65595 * 120.00252 * 95.00017 * 4 3 2 14 14 O 1.42096 * 106.40534 * 150.33282 * 13 4 3 15 15 O 1.42107 * 106.40368 * 17.41258 * 13 4 3 16 16 C 1.76203 * 107.21646 * 263.87526 * 13 4 3 17 17 C 1.38228 * 120.41555 * 270.02033 * 16 13 4 18 18 N 1.31854 * 120.76194 * 179.97438 * 17 16 13 19 19 C 1.31883 * 121.72638 * 359.97438 * 18 17 16 20 20 C 1.38179 * 120.76505 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.42052 * 179.97438 * 20 19 18 22 22 C 1.38626 * 120.42344 * 90.00208 * 16 13 4 23 23 H 4.40637 * 5.51434 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47148 * 254.86560 * 3 2 1 25 25 H 1.09003 * 109.46868 * 134.86685 * 3 2 1 26 26 H 0.96997 * 120.00243 * 180.02562 * 8 7 5 27 27 H 1.08001 * 119.62096 * 359.97438 * 17 16 13 28 28 H 1.08003 * 119.61783 * 180.02562 * 19 18 17 29 29 H 1.08999 * 109.47060 * 89.99274 * 21 20 19 30 30 H 1.08994 * 109.46933 * 209.99509 * 21 20 19 31 31 H 1.09004 * 109.46897 * 329.99561 * 21 20 19 32 32 H 1.08003 * 120.78825 * 0.04034 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3341 -0.3544 5 6 3.2662 -2.2943 0.6129 6 1 3.7314 -3.2397 0.3758 7 6 2.8013 -2.0527 1.8984 8 7 1.8405 -1.1752 2.0966 9 14 3.5392 -2.9729 3.3469 10 1 4.6905 -2.2054 3.8863 11 1 2.5114 -3.1338 4.4066 12 1 4.0024 -4.3109 2.8993 13 16 3.5290 -1.6816 -1.9249 14 8 4.5518 -2.6666 -1.8734 15 8 3.6850 -0.4329 -2.5852 16 6 2.1261 -2.4586 -2.6549 17 6 1.9821 -3.8324 -2.6050 18 7 0.9348 -4.4209 -3.1485 19 6 -0.0106 -3.7310 -3.7563 20 6 0.0655 -2.3542 -3.8454 21 6 -1.0190 -1.5735 -4.5423 22 6 1.1527 -1.6999 -3.2861 23 1 -1.0498 -0.0004 -0.0003 24 1 3.0092 0.2691 0.9920 25 1 3.0090 0.7258 -0.7284 26 1 1.5159 -1.0060 2.9948 27 1 2.7361 -4.4308 -2.1151 28 1 -0.8541 -4.2481 -4.1895 29 1 -1.7898 -1.2998 -3.8218 30 1 -0.5930 -0.6704 -4.9793 31 1 -1.4586 -2.1857 -5.3297 32 1 1.2389 -0.6247 -3.3408 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189562250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:55 Heat of formation + Delta-G solvation = 13.993488 kcal Electronic energy + Delta-G solvation = -20071.278057 eV Core-core repulsion = 16932.615811 eV Total energy + Delta-G solvation = -3138.662246 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.08772 -38.14438 -37.84703 -36.44660 -34.57984 -33.78037 -33.03389 -32.91711 -28.39126 -28.21865 -25.70273 -24.89225 -23.43131 -20.36983 -19.72765 -18.77481 -18.44292 -18.20177 -17.64458 -17.30766 -16.43407 -16.09200 -15.31560 -15.21674 -15.06834 -14.63932 -14.24792 -14.16796 -13.68625 -13.63543 -13.58634 -13.13795 -13.04032 -12.76584 -12.69083 -12.62972 -12.31948 -12.05448 -11.88847 -11.47728 -11.12945 -10.89047 -10.60617 -10.46892 -10.12029 -9.99699 -8.37408 -5.85061 -0.36004 -0.07580 0.17734 1.50392 1.55898 1.64230 2.02611 2.33187 2.47582 2.56993 2.78515 2.89985 3.20102 3.43779 3.56786 3.82107 3.94502 3.98215 4.08974 4.19109 4.50348 4.57774 4.77444 4.80442 4.93003 4.96013 5.13029 5.17357 5.21409 5.39705 5.50600 5.66148 6.30605 6.71659 6.79901 7.13362 7.24158 8.51527 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.007606 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.282570 B = 3680.232612 C = 3845.545379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.142 4.142 3 C 0.234 3.766 4 N -0.801 5.801 5 C -0.272 4.272 6 H 0.116 0.884 7 C 0.003 3.997 8 N -0.830 5.830 9 Si 0.989 3.011 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.264 1.264 13 S 2.546 3.454 14 O -1.003 7.003 15 O -1.013 7.013 16 C -0.721 4.721 17 C 0.160 3.840 18 N -0.514 5.514 19 C 0.120 3.880 20 C -0.157 4.157 21 C -0.103 4.103 22 C -0.004 4.004 23 H 0.226 0.774 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.280 0.720 27 H 0.157 0.843 28 H 0.195 0.805 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 0.769 -4.336 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.145 4.145 3 C 0.110 3.890 4 N -0.623 5.623 5 C -0.419 4.419 6 H 0.133 0.867 7 C -0.209 4.209 8 N -0.467 5.467 9 Si 0.812 3.188 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.188 1.188 13 S 2.646 3.354 14 O -0.993 6.993 15 O -1.002 7.002 16 C -0.803 4.803 17 C 0.002 3.998 18 N -0.223 5.223 19 C -0.037 4.037 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.031 4.031 23 H 0.243 0.757 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.175 0.825 28 H 0.212 0.788 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.873 0.147 -4.893 7.646 hybrid contribution -0.521 0.145 0.681 0.869 sum -6.394 0.292 -4.213 7.663 Atomic orbital electron populations 1.24912 0.96108 1.01379 1.05021 1.23500 0.94988 0.99196 0.96818 1.18478 0.84632 0.83539 1.02392 1.55275 1.72766 1.15181 1.19039 1.20253 1.32232 1.01160 0.88256 0.86665 1.26281 0.94799 0.98403 1.01393 1.70289 1.20732 1.31807 1.23920 0.84971 0.78209 0.78940 0.76716 1.19079 1.20324 1.18802 1.10927 0.78202 0.72437 0.73871 1.93329 1.57691 1.61376 1.86903 1.93301 1.87790 1.43430 1.75728 1.33087 1.25807 1.06552 1.14832 1.22401 0.94345 0.90883 0.92122 1.67733 1.02822 1.41459 1.10282 1.23497 0.96353 0.91277 0.92565 1.21429 0.97751 0.96145 1.00599 1.20798 0.95152 0.99735 1.00303 1.21330 0.91205 1.00219 0.90314 0.75727 0.87314 0.89187 0.90891 0.82527 0.78847 0.89646 0.90698 0.88561 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -9.96 19.21 74.32 1.43 -8.53 16 2 C -0.14 -6.15 11.06 31.12 0.34 -5.81 16 3 C 0.23 10.30 5.45 84.57 0.46 10.77 16 4 N -0.80 -37.59 2.89 -352.51 -1.02 -38.61 16 5 C -0.27 -13.06 9.46 84.04 0.79 -12.27 16 6 H 0.12 5.56 7.36 -2.91 -0.02 5.54 16 7 C 0.00 0.12 4.94 84.86 0.42 0.54 16 8 N -0.83 -38.10 8.82 21.65 0.19 -37.91 16 9 Si 0.99 36.61 29.62 68.60 2.03 38.64 16 10 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 11 H -0.28 -10.06 7.11 99.48 0.71 -9.36 16 12 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 13 S 2.55 119.08 5.65 -56.49 -0.32 118.76 16 14 O -1.00 -51.12 16.26 -128.00 -2.08 -53.20 16 15 O -1.01 -48.92 15.81 -128.00 -2.02 -50.95 16 16 C -0.72 -30.86 5.99 22.36 0.13 -30.73 16 17 C 0.16 6.72 10.69 84.69 0.91 7.62 16 18 N -0.51 -19.44 10.36 -195.84 -2.03 -21.47 16 19 C 0.12 3.65 10.86 84.67 0.92 4.57 16 20 C -0.16 -4.72 5.90 -19.77 -0.12 -4.84 16 21 C -0.10 -2.02 10.04 71.24 0.72 -1.31 16 22 C 0.00 -0.15 9.33 22.47 0.21 0.06 16 23 H 0.23 6.93 7.80 -4.43 -0.03 6.90 16 24 H 0.11 4.81 6.55 -2.39 -0.02 4.80 16 25 H 0.09 3.71 6.87 -2.39 -0.02 3.70 16 26 H 0.28 12.12 8.31 -92.71 -0.77 11.35 16 27 H 0.16 6.54 7.63 -2.91 -0.02 6.52 16 28 H 0.19 4.04 8.06 -2.91 -0.02 4.01 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 31 H 0.10 1.35 8.09 -2.38 -0.02 1.33 16 32 H 0.14 5.07 7.71 -2.91 -0.02 5.04 16 Total: -1.00 -61.96 298.28 2.10 -59.86 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 1.14 Total: 24.77 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 6.21 Total: -39.91 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -2.86 Total: -97.98 kcal Atomic # 8 Polarization: -100.04 SS G_CDS: -4.11 Total: -104.15 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Atomic # 16 Polarization: 119.08 SS G_CDS: -0.32 Total: 118.76 kcal Total: -61.96 2.10 -59.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189562250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.857 kcal (2) G-P(sol) polarization free energy of solvation -61.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds